BAC Information

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BAC

Clone NameB6Ng01-123O10
Chromosome13 (Build37)
Map Location 10,146,566 - 10,264,467
singlet/doubletdoublet
Overlap geneChrm3
Upstream geneLarp5, EG667727, LOC100039719, Dip2c, LOC666986, Zmynd11, LOC100039604
Downstream genenone
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-123O10.bB6Ng01-123O10.g
ACCDH926946DH926947
length4781,119
definitionDH926946|Mus musculus domesticus DNA, BAC clone: B6Ng01-123O10, 5' end.DH926947|Mus musculus domesticus DNA, BAC clone: B6Ng01-123O10, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(10,263,984 - 10,264,467)(10,146,566 - 10,147,712)
sequence
tcccggtttgaacataattctgtatgagttgtgtacacattttatacttc
tacagcctatgattttagattttttttaaccttcttgcttccttttctcc
aatgtccttgaaccttgtagggtgtgagtatgatgcagattcctgcttag
aagtgtgtagttgccttttctttgcacttgtatccattatagatctctat
taatgaccaaagaagtgtcaaaaaaagaggcttctctgatgagggcttag
agcttccctatgggtatatgggtataaagataagtatatagaaggcagtt
tggtattacatccattcagcaaaaacacaggagtaggttcttgcctagga
cctaggagcttctcagccacgggttcttggctagggtagtcatacaccca
tgtacttatgaatggtataattggatattagcagattataaaaaggaagc
atgaagtgtggagggggatatggggaag
gaattccagggagataaacattgtaaatgtacacagatttatcagtctcc
caagaaggaaaaaacagagccagtttctttttttcttcaacattccaaat
tcttgaagcaatggactctttcaataatttcagtctcctatatatgtttt
tatttttatcacttaggaacatacaagctaagaatacaggttgcttgctg
agtaagaaagatgtccatgtatttggagtttgacatgtttttaatattaa
aatagagttaattcactcagttaccataagccaggcaaactctcagaacc
ttgagagttctgatttctcatagcaatctcatgcaagtggcagcatcacc
atcaatatcactgtcaccatcaccatcatcatcaccaccatcactaccag
catcaccatcactaccagcatcaccatcatccttatatggaagaaagcag
cacccacagtgaacaagtaatgtgtccccaggaaagaacacaggtagctt
gctgtatttgactatagtagatgaatgtgttttaattattcttctcatag
ggaaattcactctgttgtttgagtttagaaattgacacattttcacacaa
ctgaaatgctagcagtgagaagaaacaaaattgcatgggtgaggagaatt
cagggacttactgaggagggacacagtgtgctacagcctgggctttaggt
cttggctacctgtgtggtggtttttatattttacattttacatttatatt
tatttatttattcatccattcattcattcattttacatttgttcatttat
tcattcattcttgcttgtttgctttacagtgttggggattgcatccaggg
cttcttgcatgccagacaagtactttaccactgacctaaacactcgggct
ccctcaatttatttttggtagattaaacccatttctatttaaatctaatg
tttgagaactatatatcccaaactgaaagtatactccaatattatacaaa
ttaacatgaaattatgaccttttaaaatggacaacaaatacttctgagca
gcagaagtgatgagttctgtctttgtaatccttgggttgcttcaaggaga
cagggggttcctacttgac
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr13_10263984_10264467
seq2: B6Ng01-123O10.b_45_528 (reverse)

seq1  CTTCCCCATATCCCCCTCCACACTTCATGCTTCCTTTTTATAATCTGCTA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCCCCATATCCCCCTCCACACTTCATGCTTCCTTTTTATAATCTGCTA  50

seq1  ATATCCAATTATACCATTCATAAGTACATGGGTGTATGACTACCCTAGCC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATCCAATTATACCATTCATAAGTACATGGGTGTATGACTACCCTAGCC  100

seq1  AAGAACCCGTGGCTGAGAAGCTCCTAGGTCCTAGGCAAGAACCTACTCCT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAACCCGTGGCTGAGAAGCTCCTAGGTCCTAGGCAAGAACCTACTCCT  150

seq1  GTGTTTTTGCTGAATGGATGTAATACCAAACTGCCTTCTATATACTTATC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTTTTTGCTGAATGGATGTAATACCAAACTGCCTTCTATATACTTATC  200

seq1  TTTATACCCATATACCCATAGGGAAGCTCTAAGCCCTCATCAGAGAAGCC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTATACCCATATACCCATAGGGAAGCTCTAAGCCCTCATCAGAGAAGCC  250

seq1  TCTTTTTTTGACACTTCTTTGGTCATTAATAGAGATCTATAATGGATACA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTTTTTTGACACTTCTTTGGTCATTAATAGAGATCTATAATGGATACA  300

seq1  AGTGCAAAGAAAAGGCAACTACACACTTCTAAGCAGGAATCTGCATCATA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGCAAAGAAAAGGCAACTACACACTTCTAAGCAGGAATCTGCATCATA  350

seq1  CTCACACCCTACAAGGTTCAAGGACATTGGAGAAAAGGAAGCAAGAAGGT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCACACCCTACAAGGTTCAAGGACATTGGAGAAAAGGAAGCAAGAAGGT  400

seq1  TAAAAAAAATCTAAAATCATAGGCTGTAGAAGTATAAAATGTGTACACAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAAAAAATCTAAAATCATAGGCTGTAGAAGTATAAAATGTGTACACAA  450

seq1  CTCATACAGAATTATGTTCAAACCGGGAGAATTC  484
      ||||||||||||||||||||||||||||||||||
seq2  CTCATACAGAATTATGTTCAAACCGGGAGAATTC  484

