BAC Information

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BAC

Clone NameB6Ng01-122I17
Chromosome13 (Build37)
Map Location 48,701,474 - 48,850,161
singlet/doubletdoublet
Overlap geneAW456874, Barx1
Upstream gene4931429P17Rik, Id4, LOC667351, Zfp169, A830005F24Rik
Downstream genePhf2, EG667415, BC010304, C030044B11Rik, Wnk2, Ninj1, 1110007C09Rik, Susd3, Fgd3, Bicd2, Ippk, Cenpp, Tes3-ps, Ecm2, Aspn, Omd, Ogn, Nol8, Iars
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-122I17.bB6Ng01-122I17.g
ACCDH925941DH925942
length703795
definitionDH925941|Mus musculus domesticus DNA, BAC clone: B6Ng01-122I17, 5' end.DH925942|Mus musculus domesticus DNA, BAC clone: B6Ng01-122I17, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(48,701,474 - 48,702,176)(48,849,597 - 48,850,161)
sequence
gaattctgccaggccagacagtgaggcagaaagcacaggccataaacaac
acctgggcctgggcctctgaagtgaagaatagagcttttctttcagagcc
tttcaatgtacttttattaagtgtgaatttccacaaagcgacagaaagta
cactgaagaggttattaccatccatgtgtgcagcatgcccactgctattc
accaacgtggaatatggatcttcattctgtggcaagactcctgcggccat
cctcgtctgttggaaaatgtaaagaagttcattacttaactaatcacgtt
agatatctgccacccaatatggcagtcattaactatacggccctttcgtt
ttttttctcccttccctgtatggctgaactcagggtgtcacgaatgctaa
gtaagaattctactactgagctgcatccctagatacctaatccttcaaat
ataggcagtctaggttcaaatgtactgtttgaaaattcagtacaaagaaa
ggtaaactaaacttgggcaaagtggcacattcctttaatcccggcatggg
ggaggcagatctatctctttgagtttgtctgggttccaggacagccagag
ctatatagaaagaccctgtctcaaaaaaagaaaagaaagaaaagagaagg
gagagaagggagagaaggagagaaggagagaaggagagaaggagagggag
agg
gaattctttagtggaatgaatttcaagaaagcagaatgttgagtctgtgg
cacggttgctaccgattactcttatactggtttacaattttaaaaggcaa
taaagagggggggaggaaacataattttttaaaaatgcagttcggagaag
aaaagagcactaggcagtttagtgtggctgccaagacacgagccaaaaga
ggctgtaattgtggatgggccacatccaaacagtcgaagggcttacgggt
acaacagagtgacatttcccaagtaaaggaaaacatcctgcctgacacct
ttggctgggatgccaactcttctcctgtccttggactcaaccagaaacac
aagctccctcaaggttgcaagcctgccagtcttggtataagaactgggtt
tttggcctttggactcagcctggaaccaaaccatgggcttcactggctct
aagtatgttggcttacaataaagatctggggtctgtctggcttatataac
ttcatagccacacgagcctccccctcccatctctaccttttttcacaagg
aaagtgtggatcgctgtatacacgtgtatgtgcggttcaaatggatgttg
gcttggtttctctgaattactcttactaagacagattgtggggttgagaa
aatgtgttgggcttttgttgctgtgacgaagtgtctgccacacagctcag
ggaggatctctggttggttttgctcactggctcacaggtaaggcagagca
aattagttcatgtcatgaggatggtgggtgatgatgatggtggtg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr13_48701474_48702176
seq2: B6Ng01-122I17.b_46_748

seq1  GAATTCTGCCAGGCCAGACAGTGAGGCAGAAAGCACAGGCCATAAACAAC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTGCCAGGCCAGACAGTGAGGCAGAAAGCACAGGCCATAAACAAC  50

seq1  ACCTGGGCCTGGGCCTCTGAAGTGAAGAATAGAGCTTTTCTTTCAGAGCC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTGGGCCTGGGCCTCTGAAGTGAAGAATAGAGCTTTTCTTTCAGAGCC  100

seq1  TTTCAATGTACTTTTATTAAGTGTGAATTTCCACAAAGCGACAGAAAGTA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCAATGTACTTTTATTAAGTGTGAATTTCCACAAAGCGACAGAAAGTA  150

seq1  CACTGAAGAGGTTATTACCATCCATGTGTGCAGCATGCCCACTGCTATTC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTGAAGAGGTTATTACCATCCATGTGTGCAGCATGCCCACTGCTATTC  200

seq1  ACCAACGTGGAATATGGATCTTCATTCTGTGGCAAGACTCCTGCGGCCAT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCAACGTGGAATATGGATCTTCATTCTGTGGCAAGACTCCTGCGGCCAT  250

seq1  CCTCGTCTGTTGGAAAATGTAAAGAAGTTCATTACTTAACTAATCACGTT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCGTCTGTTGGAAAATGTAAAGAAGTTCATTACTTAACTAATCACGTT  300

