BAC Information

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BAC

Clone NameB6Ng01-123N15
Chromosome13 (Build37)
Map Location 60,472,235 - 60,473,075
singlet/doubletsinglet
Overlap genenone
Upstream geneAgtpbp1, Mak10, Golph2, 4921517D22Rik, 1700013B16Rik, EG238662, 4932411G14Rik, Isca1, Zcchc6, LOC100041267, Gas1, EG328264
Downstream geneDapk1, LOC218274, BC051665, 2310051M13Rik, 4930486L24Rik, Tpbpb, Ctla2a, Tpbpa, Ctsj, Ctsq, Ctsr, Cts6, Cts8, Cts8-ps, LOC435362, Cts7
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-123N15.bB6Ng01-123N15.g
ACCDH926908DH926909
length1,260839
definitionDH926908|Mus musculus domesticus DNA, BAC clone: B6Ng01-123N15, 5' end.DH926909|Mus musculus domesticus DNA, BAC clone: B6Ng01-123N15, 3' end.
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattctgccctttatatccctcacagagcgacactggtcggctctatga
taacccttgccacacttagagcaaagagtgagagtccctccctgtttatc
tggagctctgcaatctttcttaaaatgcccaggctttccgcagttaaaac
atgtcctctgattatttctgcccatggagcggttttgggattgaaggatg
gcagccgctaaacctgcattgctgagaggtcccccaagctctcgacagac
cctgagccagtcttgtaagcctttgttctttcttggggctatggccgctc
ggcactcctttgtggcttgctcatagatgagctgttctaccagaggcgca
gcttgctctgactctccaaaaatacgctctgctgcctctgtcattctggc
cacaaaatctgagaaggattcctgaggtccctggattatctttgttaact
gcccagtggcttcccctgctcgggagagcgccttccaggccctaatagcc
gtggaggaaatttgggcataagctccccaatggtagtttgtctgatcagc
agaataagctccctgacccgttaacaagtcaaaagtccaatctctctgct
ctggagtcaaagcagctgcgtttgctcgggcctgcgcttgtgcagcctcg
tgccaaagcgctctccattccatatatttgcccatactagggagagcggc
ttttacaatcgtttgccagtcagcaggagttagtgccatgccggcgagcc
tgtctaactgcaccaaggtaaaattagcattggttccgtatttacggacc
gactcggcaagttctttaatttgtaagtattctactggagcgtggacacg
cccaccctcggctccttcaaagaccggaaatgcctgttgtatttcctttg
ttcctctctgggaatgaatgagtctgcgcactgcctctctgcgcactgcc
tctctgcgcactgcctctctgcgcactgcctctctgcgcactgctctctg
cgcactgcctctctgcgcattgcctctctgcgcatgctgacgcactaccc
aggcggggctccgcatagggcggaaccttgaaacgactgcccgaaggatg
aacagataacgctgcctcgccagcccctttggcctttttctgaccaatat
agctgggctgaatgggctcggctcctccctcagcctgttccccgagaatc
ttctctgttcgagcactcaatagactgggcgttctgtaggactaactcta
tggataccgt
gaattctcttacccagaagtccaggctggaactctctatgtagcgcaagc
tcaaggtagtccccctgcctcactgggattgtaggtgtgagccactgtgc
tgggctgttataatatccactcaacagctattatgagagccttgtcacgt
gcaggaaaccgtcagaagatggtccaggaatggagctgtgtgaagagatt
tccgagtgcctgtgagaacactccaggaaaacaagacaagagtcttgtga
cctcagtttctttgagacatgcaactgttcttagattgtggggttttttt
tttgtgcccctcccaggtgtagtggataggtgtgaacttaattcagattt
ttcattattgcttgctgctgttattcaattaaatgtttaaaccatcctgt
atgtgcctttatgaaagaacatgtttttgctatgtatgcttgtccctgtg
attgtaagcagcttgaattcaggagaactccacttatatgtcctttttag
cactcagaatataaactgtctgagcttctgaataaagttggctatgtatt
gcatgagacttcagtttgcctcattctttggctcattctccagggtccta
tgtgacaggaagccatctttgggaatgatgggtggggcctcctttgggat
ctacaacttccataaggagatagcagtaggaatgacagtagctacaactg
tggtgagtctgaacagagcaaacctaagccagcaaagaggtatgatggga
aagtttgatttccaactggaaaagatataggaataccctaaagagagcca
ctgagctgcagtagctctggtgtgtgtgttgtgtgtgtg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr13_60472235_60473075
seq2: B6Ng01-123N15.g_69_907 (reverse)

