BAC Information

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BAC

Clone NameB6Ng01-123N09
Chromosome13 (Build37)
Map Location 65,856,511 - 65,977,274
singlet/doubletdoublet
Overlap geneLOC665851, Vmn2r-ps99
Upstream geneCntnap3, EG432767, 4930458L03Rik, LOC218301, LOC628515, 4932441B19Rik, Gm274, Hiatl1, LOC100042311, Olfr465-ps1, Olfr466, Nlrp4f, ENSMUSG00000074847, Zfp369, LOC100042347, LOC100042341, LOC665738, EG665742, LOC665750, LOC665753, EG544944, EG665767, LOC665777, EG628648, LOC665809, LOC100042404, LOC628722
Downstream geneLOC628794, EG665897, LOC100041855, EG628746, LOC100042434, LOC100041892, EG665974, LOC100041915, 2410141K09Rik, C330014B19Rik, Mzf6d, Vmn2r-ps106, LOC666027, LOC100042492, LOC100041947, EG382769, LOC666052, EG432768, LOC666061
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-123N09.bB6Ng01-123N09.g
ACCDH926896DH926897
length1,1121,113
definitionDH926896|Mus musculus domesticus DNA, BAC clone: B6Ng01-123N09, 5' end.DH926897|Mus musculus domesticus DNA, BAC clone: B6Ng01-123N09, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(65,856,511 - 65,857,137)(65,976,161 - 65,977,274)
sequence
gaattctaagagatggataatttactccataggttccacttatcaaaatt
aagtcaaactaacataagcaacttaaacagacctaaacacctagaaaaag
agaagtcattaaaaatctgccaccaaaaagacctcaggaccatgagtttt
ggggtagaatcctagcagactttcaaggaggaggtaacaaggctactcct
caaagtattcaacaatattgaaagagaagcaacattggccaatttatttg
gtgaacccatggttactcaaatatccagtcaataaagactcaggaacaaa
agagaattgcagatcaactttccttaaagtgactgacacaaaaacacttt
ataaagcaaaataaataaaaaagaaagaaaatagaaaaaatatcaaaaga
tcatccaccatgatcaatgaggtatgattcattaaatagatgcaggaatg
tttcaacataatgtgcgtaaagtgtaaaaaaaaaaagaagtaattatctc
actagatggtgaataattctctgacaatatccaacatcacttcatgataa
aattcttggagtgattaaggatacaagggatatacctaaacataataatg
ttgccttacagcaagcttagagcaaacattaaaataaatggagagacatt
caaattaattccactaatccccccaaaagataaggtggtccattctctcc
atatctattcaaaatattatctaaaagtttagctagagcaataaaactga
agaagacgaaagtaatataaattataaaggaggaagtaaatttatcttta
tttacagatgaagtgatagtatgcatgagtgaaccaaacttcccaaaggc
aattcctagagctgataacactttcagcaaacttgtagggtacaggatta
actaaaaagaaagaaaagcagtagccatcgattgtgaaatgagtttacag
tgcaacaaataaacatatatcatatgtatgaatgattgtgatacttgtca
catttttcccataataatcttgaggactccaatataggggtgtaggctaa
atctttaccaggtcttttgtagtcaagatacttggtattataaaggtcat
ctaagactactg
gaattcaaaggaggtgaatagataactttctacatatgatatcctcaaag
actcaatagatagaatccagcctctcgcgttgtccatcattatgaactgg
agctcaatatgctaaagctaaactaacctatgacacacttgaaagtatta
aaatagagattaatgttatacttaatgttcagtggttcctaaagttacag
gggaaaaacaggacagaaccccactgtttgtgtacacagctaaaaatttc
taattcatggcattgaagcaggaagtaaagttaatgacttacctaagact
aaaactgcaatcatataaaatgtcagtaaaattgtcctccactgtaaata
ggtaaaaaccacagtcacttctcaaatctccatgattgtcctcactattc
atcatccttcaaaagcaaatgggttcagtcaaacagcacaagatgagaga
aaccttcaggagaaaaaaggaaatagtgaaagcacacagcttcttcatgt
cccctaggttctatgatggagcacatgtgaaatccttttattctgcacag
agaaatcacacacaatttatacctatgtgtctgttttaaggcttgctgtt
tgcagatccacttaattatattctgcagctccttcccactcatcctgtgt
taggtccctggatacatctggaaaattttgtccttaagcgctctttctga
ggtctgaaaattttgatcaagacatttctgaaaacatgctgtgaagatca
ttttctccatcttcaggtgccatgatttcatgcatatccactgcatatac
tccagggacaatcttctgagaagcttgggccagactacgtgtcaacagcc
attttttatgaacacaattggcaatcatgataatcgatttcatcagaact
tccatagtaatacaaaagttgagaaggtcataaatgtcccgtgtcatttg
gactttgagttgaatcataggaaattatgtctccattttctttttttaat
gtatttacatagaaggcaatcaggatgtcaacaaaaacagcggcaatttt
ttattttgcaatacagagtgggtatcacattaacagaaacaacataatct
ttctataagctgc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr13_65856511_65857137
seq2: B6Ng01-123N09.b_553_1160