seq1  AGATATCTGCCACCCAATATGGCAGTCATTAACTATACGGCCCTTTCGTT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATATCTGCCACCCAATATGGCAGTCATTAACTATACGGCCCTTTCGTT  350

seq1  TTTTTTCTCCCTTCCCTGTATGGCTGAACTCAGGGTGTCACGAATGCTAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTTCTCCCTTCCCTGTATGGCTGAACTCAGGGTGTCACGAATGCTAA  400

seq1  GTAAGAATTCTACTACTGAGCTGCATCCCTAGATACCTAATCCTTCAAAT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAAGAATTCTACTACTGAGCTGCATCCCTAGATACCTAATCCTTCAAAT  450

seq1  ATAGGCAGTCTAGGTTCAAATGTACTGTTTGAAAATTCAGTACAAAGAAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGGCAGTCTAGGTTCAAATGTACTGTTTGAAAATTCAGTACAAAGAAA  500

seq1  GGTAAACTAAACTTGGGCAAAGTGGCACATTCCTTTAATCCCGGCATGGG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTAAACTAAACTTGGGCAAAGTGGCACATTCCTTTAATCCCGGCATGGG  550

seq1  GGAGGCAGATCTATCTCTTTGAGTTTGTCTGGGTTCCAGGACAGCCAGAG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGGCAGATCTATCTCTTTGAGTTTGTCTGGGTTCCAGGACAGCCAGAG  600

seq1  CTATATAGAAAGACCCTGTCTCAAAAAAAGAAAAGAAAGAAAAGAGAAGG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATATAGAAAGACCCTGTCTCAAAAAAAGAAAAGAAAGAAAAGAGAAGG  650

seq1  GAGAGAAGGGAGAGAAGGAGAGAAGGAGAGAAGGAGAGAAGGAGAGGGAG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAGAAGGGAGAGAAGGAGAGAAGGAGAGAAGGAGAGAAGGAGAGGGAG  700

seq1  AGG  703
      |||
seq2  AGG  703

seq1: chr13_48849597_48850161
seq2: B6Ng01-122I17.g_297_860 (reverse)

seq1  CACCACCATCATCATCA-CCACCATCCTCATGACATGAACTAATTTGCTC  49
      ||||||||||||||||| ||||||||||||||||||||||||||||||||
seq2  CACCACCATCATCATCACCCACCATCCTCATGACATGAACTAATTTGCTC  50

seq1  TGCCTTACCTGTGAGCCAGTGAGCAAAACCAACCAGAGAATCCTCCCCTG  99
      |||||||||||||||||||||||||||||||||||||| ||||| |||||
seq2  TGCCTTACCTGTGAGCCAGTGAGCAAAACCAACCAGAG-ATCCT-CCCTG  98

seq1  AGCTGTGTGGCAGACACTTCGTCACAGCAACAAAAGCCCAACACATTTTC  149
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTGTGTGGCAGACACTTCGTCACAGCAACAAAAGCCCAACACATTTTC  148

seq1  TCAACCCCACAATCTGTCTTAGTAAGAGTAATTCAGAGAAACCAAGCCAA  199
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAACCCCACAATCTGTCTTAGTAAGAGTAATTCAGAGAAACCAAGCCAA  198

seq1  CATCCATTTGAACCGCACATACACGTGTATACAGCGATCCACACTTTCCT  249
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCCATTTGAACCGCACATACACGTGTATACAGCGATCCACACTTTCCT  248

seq1  TGTGAAAAAAGGTAGAGATGGGAGGGGGAGGCTCGTGTGGCTATGAAGTT  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGAAAAAAGGTAGAGATGGGAGGGGGAGGCTCGTGTGGCTATGAAGTT  298

seq1  ATATAAGCCAGACAGACCCCAGATCTTTATTGTAAGCCAACATACTTAGA  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATAAGCCAGACAGACCCCAGATCTTTATTGTAAGCCAACATACTTAGA  348

seq1  GCCAGTGAAGCCCATGGTTTGGTTCCAGGCTGAGTCCAAAGGCCAAAAAC  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCAGTGAAGCCCATGGTTTGGTTCCAGGCTGAGTCCAAAGGCCAAAAAC  398

seq1  CCAGTTCTTATACCAAGACTGGCAGGCTTGCAACCTTGAGGGAGCTTGTG  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGTTCTTATACCAAGACTGGCAGGCTTGCAACCTTGAGGGAGCTTGTG  448

seq1  TTTCTGGTTGAGTCCAAGGACAGGAGAAGAGTTGGCATCCCAGCCAAAGG  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCTGGTTGAGTCCAAGGACAGGAGAAGAGTTGGCATCCCAGCCAAAGG  498

seq1  TGTCAGGCAGGATGTTTTCCTTTACTTGGGAAATGTCACTCTGTTGTACC  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCAGGCAGGATGTTTTCCTTTACTTGGGAAATGTCACTCTGTTGTACC  548

seq1  CGTAAGCCCTTCGACT  565
      ||||||||||||||||
seq2  CGTAAGCCCTTCGACT  564