BAC Information

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BAC

Clone NameB6Ng01-122L20
Chromosome13 (Build37)
Map Location 55,186,944 - 55,362,984
singlet/doubletdoublet
Overlap geneUimc1, LOC622707, Zfp346, Fgfr4, Nsd1
Upstream geneSfxn1, Hrh2, LOC100040535, Cplx2, Thoc3, LOC100040543, 4732471D19Rik, 4833439L19Rik, Arl10, D13Wsu177e, Higd2a, Cltb, Ubxd8, Rn4.5s-ps3, Rnf44, BC040758, Gprin1, Sncb, Eif4e1b, Tspan17, Unc5a, Hk3
Downstream geneRab24, Prelid1, Mxd3, Lman2, Rgs14, Slc34a1, Pfn3, F12, Gprk6, Prr7, Dbn1, Pdlim7, Dok3, Ddx41, BC021381, Tmed9, B4galt7, Caml, Ddx46, B230219D22Rik, 2310047H23Rik, Pcbd2, Catsper3, Pitx1, H2afy, BC027057, Neurog1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-122L20.bB6Ng01-122L20.g
ACCDH926086DH926087
length1,1871,206
definitionDH926086|Mus musculus domesticus DNA, BAC clone: B6Ng01-122L20, 5' end.DH926087|Mus musculus domesticus DNA, BAC clone: B6Ng01-122L20, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(55,361,808 - 55,362,984)(55,186,944 - 55,188,121)
sequence
gaattctcatccacctgcttgttctgagcactaggttgacatcgggcaag
aaggctttcgtcttcacagcgcgaacttacctaaaaacagttaagttcaa
ggagaacttagaaaataataacaataaaaacaacaacaacaacaacttaa
aagtacaagagactctgatacttgctatgacatggccatgaagcttgagg
acagactttatgcccagctccataagtatgaatcatctacaagaatcagg
ttttcagtgtaggaagatgaagattcatagatgaatgatgcctatggctg
tatagcagcacacatatgcttaatgttgtagaagtgcacacttaaaatac
acgtggttgtaagcctccatgtggttattgggaattgaactcaggaccta
tagaagagcagtcagtattcttaactgctgagccaactctccaacccact
aataaaattattaacagacaggttcttcaatgcttttttaaaaaaccaca
gagtaataacatctgatagggtacaggacatttctttgctactaaagtaa
ttacacacatactgcttattcacaaaagttcaaaataaaactaatgagaa
gatcagtcaccactatgacaacttcactaaaaaagttagggtaaaacttg
taagcattttttattttattatccaagattcttaatattacaacataata
atattatttttttaatgtttttttaaagatttatttattatttattatat
gtaagtacactgtagctgtcttcagacactccagaagggggagtcagatc
tcattacggatggttgtgagccaccatgtggttgctgggatttgaactcc
gaaccttcggaagagcagtcgggtgctcttacccactgagccatctcacc
agcccccatatgataattcttaagtacttaaatacgcttcgaaacagagg
gaaacataaaggagaacatgatatctagatttatttatttactttctgat
taactacccagggcaggaactgtgcataaggaatgataaagaccaaacca
aaaacacctggagaaggcaaaatccctctgaagtaatgtcttcttagaga
atacaagttaatttctgctaggtgaaaaatgtgaagggcccttacacagt
ggtggtgacgcccccttattcacctgttcctggtacc
gaattcaattaaaaaatgaaaacttacgtgcaacttttcttttagccaaa
cactttgatctgttcgactgttttgtcttcgttttctgcaatccattctc
ctcttttgtttcctgttataaataaaaaaataagatcagagtaggtgaca
ttaaaagtaataatttttggggagccgcgggttaccgtgcagacatggcc
aagtccaagaaccacaccacacacaaccagtcccgcaaatggcacagaaa
tggcatcaagaaaccccggtcgcaaagatacgaatctcttaagggggttg
accccaagttcctgaggaacatgcgctttgccaagaagcacaacaagaaa
ggcctgaagaagatgcaggccaacaatgcaaaggcagtgagtgcgcgcgc
agaggccatcaaggccctggtgaagcctcaggccatcaagcccaagatgc
caaaaggccccaaactcaagcggctggctttcatcgctcaccctaagctt
gggaagcggattcgaagctacatggccaagggtcagaggctctgccaacc
gaagcctaaggtccaaaccaaggcaggggccaaagctccagctaaggccc
aggcttcagctccagcccaggctcccaaaggtgctcaggcccccaaaagt
gcccaggcccctgtgaaggccccatagaaatggctcctgccagtgtgaag
acagacggactgctgtgacacacctccccacacactattttgcagatgac
cagtgtcctatgctgttcttacaaataaactcaggcaagatcaaaaaaaa
aaaaaaaaagtaataatttttctatttcttctatatttccttttggtagg
agaaacctgtgaattaccagtgattaacctaataatggtatgcattaaga
acataaagaaaagtcccttttctccattaaaaaaaaggcatgccttctag
aacccatttagaacccataaggaatagaattgtataaatatactgacatg
attaacttattatggttcacaagaaaccacataaaaactgggccaatatt
ccaaaacaactatgtagacattccaccccaaagtattcagagggcattgg
atcaagtaggtgtttgggattccaatatattcacatttaatgaatcaatt
cctttgccacggggctggtgatgaaagaacgtaaggaatttctataaact
aatttt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr13_55361808_55362984
seq2: B6Ng01-122L20.b_52_1238 (reverse)