seq1: chr13_10146566_10147712
seq2: B6Ng01-123O10.g_68_1186

seq1  GAATTCCAGGGAGATAAACATTGTAAATGTACACAGATTTATCAGTCTCC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCAGGGAGATAAACATTGTAAATGTACACAGATTTATCAGTCTCC  50

seq1  CAAGAAGGAAAAAACAGAGCCAGTTTCTTTTTTTCTTCAACATTCCAAAT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGAAGGAAAAAACAGAGCCAGTTTCTTTTTTTCTTCAACATTCCAAAT  100

seq1  TCTTGAAGCAATGGACTCTTTCAATAATTTCAGTCTCCTATATATGTTTT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTGAAGCAATGGACTCTTTCAATAATTTCAGTCTCCTATATATGTTTT  150

seq1  TATTTTTATCACTTAGGAACATACAAGCTAAGAATACAGGTTGCTTGCTG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTTTTATCACTTAGGAACATACAAGCTAAGAATACAGGTTGCTTGCTG  200

seq1  AGTAAGAAAGATGTCCATGTATTTGGAGTTTGACATGTTTTTAATATTAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTAAGAAAGATGTCCATGTATTTGGAGTTTGACATGTTTTTAATATTAA  250

seq1  AATAGAGTTAATTCACTCAGTTACCATAAGCCAGGCAAACTCTCAGAACC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAGAGTTAATTCACTCAGTTACCATAAGCCAGGCAAACTCTCAGAACC  300

seq1  TTGAGAGTTCTGATTTCTCATAGCAATCTCATGCAAGTGGCAGCATCACC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGAGAGTTCTGATTTCTCATAGCAATCTCATGCAAGTGGCAGCATCACC  350

seq1  ATCAATATCACTGTCACCATCACCATCATCATCACCACCATCACTACCAG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCAATATCACTGTCACCATCACCATCATCATCACCACCATCACTACCAG  400

seq1  CATCACCATCACTACCAGCATCACCATCATCCTTATATGGAAGAAAGCAG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCACCATCACTACCAGCATCACCATCATCCTTATATGGAAGAAAGCAG  450

seq1  CACCCACAGTGAACAAGTAATGTGTCCCCAGGAAAGAACACAGGTAGCTT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACCCACAGTGAACAAGTAATGTGTCCCCAGGAAAGAACACAGGTAGCTT  500

seq1  GCTGTATTTGACTATAGTAGATGAATGTGTTTTAATTATTCTTCTCATAG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGTATTTGACTATAGTAGATGAATGTGTTTTAATTATTCTTCTCATAG  550

seq1  GGAAATTCACTCTGTTGTTTGAGTTTAGAAATTGACACATTTTCACACAA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAAATTCACTCTGTTGTTTGAGTTTAGAAATTGACACATTTTCACACAA  600

seq1  CTGAAATGCTAGCAGTGAGAAGAAACAAAATTGCATGGGTGAGGAGAATT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGAAATGCTAGCAGTGAGAAGAAACAAAATTGCATGGGTGAGGAGAATT  650

seq1  CAGGGACTTACTGAGGAGGGACACAGTGTGCTACAGCCTGGGCTTTAGGT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGGACTTACTGAGGAGGGACACAGTGTGCTACAGCCTGGGCTTTAGGT  700

seq1  CTTGGCTACCTGTGTGGTGGTTTTTATATTTTACATTTTACATTTATATT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGGCTACCTGTGTGGTGGTTTTTATATTTTACATTTTACATTTATATT  750

seq1  TATTTATTTATTCATCCATTCATTCATTCATTTTACATTTGTTCATTTAT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTTATTTATTCATCCATTCATTCATTCATTTTACATTTGTTCATTTAT  800

seq1  TCATTCATTCTTGCTTGTTTGCTTTACAGTGTTGGGGATTGCATCCAGGG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATTCATTCTTGCTTGTTTGCTTTACAGTGTTGGGGATTGCATCCAGGG  850

seq1  CTTCTTGCATGCCAGACAAGTACTTTACCACTGACCTAAACACTCGGGCT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCTTGCATGCCAGACAAGTACTTTACCACTGACCTAAACACTCGGGCT  900

seq1  CCCCTTCATTTTATTTTTGGTAGATTAAACCCATTTCTATTTAAAATCTA  950
      |||  ||| ||||||||||||||||||||||||||||||||| |||||||
seq2  CCC--TCAATTTATTTTTGGTAGATTAAACCCATTTCTATTT-AAATCTA  947

seq1  ATGTTTGAGAAACTATTAATATCCCAAACTGAAAGTAATAAACTCACAAT  1000
      ||||||||| ||||||  |||||||||||||||||   || |||| ||||
seq2  ATGTTTGAG-AACTAT--ATATCCCAAACTGAAAG---TATACTC-CAAT  990

seq1  ATAATTAACAAAATTAAACATGAATATAATGACCTTTTAAAAAATGACCA  1050
      || ||  |||||  | |||||||| || ||||||||||  ||||||  ||
seq2  ATTAT--ACAAA--TTAACATGAA-ATTATGACCTTTT--AAAATGGACA  1033

seq1  ACAATATCTTCTGAGCAAGCAGAAGTGACATGATTCCTGTCTTTGTAAAT  1100
      ||||   ||||||||| ||||||||||  |||| | ||||||||||||  
seq2  ACAAATACTTCTGAGC-AGCAGAAGTG--ATGAGTTCTGTCTTTGTAA--  1078

seq1  TCCTTGGTGTTGGCTTCATAGGAGACAGGTGGGTTTCCCTACTTGAC  1147
      ||||||| ||| |||||| |||||||||| |||||  ||||||||||
seq2  TCCTTGG-GTT-GCTTCA-AGGAGACAGG-GGGTT--CCTACTTGAC  1119