BAC Information

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BAC

Clone NameB6Ng01-124E12
Chromosome13 (Build37)
Map Location 15,687,061 - 15,709,225
singlet/doubletdoublet
Overlap geneGli3
Upstream geneMrpl32, Psma2, AW209491, EG665099, LOC670994, EG625121
Downstream geneLOC665157, Inhba, LOC625181
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-124E12.bB6Ng01-124E12.g
ACCDH927228DH927229
length1,163916
definitionDH927228|Mus musculus domesticus DNA, BAC clone: B6Ng01-124E12, 5' end.DH927229|Mus musculus domesticus DNA, BAC clone: B6Ng01-124E12, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(15,708,043 - 15,709,225)(15,687,061 - 15,687,972)
sequence
gaattctcatattcgatgttgaagaaaccctttgaatgacagaaacatga
tgcagtcattgtccatttctaagagcagtttgatgtgacaacctagagac
atggcacctatggcatgacccacttatgaccttttaaaattaatttcatg
attttgggctaaaagaaatttcaataaatcctaggattatttctagtact
gtattttagttcatttaaatgtctatcctcgagctgctttgctcaaccat
aaactgtggacaacagtgtgcaagcaaggagtgtaactaaaggcatttca
tgtaacaaacctagtttttaaacacaggcttacatatttccgtacatatt
tataaggctcctgggttattattgggctataattgcagttgttctaacac
ctaataaaccacggttggaaaaacaaaagcaggttaatttgtgatttcct
ctactcattcagaggcaaattaagtgtcaaacagctaatacacaacatat
ttcattttatgagattttaatttaattctgcaccgtatcattgatgcctt
aatatagggtggtttatctaaacaagaggagcaatttataaaccttttca
atagaatctctaatgatggaatatgataacataattaccgcagtgcctgc
tatccttctgaacactggtctgtcagcatttccatcaacacaggcccttg
tttttcagagacttataatttagtttctaaagttggcaccagaagaacaa
ttgtgtttacaaataatgagaatatcgccaagttttatcttcctgtatta
aaatattcactctaaaagcttattaagctaattgattttcttttctacga
ggcaattatacagcaaacatcttggaaatcaaagtctggataggatactt
tttattttacagttatactgggaggtttgggtaaagggccacatctacta
tcagtactctcagctttaacatcacagtgtgtcccgcatgacacaagggg
tactgacagctgcgtcatcatggagcagactagaggaaatttgtgcatta
gactaactgtaagcattcatttgaatacccaaagaatacgttaggcagac
tggaagtgtttttattgaggccttcctgaagcaaaacctccattttagtg
aaggcagggccca
gaattcagaataaacccacgccgtcttgaacggcctgctgtgaaaacatt
gctcttagccctagcatgaaggaaattcccaaggagttcttaaagatcct
acctgttaaacacagttattttggctgttgggttccagagtgagttttgg
aggacattccagcaccacgaagagcctgaaagctctgatcataacatcgt
atcccctcgtggactgatattcctgttcttttctcagtggtaaagaggta
cacagcatcccatcggagatagatgtgttcctggaagaatgtctgtagtt
cgttgctttaacaaatgtctttgaatccccaagtcatcctggtgttgtca
cttctttatgcccagttgtgttgtctcatccttaacacagacgagaaaat
ggatagaaagtgtatcgattgtgatacctgtcatccatcctgtttgcacc
taaatgctatgagagttcactgctgctcccatggtataagcactctcagt
ttggaatttctgtgggaaacgcttaacaaatccattcattaggaaatcta
gggcttttgaagtaaagcaaaatgtccctttaaaattagtagaagggttg
gtactgtggctcactggaggagagcttatgtgttttgcccaaggtcctgg
gttcagcctatgacaccaggagacactgtcatgaatgagcttcataagtg
ctttgtaatgcaggcagacagacaccttcctcagttgatgctgcacactc
aacattgttaagcacacccatgctagcctcagattcggtattgactcctg
atatgaactggagctttatgcctgatcctgtatcacacaactggactggc
cttactacgctctcctggggactggctccctcagagccctttgttgaggg
tccatgctaactggac
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr13_15708043_15709225
seq2: B6Ng01-124E12.b_44_1206 (reverse)

seq1  TGGGCCCTGCACTTCACTAAAATGAAGCTATTTGCTTTAGGAAGAGCTCA  50
      |||||||||| ||||||||||||| || | ||||||| ||||||  ||||
seq2  TGGGCCCTGC-CTTCACTAAAATGGAGGT-TTTGCTTCAGGAAGGCCTCA  48

