BAC Information

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BAC

Clone NameB6Ng01-121N09
Chromosome13 (Build37)3 (Build37)
Map Location 62,583,859 - 62,584,11290,454,288 - 90,455,021
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneEG624056, LOC665717, Ctsm, Cts3, EG665401, LOC624140, EG623505, LOC665415, LOC673332, BC052688, EG638502, LOC100041382, EG633250, EG624180, LOC100041420, LOC665444, EG630579, EG630594, LOC665455, LOC100041430, LOC100041962, LOC100041437, LOC100041979, LOC100041986, 8430426H19Rik
Downstream geneLOC100041455, 6720457D02Rik, EG665503, LOC100041493, LOC630857, EG630978, EG435366, LOC380850, LOC630951, Fbp2, Fbp1, LOC100042090, EG665524, 2010111I01Rik, Fancc
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-121N09.bB6Ng01-121N09.g
ACCDH925418DH925419
length1,007962
definitionDH925418|Mus musculus domesticus DNA, BAC clone: B6Ng01-121N09, 5' end.DH925419|Mus musculus domesticus DNA, BAC clone: B6Ng01-121N09, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(62,583,859 - 62,584,112)(90,454,288 - 90,455,021)
sequence
gaattccacaaatgagaaaaaagttataaagtttgtatttctgggtctgg
gttacctcactcagaacacttgtttccatcttcatccatttcccctgaat
ttcattttccttaactactggacattcttttgtgtaaatataacagatat
ttattacccattctccagttgatggatatctaaaccgttttcatttcctg
gctattgttaatagagcagaaatgaacgtagccaaccaagtgtctctgta
ggaggatatagaatcgtttggaagtatgccaaagagtagaatagcttgat
catgtagttgatctgtttagacaaacctcatcactaattcccacaatggc
tgcacctctttgtactcacatccacagtcagtaagtgtacccacccccac
agccacatcagcatgtgtcctcaggtgttcattgctatttttatgttgat
tttctgtttgaggaaggttgtttttttaattaggtattttcctcatttac
atttcaaatactatcccaaaagtcccccataccctccccccccactcccc
tacccacccactcccactttttggccctggtgttcccctgtactggggca
tataaagtttgcagtccaatgggcctctccagtgatggccaactaggcca
tcttttgatacatatgcagctagagtcaagagctctggggtactggtgaa
ttcataatgttgttccacctatagggttgcagatccctttagctccttgg
gtactttctttaactcctccattgggagccctgtgatccatccattagct
gactgtgagcatccacttctgtgtttgctaggcccaggcatagtctcaca
agagacagctatatcagggtcctttcagtaaaatcttgctagtgtatgca
atggtgtcagcattggaggctgattatgggatggatccctggatacggca
gtctctagatggtcatcctttgtctcagctccaactttgtctctgtactc
ttccatg
gaattcactaggtagactaggctggcccggaatctcacagagattcatct
tcctttggcctctggagtgctgagattacaggcatgtaccacccctccac
aatatgttttcatattattctgagtcatttatcattcctatgagaaccac
ctgtttggtagattttattgatgagatgatttaggttcttaatatttaat
tttgggttcttaattatcttagatataatctcaatgtctcttcactattt
ggttattcctttgctaggcagaggcctctagattccagacgatctcattt
ctgacttcttgctgttattttctgagctatgagagtccctttgagaatgt
tcttgcctagtgtttcttccatgtgttcctcctgcagcttcaaggtttca
agttttacattaatgtctttggctcattttataactgactgttagaaaag
ataagagatagggacctatctgaatatataaattgcttttggtaggatgg
ccattttcacaatcatcctactataaatccatgagggtgagaggtctttc
catcccctgatatctttttcaaattttctttggtgttttaaacttttcat
tgtacaggtctttcattttcctggctaatttttcttcaagatatttttga
ggccattagtatttagaattattatagaaatgtgtgagccaggcatggtg
gtgcacgcctttaatcccagcactcaaaaggcagaggcaggcgtatttct
gagttccaggccagcctggtctacagagtgagttccaggacagccagggc
tatacagagaaaccctatcttgaaaacaaacaaacaaacaaacaaacaaa
tgtgtgtattaaattctgtcgttttgtaatttatggtcttttctatccta
gcattgttatttgtgtttatctctctcatactgaagtattcttctgaagc
tctgtagaactg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr13_62583859_62584112
seq2: B6Ng01-121N09.b_520_767 (reverse)

seq1  AGGTGGAACAACATTATGAACTAACCAGTACCCCGGAGCTCTTGACTCTA  50
      |||||||||||||||||||| | ||||||||||| |||||||||||||||
seq2  AGGTGGAACAACATTATGAATTCACCAGTACCCCAGAGCTCTTGACTCTA  50

