BAC Information

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BAC

Clone NameB6Ng01-122F18
Chromosome16 (Build37)13 (Build37)
Map Location 94,947,047 - 94,947,49110,320,082 - 10,321,091
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneCldn14, Sim2, Hlcs, LOC622832, LOC100040857, Dscr6, LOC545178, Pigp, Ttc3, Dscr3, Dyrk1a
Downstream geneKcnj6, LOC666201, Kcnj15, Erg, Ets2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-122F18.bB6Ng01-122F18.g
ACCDH925806DH925807
length4831,016
definitionDH925806|Mus musculus domesticus DNA, BAC clone: B6Ng01-122F18, 5' end.DH925807|Mus musculus domesticus DNA, BAC clone: B6Ng01-122F18, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(94,947,047 - 94,947,491)(10,320,082 - 10,321,091)
sequence
actggctagccaacctagcctactcagtgacctactggtgatattgagag
accttgttcccaaagtataacaaatcagtgtgtacagtatctgaagaaca
acagcacccatggctgatctgtggcttccatacacatgcatattcacctg
tccccttctatatacccatacatacatacatacatacatacatacacaca
cacacacacacacatacacatgcacacacactatatacactatatataca
cacacatatatacacatacactataaatatacataaacactatatatata
tacatatagtgtatatgtatatagtgtatgtgtgtatatatatatatata
tatgtacacacacactatacatatacacactatgtgtatatatatagagt
gtatgtgtatatatagagtgtgtgtgtatatgtgtgtgtatatatagagt
gtatagtgtgtgtgcgtgtgtatgtgtgtgtgt
gaattcttgtgttgcaaaagaaaagaaatgctcaaatttggatgagttat
ctaagaataaaataaaaacaaatgaagatagcttagagactgtggaagca
aagattgtttcatgagcaatcaaatgcattctctgatgtcactagacctt
ctaaggagttgggtaatttggtattggatccatgtttgattaatgaatgt
cttgcagtagaatctctgctgtgtgtagcacaaatactttcaggttcagc
ttagtcagtgcaggtagatactgaggagacacactttatacactgggtgt
tcactaacaatcccactgacatgctctagatgaaagactcttataataca
ttttgagttgctgtcctgagcattggaacttctgtaccaccctccatagt
cagggcatgatgttagttctgatacctgtctgtcaatatttctaagaatc
ctaccaataatgctcacgtttcctttgtataatttacagtagtcttctat
atgaacatgttggaagaaattgaaggaaggtaaataatattggaatgcat
gctgttcctgaaaataatgtctcattgactctatggtcaatgtgtcatat
ctactgtgtattcttagtgggtagtacaggatcttggcaaccgggaacta
tgcaatgggtaatgatgtgagaaactgaaataatgtcaaagaagaacaaa
agaatattatatacatttaattatacactaggcattttagaatagtggag
aatgcaatccataaatatattactaaaatatatctggaaaggctataaat
tattaaatttccctttacatttttattattctaggatttagttatctacc
atggtcactacatattattagaatgtaagtctttggacctaagctggtag
taactccatattattattgcctgggtcttttgaacttggagagactatat
aatggtgaaagaacgagcttgtatttttagtatggagaagttcaggatgg
aacaatagaaagtcac
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr16_94947047_94947491
seq2: B6Ng01-122F18.b_293_498 (reverse)

seq1  TATATATACACACACACACATATATACATGCATGCATACATACATACATA  50
                                                        
seq2  --------------------------------------------------  0

seq1  TATACATACACACATGTACACTATATACATACACACATATATATATAGAC  100
                                                        
seq2  --------------------------------------------------  0

seq1  ACACACATCCTTCATATCCTGTATATATACATGTGTGTGTATATATATAC  150
                                               |||||||||
seq2  -----------------------------------------TATATATAC  9

seq1  ACACACACACGTACACATATATACATACATATATACACACACATATATAC  200
      ||||||| |  |||||| | |    |  ||||||||||| |||  | || 
seq2  ACACACATA--TACACACACA---CTCTATATATACACATACA-CTCTAT  53

seq1  ATATATATACATA-TATATATATGGCCATATATGTGTGTATGTATCCTTC  249
      ||||||| ||||| | | ||||||    |||| |||||| ||||     |
seq2  ATATATACACATAGTGTGTATATG----TATA-GTGTGTGTGTA-----C  93

seq1  ATATATATATACACACATGTACACATATATATACATACATATATATACAC  299
      ||||||||||                            ||||||||||||
seq2  ATATATATAT----------------------------ATATATATACAC  115

seq1  ACATGTACACACATATATACATACATATATATACATATATA-AATATATA  348
      ||||    ||||               |||||||||||| |  |||| ||
seq2  ACAT----ACAC---------------TATATACATATACACTATATGTA  146

seq1  CATATATATAAGGCCATATATGTGTGTGTATCCTTCGTATATGTATACAC  398
       |||||||||             |||| |||     |||||| ||||   
seq2  TATATATATA-------------GTGTTTAT-----GTATATTTATA---  175

seq1  ACACACACATCCTTCATATCCTGTATATATATGTGTGTGTATATATA  445
                      | |  ||| ||||||||||||||||||||||
seq2  ---------------GTGT-ATGTGTATATATGTGTGTGTATATATA  206