seq1  ATAAAATAACCTCATGTATTTACTATACTGTATTTATTTGGGTCTCTAAA  100
      ||||||  || ||  ||  |  ||| || ||| || ||||||| |  |||
seq2  ATAAAAACACTTCCAGT-CTGCCTA-AC-GTA-TTCTTTGGGTATTCAAA  94

seq1  TAAATGCTTACAGTTAGTGTATAATGGCACCAAATTTCTTCTAGTCTTGC  150
      | ||||||||||||||  || |||| ||| |||||||| ||||||| |||
seq2  TGAATGCTTACAGTTA--GTCTAAT-GCA-CAAATTTCCTCTAGTC-TGC  139

seq1  TCCATGATGACGCAGCTGTCTGTACCCCTTCTGTCAGGCGTGGACACACC  200
      |||||||||||||||||||| ||||||||| ||||| ||| ||||||| |
seq2  TCCATGATGACGCAGCTGTCAGTACCCCTTGTGTCATGCG-GGACACA-C  187

seq1  TGTGATTGTTAAAGCTGAGAGTATTGATAGTAAATGTGGCCCCTTTACCC  250
      ||||| ||||||||||||||||| |||||||| |||||| ||||||||||
seq2  TGTGA-TGTTAAAGCTGAGAGTACTGATAGTAGATGTGG-CCCTTTACCC  235

seq1  AAACCTCCCCAGTATTAACTGTAAAATATAAAAGTATCCTATCCAGACTT  300
      |||||| ||||||| ||||||||||||| |||||||||||||||||||||
seq2  AAACCT-CCCAGTA-TAACTGTAAAATA-AAAAGTATCCTATCCAGACTT  282

seq1  TGAATTCCAAGATGTTTGCTGTATAATTGCCTCCTAGAAAATGAAATCAA  350
      ||| ||||||||||||||||||||||||||||| |||||||  |||||||
seq2  TGATTTCCAAGATGTTTGCTGTATAATTGCCTCGTAGAAAAGAAAATCAA  332

seq1  GTGAGCTTACTAAGCTTTTAGAGTGAATATTTTAATTACAGGAAGATAAA  400
       | |||||| ||||||||||||||||||||||||| ||||||||||||||
seq2  -TTAGCTTAATAAGCTTTTAGAGTGAATATTTTAA-TACAGGAAGATAAA  380

seq1  ACTTGGCGATATTCTCATTATTTTGTAAACACAATTGTTCTTCTGGTGCC  450
      |||||||||||||||||||| |||||||||||||||||||||||||||||
seq2  ACTTGGCGATATTCTCATTA-TTTGTAAACACAATTGTTCTTCTGGTGCC  429

seq1  AACTTTAGAAACTAAATTATAAGTCTCTGAAAAACAAGGGCCTGTGTTGA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTTTAGAAACTAAATTATAAGTCTCTGAAAAACAAGGGCCTGTGTTGA  479

seq1  TGGAAATGCTGACAGACCAGTGTTCAGAAGGATAGCAGGCACTGCGGTAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGAAATGCTGACAGACCAGTGTTCAGAAGGATAGCAGGCACTGCGGTAA  529

seq1  TTATGCTATCATATTCCATCATTAGAGATTCTATTGAAAAGGTTTATAAA  600
      ||||| ||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATGTTATCATATTCCATCATTAGAGATTCTATTGAAAAGGTTTATAAA  579

seq1  TTGCTCCTCTT-TTTAGATAAACCACCCTATATTAAGGCATCAATGATAC  649
      ||||||||||| ||||||||||||||||||||||||||||||||||||||
seq2  TTGCTCCTCTTGTTTAGATAAACCACCCTATATTAAGGCATCAATGATAC  629

seq1  GGTGCAGAATTAAATTAAAATCTCATAAAATGAAATATGTTCTGTATTAG  699
      ||||||||||||||||||||||||||||||||||||||||| ||||||||
seq2  GGTGCAGAATTAAATTAAAATCTCATAAAATGAAATATGTTGTGTATTAG  679

seq1  CTGTTTGACACTTAATTTGCCTCTGAATGAGTAGAGGAAATCACAAATTA  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTTTGACACTTAATTTGCCTCTGAATGAGTAGAGGAAATCACAAATTA  729