seq1  GATGGTGAATAATTCTCTGACAATATCCAACATCACTTCATGATAAAATT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGGTGAATAATTCTCTGACAATATCCAACATCACTTCATGATAAAATT  50

seq1  CTTGGAGTGATTAAGGATACAAGGGATATACCTAAACATAATAATGTTGC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGGAGTGATTAAGGATACAAGGGATATACCTAAACATAATAATGTTGC  100

seq1  CTTACAGCAAGCTTAGAGCAAACATTAAAATAAATGGAGAGACATTCAAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTACAGCAAGCTTAGAGCAAACATTAAAATAAATGGAGAGACATTCAAA  150

seq1  TTAATTCCACTAATCCCCCCAAAAGATAAGGTGGTCCATTCTCTCCATAT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAATTCCACTAATCCCCCCAAAAGATAAGGTGGTCCATTCTCTCCATAT  200

seq1  CTATTCAAAATATTATCTAAAAGTTTAGCTAGAGCAATAAAACTGAAGAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATTCAAAATATTATCTAAAAGTTTAGCTAGAGCAATAAAACTGAAGAA  250

seq1  GACGAAAGTAATATAAATTATAAAGGAGGAAGTAAATTTATCTTTATTTA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACGAAAGTAATATAAATTATAAAGGAGGAAGTAAATTTATCTTTATTTA  300

seq1  CAGATGAAGTGATAGTATGCATGAGTGAACCAAAACTTCCCAAAGGCAAT  350
      ||||||||||||||||||||||||||||||| ||||||||||||||||||
seq2  CAGATGAAGTGATAGTATGCATGAGTGAACC-AAACTTCCCAAAGGCAAT  349

seq1  TCCTAGAGCTGATAAACACTTTCAGCAAACTTGTAGGGTACAGGATTAAC  400
      ||||||||||||| ||||||||||||||||||||||||||||||||||||
seq2  TCCTAGAGCTGAT-AACACTTTCAGCAAACTTGTAGGGTACAGGATTAAC  398

seq1  TAAAAAAGAAAAGAAAAAGCAGTAGCCATCGATTGTGAAAATGAGTTTAC  450
      | |||||||||   ||||||||||||||||||||||| ||||||||||||
seq2  T-AAAAAGAAA--GAAAAGCAGTAGCCATCGATTGTG-AAATGAGTTTAC  444

seq1  AAGTGCAAACAAAATAAACATATATCATAATGTATGAATTGATTGTTGAT  500
       |||||||   ||||||||||||||||| ||||||||| |||||| ||||
seq2  -AGTGCAA--CAAATAAACATATATCAT-ATGTATGAA-TGATTG-TGAT  488

seq1  ACTTGTCACATTTTTTTCCCATAATAATCTTGAGGAACTCAATATAAGTG  550
      ||||||||||  ||||||||||||||||||||||||   ||||||| | |
seq2  ACTTGTCACA--TTTTTCCCATAATAATCTTGAGGACTCCAATATAGGGG  536

seq1  TGTAGGCTAAAATCTTACCAAGGTC-TTTGTAGTCACAGATTACTTTTGG  599
      |||||||| |||||||  | ||||| |||||||||| ||| |||  ||||
seq2  TGTAGGCT-AAATCTTTACCAGGTCTTTTGTAGTCA-AGA-TAC--TTGG  581

seq1  TATTATTAAAGGTCATCTAAGACTACTG  627
      ||||| ||||||||||||||||||||||
seq2  TATTA-TAAAGGTCATCTAAGACTACTG  608

seq1: chr13_65976161_65977274
seq2: B6Ng01-123N09.g_68_1180 (reverse)

seq1  GCAGCTTATAAGAAGATAATTGTTG-TTCTGTTAA-GTGAATACCACTCT  48
      ||||||||||  ||||| | ||||| ||||||||| ||||   |||||||
seq2  GCAGCTTATAGAAAGATTA-TGTTGTTTCTGTTAATGTGATACCCACTCT  49

seq1  GTAATTGCAAAATAAAAAATTGCAGCTG-TTTTGTTGACATTCTGAATG-  96
      || |||||||||||||||||||| |||| |||||||||||| |||| || 
seq2  GT-ATTGCAAAATAAAAAATTGCCGCTGTTTTTGTTGACATCCTGATTGC  98

seq1  CTTCTATGTAAATACAATTAAAAAAAAAGAAAATGGAAGACATAATTTCC  146
      |||||||||||||||| |   ||||||||||||||| |||||||||||||
seq2  CTTCTATGTAAATACATT---AAAAAAAGAAAATGG-AGACATAATTTCC  144