seq1  GGTA-CAGGAACAAGTGCATAA-GGTGCGTCACCA-CATTGT---AGGTG  44
      |||| |||||||| ||| |||| || ||||||||| || |||   |||  
seq2  GGTACCAGGAACAGGTGAATAAGGGGGCGTCACCACCACTGTGTAAGGGC  50

seq1  CCTTCA-ATTCTTCACCT-GCAGAATTTA--CTGTATCTTC--AGAAGAC  88
      |||||| ||| ||||||| |||||| |||   |||||  ||  |||||||
seq2  CCTTCACATTTTTCACCTAGCAGAAATTAACTTGTATTCTCTAAGAAGAC  100

seq1  AATTACTTCAGTGGGATTTTGCCTTCT-CAGGTGTTTTTGTTTTGTCTTT  137
       |||||||||| ||||||||||||||| |||||||||||| ||||   ||
seq2  -ATTACTTCAGAGGGATTTTGCCTTCTCCAGGTGTTTTTGGTTTGGTCTT  149

seq1  TCTCATTCCTTCTTGCACAGTTCCTGCCCTGTGTTAGTTATTCAGAAAGT  187
      | |||||||||  |||||||||||||||||| | |||||| |||||||||
seq2  TATCATTCCTT-ATGCACAGTTCCTGCCCTG-GGTAGTTAATCAGAAAGT  197

seq1  -AATAAATAAATCTAGATATCATGTTTCTCTTTATGTTTCCCTCTGTTTT  236
       |||||||||||||||||||||||||   ||||||||||||||||| |||
seq2  AAATAAATAAATCTAGATATCATGTTCTCCTTTATGTTTCCCTCTG-TTT  246

seq1  CGAAGCGTATTTAAGTACTTAAGAA-TATCATTATGGGGGCTGGTGAGAT  285
      ||||||||||||||||||||||||| ||||| ||||||||||||||||||
seq2  CGAAGCGTATTTAAGTACTTAAGAATTATCA-TATGGGGGCTGGTGAGAT  295

seq1  GGCTCAGTGGGTAAGAGCACCCGACTGCTCTTCCGAAGGTTCGGAGTTCA  335
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTCAGTGGGTAAGAGCACCCGACTGCTCTTCCGAAGGTTCGGAGTTCA  345

seq1  AATCCCAGCAACCACATGGTGGCTCACAACCATCCGTAATGAGATCTGAC  385
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCCCAGCAACCACATGGTGGCTCACAACCATCCGTAATGAGATCTGAC  395

seq1  TCCCCCTTCTGGAGTGTCTGAAGACAGCTACAGTGTACTTACATATAATA  435
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCCCTTCTGGAGTGTCTGAAGACAGCTACAGTGTACTTACATATAATA  445

seq1  AATAATAAATAAATCTTTAAAAAAACATTAAAAAAATAATATTATTATGT  485
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAATAAATAAATCTTTAAAAAAACATTAAAAAAATAATATTATTATGT  495

seq1  TGTAATATTAAGAATCTTGGATAATAAAATAAAAAATGCTTACAAGTTTT  535
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTAATATTAAGAATCTTGGATAATAAAATAAAAAATGCTTACAAGTTTT  545

seq1  ACCCTAACTTTTTTAGTGAAGTTGTCATAGTGGTGACTGATCTTCTCATT  585
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCCTAACTTTTTTAGTGAAGTTGTCATAGTGGTGACTGATCTTCTCATT  595

seq1  AGTTTTATTTTGAACTTTTGTGAATAAGCAGTATGTGTGTAATTACTTTA  635
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTTTATTTTGAACTTTTGTGAATAAGCAGTATGTGTGTAATTACTTTA  645

seq1  GTAGCAAAGAAATGTCCTGTACCCTATCAGATGTTATTACTCTGTGGTTT  685
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAGCAAAGAAATGTCCTGTACCCTATCAGATGTTATTACTCTGTGGTTT  695