seq1: chr13_10320082_10321091
seq2: B6Ng01-122F18.g_68_1083 (reverse)

seq1  GTGACTTTCTATTGTTCCATCCTGAACTTCTCCATACTAAAAATAC-AGC  49
      |||||||||||||||||||||||||||||||||||||||||||||| |||
seq2  GTGACTTTCTATTGTTCCATCCTGAACTTCTCCATACTAAAAATACAAGC  50

seq1  TCTGTTCTTCTACATATATATAGTCTACTCCAAGTAC-AAAGACCCAGGC  98
      || ||||||  ||   |||||||||| |||||||| | ||||||||||||
seq2  TC-GTTCTTTCACCATTATATAGTCT-CTCCAAGTTCAAAAGACCCAGGC  98

seq1  AATAATAATATGGAGTAACTACCAGCTAAG--TCAAAGACTTACATACTA  146
      |||||||||||||||| |||||||||| ||   ||||||||||||| |||
seq2  AATAATAATATGGAGTTACTACCAGCTTAGGTCCAAAGACTTACATTCTA  148

seq1  ATAATATGTAGTGACCATGGTAGATAACTAAAT-CTAGAATAATAAAAAT  195
      ||||||||||||||||||||||||||||||||| ||||||||||||||||
seq2  ATAATATGTAGTGACCATGGTAGATAACTAAATCCTAGAATAATAAAAAT  198

seq1  GTAAA-GGAAATTTAATAATTTATAGCCTTTCCAGATATATTTTAGTAAT  244
      ||||| ||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAAAGGGAAATTTAATAATTTATAGCCTTTCCAGATATATTTTAGTAAT  248

seq1  ATATTTATGGATTGCATTCTCCACTATTCTAAAATGCCTAGTGTATAATT  294
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATTTATGGATTGCATTCTCCACTATTCTAAAATGCCTAGTGTATAATT  298

seq1  AAATGTATATAATATTCTTTTGTTCTTCTTTGACATTATTTCAGTTTCTC  344
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATGTATATAATATTCTTTTGTTCTTCTTTGACATTATTTCAGTTTCTC  348

seq1  ACATCATTA-CCATTGCATAGTT-CCGGTTGCCAAGATCCTGTACTACCC  392
      ||||||||| ||||||||||||| ||||||||||||||||||||||||||
seq2  ACATCATTACCCATTGCATAGTTCCCGGTTGCCAAGATCCTGTACTACCC  398

seq1  ACTAAGAATACACAGTAGATATGACACATTGACCATAGAGTCAATGAGAC  442
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTAAGAATACACAGTAGATATGACACATTGACCATAGAGTCAATGAGAC  448

seq1  ATTATTTTCAGGAACAGCATGCATTCCAATATTATTTACCTTCCTTCAAT  492
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTATTTTCAGGAACAGCATGCATTCCAATATTATTTACCTTCCTTCAAT  498

seq1  TTCTTCCAACATGTTCATATAGAAGACTACTGTAAATTATACAAAGGAAA  542
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTTCCAACATGTTCATATAGAAGACTACTGTAAATTATACAAAGGAAA  548

seq1  CGTGAGCATTATTGGTAGGATTCTTAGAAATATTGACAGACAGGTATCAG  592
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGTGAGCATTATTGGTAGGATTCTTAGAAATATTGACAGACAGGTATCAG  598

seq1  AACTAACATCATGCCCTGACTATGGAGGGTGGTACAGAAGTTCCAATGCT  642
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTAACATCATGCCCTGACTATGGAGGGTGGTACAGAAGTTCCAATGCT  648

seq1  CAGGACAGCAACTCAAAATGTATTATAAGAGTCTTTCATCTAGAGCATGT  692
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGACAGCAACTCAAAATGTATTATAAGAGTCTTTCATCTAGAGCATGT  698

seq1  CAGTGGGATTGTTAGTGAACACCCAGTGTATAAAGTGTGTCTCCTCAGTA  742
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTGGGATTGTTAGTGAACACCCAGTGTATAAAGTGTGTCTCCTCAGTA  748

seq1  TCTACCTGCACTGACTAAGCTGAACCTGAAAGTATTTGTGCTACACACAG  792
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTACCTGCACTGACTAAGCTGAACCTGAAAGTATTTGTGCTACACACAG  798

seq1  CAGAGATTCTACTGCAAGACATTCATTAATCAAACATGGATCCAATACCA  842
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAGATTCTACTGCAAGACATTCATTAATCAAACATGGATCCAATACCA  848

seq1  AATTACCCAACTCCTTAGAAGGTCTAGTGACATCAGAGAATGCATTTGAT  892
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTACCCAACTCCTTAGAAGGTCTAGTGACATCAGAGAATGCATTTGAT  898

seq1  TGCTCATGAAACAATCTTTGCTTCCACAGTCTCTAAGCTATCTTCATTTG  942
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTCATGAAACAATCTTTGCTTCCACAGTCTCTAAGCTATCTTCATTTG  948

seq1  TTTTTATTTTATTCTTAGATAACTCATCCAAATTTGAGCATTTCTTTTCT  992
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTATTTTATTCTTAGATAACTCATCCAAATTTGAGCATTTCTTTTCT  998

seq1  TTTGCAACACAAGAATTC  1010
      ||||||||||||||||||
seq2  TTTGCAACACAAGAATTC  1016