seq1  GCTGCATATGTATCAAAAGATGGCCTAGTCGGCCATCACTGGAAAGAGAG  100
      ||||||||||||||||||||||||||||| |||||||||||    |||||
seq2  GCTGCATATGTATCAAAAGATGGCCTAGTTGGCCATCACTG----GAGAG  96

seq1  GCCCATTGGACACGCAAACTTTATATGCCCCAGTACAGGGGAACGCCAGG  150
      |||||||||||  ||||||||||||||||||||||||||||||| |||||
seq2  GCCCATTGGAC-TGCAAACTTTATATGCCCCAGTACAGGGGAACACCAGG  145

seq1  GCCATAAAAGGCGAGTGGGTGGGTAGGGGAGTGGGGGTGGGTGGCTATGG  200
      |||| |||  | ||||||||||||||||||||||||| ||| || |||||
seq2  GCCAAAAAGTGGGAGTGGGTGGGTAGGGGAGTGGGGG-GGGAGGGTATGG  194

seq1  GGGACTTTTGGTATAGCATTGGAAATGTAAATGAGCTAAATACCTAATAA  250
      ||||||||||| |||| ||| ||||||||||||||  ||||||||||| |
seq2  GGGACTTTTGGGATAGTATTTGAAATGTAAATGAGGAAAATACCTAATTA  244

seq1  AAAA  254
      ||||
seq2  AAAA  248

seq1: chr3_90454288_90455021
seq2: B6Ng01-121N09.g_68_801

seq1  GAATTCACTAGGTAGACTAGGCTGGCCCGGAATCTCACAGAGATTCATCT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCACTAGGTAGACTAGGCTGGCCCGGAATCTCACAGAGATTCATCT  50

seq1  TCCTTTGGCCTCTGGAGTGCTGAGATTACAGGCATGTACCACCCCTCCAC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTTTGGCCTCTGGAGTGCTGAGATTACAGGCATGTACCACCCCTCCAC  100

seq1  AATATGTTTTCATATTATTCTGAGTCATTTATCATTCCTATGAGAACCAC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATATGTTTTCATATTATTCTGAGTCATTTATCATTCCTATGAGAACCAC  150

seq1  CTGTTTGGTAGATTTTATTGATGAGATGATTTAGGTTCTTAATATTTAAT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTTTGGTAGATTTTATTGATGAGATGATTTAGGTTCTTAATATTTAAT  200

seq1  TTTGGGTTCTTAATTATCTTAGATATAATCTCAATGTCTCTTCACTATTT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGGGTTCTTAATTATCTTAGATATAATCTCAATGTCTCTTCACTATTT  250

seq1  GGTTATTCCTTTGCTAGGCAGAGGCCTCTAGATTCCAGACGATCTCATTT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTTATTCCTTTGCTAGGCAGAGGCCTCTAGATTCCAGACGATCTCATTT  300

seq1  CTGACTTCTTGCTGTTATTTTCTGAGCTATGAGAGTCCCTTTGAGAATGT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGACTTCTTGCTGTTATTTTCTGAGCTATGAGAGTCCCTTTGAGAATGT  350

seq1  TCTTGCCTAGTGTTTCTTCCATGTGTTCCTCCTGCAGCTTCAAGGTTTCA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTGCCTAGTGTTTCTTCCATGTGTTCCTCCTGCAGCTTCAAGGTTTCA  400

seq1  AGTTTTACATTAATGTCTTTGGCTCATTTTATAACTGACTGTTAGAAAAG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTTTACATTAATGTCTTTGGCTCATTTTATAACTGACTGTTAGAAAAG  450

seq1  ATAAGAGATAGGGACCTATCTGAATATATAAATTGCTTTTGGTAGGATGG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAGAGATAGGGACCTATCTGAATATATAAATTGCTTTTGGTAGGATGG  500

seq1  CCATTTTCACAATCATCCTACTATAAATCCATGAGGGTGAGAGGTCTTTC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATTTTCACAATCATCCTACTATAAATCCATGAGGGTGAGAGGTCTTTC  550

seq1  CATCCCCTGATATCTTTTTCAAATTTTCTTTGGTGTTTTAAACTTTTCAT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCCCCTGATATCTTTTTCAAATTTTCTTTGGTGTTTTAAACTTTTCAT  600

seq1  TGTACAGGTCTTTCATTTTCCTGGCTAATTTTTCTTCAAGATATTTTTGA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTACAGGTCTTTCATTTTCCTGGCTAATTTTTCTTCAAGATATTTTTGA  650

seq1  GGCCATTAGTATTTAGAATTATTATAGAAATGTGTGAGCCAGGCATGGTG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCCATTAGTATTTAGAATTATTATAGAAATGTGTGAGCCAGGCATGGTG  700

seq1  GTGCACGCCTTTAATCCCAGCACTCAAAAGGCAG  734
      ||||||||||||||||||||||||||||||||||
seq2  GTGCACGCCTTTAATCCCAGCACTCAAAAGGCAG  734