seq1  TTTAAAAAAGCATTGAAGAACCTGTCTGTTAATAATTTTATTAGTGGGTT  735
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAAAAAAGCATTGAAGAACCTGTCTGTTAATAATTTTATTAGTGGGTT  745

seq1  GGAGAGTTGGCTCAGCAGTTAAGAATACTGACTGCTCTTCTATAGGTCCT  785
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGAGTTGGCTCAGCAGTTAAGAATACTGACTGCTCTTCTATAGGTCCT  795

seq1  GAGTTCAATTCCCAATAACCACATGGAGGCTTACAACCACGTGTATTTTA  835
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTTCAATTCCCAATAACCACATGGAGGCTTACAACCACGTGTATTTTA  845

seq1  AGTGTGCACTTCTACAACATTAAGCATATGTGTGCTGCTATACAGCCATA  885
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGTGCACTTCTACAACATTAAGCATATGTGTGCTGCTATACAGCCATA  895

seq1  GGCATCATTCATCTATGAATCTTCATCTTCCTACACTGAAAACCTGATTC  935
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCATCATTCATCTATGAATCTTCATCTTCCTACACTGAAAACCTGATTC  945

seq1  TTGTAGATGATTCATACTTATGGAGCTGGGCATAAAGTCTGTCCTCAAGC  985
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTAGATGATTCATACTTATGGAGCTGGGCATAAAGTCTGTCCTCAAGC  995

seq1  TTCATGGCCATGTCATAGCAAGTATCAGAGTCTCTTGTACTTTTAAGTTG  1035
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCATGGCCATGTCATAGCAAGTATCAGAGTCTCTTGTACTTTTAAGTTG  1045

seq1  TTGTTGTTGTTGTTTTTATTGTTATTATTTTCTAAGTTCTCCTTGAACTT  1085
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTTGTTGTTGTTTTTATTGTTATTATTTTCTAAGTTCTCCTTGAACTT  1095

seq1  AACTGTTTTTAGGTAAGTTCGCGCTGTGAAGACGAAAGCCTTCTTGCCCG  1135
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTGTTTTTAGGTAAGTTCGCGCTGTGAAGACGAAAGCCTTCTTGCCCG  1145

seq1  ATGTCAACCTAGTGCTCAGAACAAGCAGGTGGATGAGAATTC  1177
      ||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTCAACCTAGTGCTCAGAACAAGCAGGTGGATGAGAATTC  1187

seq1: chr13_55186944_55188121
seq2: B6Ng01-122L20.g_67_1272

seq1  GAATTCAATTAAAAAATGAAAACTTACGTGCAACTTTTCTTTTAGCCAAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAATTAAAAAATGAAAACTTACGTGCAACTTTTCTTTTAGCCAAA  50

seq1  CACTTTGATCTGTTCGACTGTTTTGTCTTCGTTTTCTGCAATCCATTCTC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTTTGATCTGTTCGACTGTTTTGTCTTCGTTTTCTGCAATCCATTCTC  100

seq1  CTCTTTTGTTTCCTGTTATAAATAAAAAAATAAGATCAGAGTAGGTGACA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTTTTGTTTCCTGTTATAAATAAAAAAATAAGATCAGAGTAGGTGACA  150

seq1  TTAAAAGTAATAATTTTTGGGGAGCCGCGGGTTACCGTGCAGACATGGCC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAAAGTAATAATTTTTGGGGAGCCGCGGGTTACCGTGCAGACATGGCC  200

seq1  AAGTCCAAGAACCACACCACACACAACCAGTCCCGCAAATGGCACAGAAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTCCAAGAACCACACCACACACAACCAGTCCCGCAAATGGCACAGAAA  250

seq1  TGGCATCAAGAAACCCCGGTCGCAAAGATACGAATCTCTTAAGGGGGTTG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCATCAAGAAACCCCGGTCGCAAAGATACGAATCTCTTAAGGGGGTTG  300

seq1  ACCCCAAGTTCCTGAGGAACATGCGCTTTGCCAAGAAGCACAACAAGAAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCCCAAGTTCCTGAGGAACATGCGCTTTGCCAAGAAGCACAACAAGAAA  350

seq1  GGCCTGAAGAAGATGCAGGCCAACAATGCAAAGGCAGTGAGTGCGCGCGC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCCTGAAGAAGATGCAGGCCAACAATGCAAAGGCAGTGAGTGCGCGCGC  400

seq1  AGAGGCCATCAAGGCCCTGGTGAAGCCTCAGGCCATCAAGCCCAAGATGC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGGCCATCAAGGCCCTGGTGAAGCCTCAGGCCATCAAGCCCAAGATGC  450