seq1  CACACACACACACACACACACACAGAGCTACTGCAGCTCAGTGGCTTCTC  50
      |||||||||| |||||||||| ||||||||||||||||||||||| ||||
seq2  CACACACACA-ACACACACAC-CAGAGCTACTGCAGCTCAGTGGC-TCTC  47

seq1  TTTAGGGTATTCCTATATCTTTTCCAGTTGGAAATCAAACTTTCCCATCA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAGGGTATTCCTATATCTTTTCCAGTTGGAAATCAAACTTTCCCATCA  97

seq1  TACCTCTTTGCTGGCTTAGGTTTGCTCTGTTCAGACTCACCACAGTTGTA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACCTCTTTGCTGGCTTAGGTTTGCTCTGTTCAGACTCACCACAGTTGTA  147

seq1  GCTACTGTCATTCCTACTGCTATCTCCTTATGGAAGTTGTAGATCCCAAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTACTGTCATTCCTACTGCTATCTCCTTATGGAAGTTGTAGATCCCAAA  197

seq1  GGAGGCCCCACCCATCATTCCC-AAGATGGCTTCCTGTCACATAGGACCC  249
      |||||||||||||||||||||| |||||||||||||||||||||||||||
seq2  GGAGGCCCCACCCATCATTCCCAAAGATGGCTTCCTGTCACATAGGACCC  247

seq1  TGGAGAATGAGCCAAAGAATGAGGCAAACTGAAGTCTCATGCAATACATA  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGAGAATGAGCCAAAGAATGAGGCAAACTGAAGTCTCATGCAATACATA  297

seq1  GCCAACTTTATTCAGAAGCTCAGACAGTTTATATTCTGAGTGCTAAAAAG  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCAACTTTATTCAGAAGCTCAGACAGTTTATATTCTGAGTGCTAAAAAG  347

seq1  GACATATAAGTGGAGTTCTCCTGAATTCAAGCTGCTTACAATCACAGGGA  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACATATAAGTGGAGTTCTCCTGAATTCAAGCTGCTTACAATCACAGGGA  397

seq1  CAAGCATACATAGCAAAAACATGTTCTTTCATAAAGGCACATACAGGATG  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGCATACATAGCAAAAACATGTTCTTTCATAAAGGCACATACAGGATG  447

seq1  GTTTAAACATTTAATTGAATAACAGCAGCAAGCAATAATGAAAAATCTGA  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTAAACATTTAATTGAATAACAGCAGCAAGCAATAATGAAAAATCTGA  497

seq1  ATTAAGTTCACACCTATCCACTACACCTGGGAGGGGCACAAAAAAAAAAC  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTAAGTTCACACCTATCCACTACACCTGGGAGGGGCACAAAAAAAAAAC  547

seq1  CCCACAATCTAAGAACAGTTGCATGTCTCAAAGAAACTGAGGTCACAAGA  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCACAATCTAAGAACAGTTGCATGTCTCAAAGAAACTGAGGTCACAAGA  597

seq1  CTCTTGTCTTGTTTTCCTGGAGTGTTCTCACAGGCACTCGGAAATCTCTT  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTTGTCTTGTTTTCCTGGAGTGTTCTCACAGGCACTCGGAAATCTCTT  647

seq1  CACACAGCTCCATTCCTGGACCATCTTCTGACGGTTTCCTGCACGTGACA  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACACAGCTCCATTCCTGGACCATCTTCTGACGGTTTCCTGCACGTGACA  697

seq1  AGGCTCTCATAATAGCTGTTGAGTGGATATTATAACAGCCCAGCACAGTG  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCTCTCATAATAGCTGTTGAGTGGATATTATAACAGCCCAGCACAGTG  747

seq1  GCTCACACCTACAATCCCAGTGAGGCAGGGGGACTACCTTGAGCTTGCGC  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTCACACCTACAATCCCAGTGAGGCAGGGGGACTACCTTGAGCTTGCGC  797

seq1  TACATAGAGAGTTCCAGCCTGGACTTCTGGGTAAGAGAATTC  841
      ||||||||||||||||||||||||||||||||||||||||||
seq2  TACATAGAGAGTTCCAGCCTGGACTTCTGGGTAAGAGAATTC  839