seq1  TATGATTCAACTCAAAGTCCAAATGACACGGGACATTTATGACCTTCTCA  196
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGATTCAACTCAAAGTCCAAATGACACGGGACATTTATGACCTTCTCA  194

seq1  ACTTTTGTATTACTATGGAAGTTCTGATGAAATCGATTATCATGATTGCC  246
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTTTGTATTACTATGGAAGTTCTGATGAAATCGATTATCATGATTGCC  244

seq1  AATTGTGTTCAT-AAATATGGCTGTTGACACGTAGTCTGGCCCAAGCTTC  295
      |||||||||||| ||| |||||||||||||||||||||||||||||||||
seq2  AATTGTGTTCATAAAAAATGGCTGTTGACACGTAGTCTGGCCCAAGCTTC  294

seq1  TCAGAAGATTGTCCCTGGAGTATATGCAGTGGATATGCATGAAATCATGG  345
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGAAGATTGTCCCTGGAGTATATGCAGTGGATATGCATGAAATCATGG  344

seq1  CACCTGAAGATGGAGAAAATGATCTTCACAGCATGTTTTCAGAAATGTCT  395
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACCTGAAGATGGAGAAAATGATCTTCACAGCATGTTTTCAGAAATGTCT  394

seq1  TGATCAAAATTTTCAGACCTCAGAAAGAGCGCTTAAGGACAAAATTTTCC  445
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATCAAAATTTTCAGACCTCAGAAAGAGCGCTTAAGGACAAAATTTTCC  444

seq1  AGATGTATCCAGGGACCTAACACAGGATGAGTGGGAAGGAGCTGCAGAAT  495
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATGTATCCAGGGACCTAACACAGGATGAGTGGGAAGGAGCTGCAGAAT  494

seq1  ATAATTAAGTGGATCTGCAAACAGCAAGCCTTAAAACAGACACATAGGTA  545
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAATTAAGTGGATCTGCAAACAGCAAGCCTTAAAACAGACACATAGGTA  544

seq1  TAAATTGTGTGTGATTTCTCTGTGCAGAATAAAAGGATTTCACATGTGCT  595
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAATTGTGTGTGATTTCTCTGTGCAGAATAAAAGGATTTCACATGTGCT  594

seq1  CCATCATAGAACCTAGGGGACATGAAGAAGCTGTGTGCTTTCACTATTTC  645
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATCATAGAACCTAGGGGACATGAAGAAGCTGTGTGCTTTCACTATTTC  644

seq1  CTTTTTTCTCCTGAAGGTTTCTCTCATCTTGTGCTGTTTGACTGAACCCA  695
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTTTTCTCCTGAAGGTTTCTCTCATCTTGTGCTGTTTGACTGAACCCA  694

seq1  TTTGCTTTTGAAGGATGATGAATAGTGAGGACAATCATGGAGATTTGAGA  745
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGCTTTTGAAGGATGATGAATAGTGAGGACAATCATGGAGATTTGAGA  744

seq1  AGTGACTGTGGTTTTTACCTATTTACAGTGGAGGACAATTTTACTGACAT  795
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGACTGTGGTTTTTACCTATTTACAGTGGAGGACAATTTTACTGACAT  794

seq1  TTTATATGATTGCAGTTTTAGTCTTAGGTAAGTCATTAACTTTACTTCCT  845
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTATATGATTGCAGTTTTAGTCTTAGGTAAGTCATTAACTTTACTTCCT  844

seq1  GCTTCAATGCCATGAATTAGAAATTTTTAGCTGTGTACACAAACAGTGGG  895
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTCAATGCCATGAATTAGAAATTTTTAGCTGTGTACACAAACAGTGGG  894

seq1  GTTCTGTCCTGTTTTTCCCCTGTAACTTTAGGAACCACTGAACATTAAGT  945
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTCTGTCCTGTTTTTCCCCTGTAACTTTAGGAACCACTGAACATTAAGT  944

seq1  ATAACATTAATCTCTATTTTAATACTTTCAAGTGTGTCATAGGTTAGTTT  995
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAACATTAATCTCTATTTTAATACTTTCAAGTGTGTCATAGGTTAGTTT  994

seq1  AGCTTTAGCATATTGAGCTCCAGTTCATAATGATGGACAACGCGAGAGGC  1045
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTTTAGCATATTGAGCTCCAGTTCATAATGATGGACAACGCGAGAGGC  1044

seq1  TGGATTCTATCTATTGAGTCTTTGAGGATATCATATGTAGAAAGTTATCT  1095
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGATTCTATCTATTGAGTCTTTGAGGATATCATATGTAGAAAGTTATCT  1094

seq1  ATTCACCTCCTTTGAATTC  1114
      |||||||||||||||||||
seq2  ATTCACCTCCTTTGAATTC  1113