seq1  CAAAAGGCCCCAAACTCAAGCGGCTGGCTTTCATCGCTCACCCTAAGCTT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAAGGCCCCAAACTCAAGCGGCTGGCTTTCATCGCTCACCCTAAGCTT  500

seq1  GGGAAGCGGATTCGAAGCTACATGGCCAAGGGTCAGAGGCTCTGCCAACC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGAAGCGGATTCGAAGCTACATGGCCAAGGGTCAGAGGCTCTGCCAACC  550

seq1  GAAGCCTAAGGTCCAAACCAAGGCAGGGGCCAAAGCTCCAGCTAAGGCCC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGCCTAAGGTCCAAACCAAGGCAGGGGCCAAAGCTCCAGCTAAGGCCC  600

seq1  AGGCTTCAGCTCCAGCCCAGGCTCCCAAAGGTGCTCAGGCCCCCAAAAGT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCTTCAGCTCCAGCCCAGGCTCCCAAAGGTGCTCAGGCCCCCAAAAGT  650

seq1  GCCCAGGCCCCTGTGAAGGCCCCATAGAAATGGCTCCTGCCAGTGTGAAG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCCAGGCCCCTGTGAAGGCCCCATAGAAATGGCTCCTGCCAGTGTGAAG  700

seq1  ACAGACGGACTGCTGTGACACACCTCCCCACACACTA-TTTGCAGATGAC  749
      ||||||||||||||||||||||||||||||||||||| ||||||||||||
seq2  ACAGACGGACTGCTGTGACACACCTCCCCACACACTATTTTGCAGATGAC  750

seq1  CAGTGTCCTATGCTGTTCTTACAAATAAACTCAGGCAAGATCAAAAAAAA  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTGTCCTATGCTGTTCTTACAAATAAACTCAGGCAAGATCAAAAAAAA  800

seq1  AAAAAAAAAGTAATAATTTTTCTATTTCTTCTATATTTCCTTTTGGTTAG  849
      |||||||||||||||||||||||||||||||||||||||||||||| |||
seq2  AAAAAAAAAGTAATAATTTTTCTATTTCTTCTATATTTCCTTTTGG-TAG  849

seq1  TAGAAACCTGTGAATTACCAGTGAT--AACTAATAATGGTATGCA-TAAG  896
       ||||||||||||||||||||||||  | |||||||||||||||| ||||
seq2  GAGAAACCTGTGAATTACCAGTGATTAACCTAATAATGGTATGCATTAAG  899

seq1  -ACATAA--GAAAGT-CCTTTTCTCAATT-AAAAAAAGGCATG-CATCTA  940
       ||||||   ||||| ||||||||| ||| ||||||||||||| | ||||
seq2  AACATAAAGAAAAGTCCCTTTTCTCCATTAAAAAAAAGGCATGCCTTCTA  949

seq1  GAA-CCAATTAGA--CCATAA-GAATAGAAATGTAT-AATATACTGACAT  985
      ||| ||| |||||  |||||| |||||||| ||||| |||||||||||||
seq2  GAACCCATTTAGAACCCATAAGGAATAGAATTGTATAAATATACTGACAT  999

seq1  GATTAAC-TATTAT-GTTCAC-AGAAA-CACATAAAAACT-GGCCAATAT  1030
      ||||||| |||||| |||||| ||||| |||||||||||| |||||||||
seq2  GATTAACTTATTATGGTTCACAAGAAACCACATAAAAACTGGGCCAATAT  1049

seq1  T-CAAAAC-ACTA-GTAGACA-TCCACCCAAGA----TCAGA-GGCATTT  1071
      | |||||| |||| ||||||| ||||||| | |    ||||| |||||| 
seq2  TCCAAAACAACTATGTAGACATTCCACCCCAAAGTATTCAGAGGGCATTG  1099

seq1  GATTCAGTAAGTGTTT--GATTCCAATATATT--CATTTATTGTAAATC-  1116
      |||  |||| ||||||  ||||||||||||||  |||||| ||  |||| 
seq2  GATCAAGTAGGTGTTTGGGATTCCAATATATTCACATTTAATG--AATCA  1147

seq1  ATTCTTTGGCCACTGGTTGGTTGATGAAAGAAAAAGTAAAAGAATTCTAT  1166
      |||| || ||||| ||   | |||||||||  || ||||   | ||||||
seq2  ATTCCTTTGCCACGGGGCTGGTGATGAAAG--AACGTAAGGAATTTCTAT  1195

seq1  AAAATCAATTTT  1178
      ||| | ||||||
seq2  AAACT-AATTTT  1206