seq1  ACCTGCTTTTGTTTTTCCAACCGTGGCTTATTAGGTGTTAGAACAACTGC  799
      |||||||||||||||||||||||||| |||||||||||||||||||||||
seq2  ACCTGCTTTTGTTTTTCCAACCGTGGTTTATTAGGTGTTAGAACAACTGC  779

seq1  AATTATAGCCCAATAATAACCCAGGAGCCTTATAAATATGTACGGAAATA  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTATAGCCCAATAATAACCCAGGAGCCTTATAAATATGTACGGAAATA  829

seq1  TGTAAGCCTGTGTTTAAAAACTAGGTTTGTTACATGAAATGCCTTTAGTT  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTAAGCCTGTGTTTAAAAACTAGGTTTGTTACATGAAATGCCTTTAGTT  879

seq1  ACACTCCTTGCTTGCACACTGTTGTCCACAGTTTATGGTTGAGCAAAGCA  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACTCCTTGCTTGCACACTGTTGTCCACAGTTTATGGTTGAGCAAAGCA  929

seq1  GCTCGAGGATAGACATTTAAATGAACTAAAATACAGTACTAGAAATAATC  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTCGAGGATAGACATTTAAATGAACTAAAATACAGTACTAGAAATAATC  979

seq1  CTAGGATTTATTGAAATTTCTTTTAGCCCAAAATCATGAAATTAATTTTA  1049
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAGGATTTATTGAAATTTCTTTTAGCCCAAAATCATGAAATTAATTTTA  1029

seq1  AAAGGTCATAAGTGGGTCATGCCATAGGTGCCATGTCTCTAGGTTGTCAC  1099
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGGTCATAAGTGGGTCATGCCATAGGTGCCATGTCTCTAGGTTGTCAC  1079

seq1  ATCAAACTGCTCTCTGAAATGGACAATGACTGCATCATGTTTATGTCATT  1149
      |||||||||||||  ||||||||||||||||||||||||||| |||||||
seq2  ATCAAACTGCTCTTAGAAATGGACAATGACTGCATCATGTTTCTGTCATT  1129

seq1  CAAATAGTTTCTTGAACATTGAATATGAGAATTC  1183
      ||||  ||||||| ||||| ||||||||||||||
seq2  CAAAGGGTTTCTTCAACATCGAATATGAGAATTC  1163

seq1: chr13_15687061_15687972
seq2: B6Ng01-124E12.g_66_974

seq1  GAATTCAGAATAAACCCACGCCGTCTTGAACGGCCTGCTGTGAAAACATT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAGAATAAACCCACGCCGTCTTGAACGGCCTGCTGTGAAAACATT  50

seq1  GCTCTTAGCCCTAGCATGAAGGAAATTCCCAAGGAGTTCTTAAAGATCCT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTCTTAGCCCTAGCATGAAGGAAATTCCCAAGGAGTTCTTAAAGATCCT  100

seq1  ACCTGTTAAACACAGTTATTTTGGCTGTTGGGTTCCAGAGTGAGTTTTGG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTGTTAAACACAGTTATTTTGGCTGTTGGGTTCCAGAGTGAGTTTTGG  150

seq1  AGGACATTCAAGCAGCACAAAGAGCCTGAAAGCTCTGAGCATAACATCGT  200
      ||||||||| |||| ||| ||||||||||||||||||| |||||||||||
seq2  AGGACATTCCAGCACCACGAAGAGCCTGAAAGCTCTGATCATAACATCGT  200

seq1  ATCCCCACGTGGACTGATATTCCTGTTCTTTTCTCAGTGGTAAAGAGGTA  250
      |||||| |||||||||||||||||||||||||||||||||||||||||||
seq2  ATCCCCTCGTGGACTGATATTCCTGTTCTTTTCTCAGTGGTAAAGAGGTA  250

seq1  CACAGCATCCCATCAGAGATAGATGTGTTCCTGGAAGAATGTCTGTAGTT  300
      |||||||||||||| |||||||||||||||||||||||||||||||||||
seq2  CACAGCATCCCATCGGAGATAGATGTGTTCCTGGAAGAATGTCTGTAGTT  300

seq1  CGTTGCTTTAACGAATGTCTTTGAATCCCCAAGTCATCCTGGTGTTGTCA  350
      |||||||||||| |||||||||||||||||||||||||||||||||||||
seq2  CGTTGCTTTAACAAATGTCTTTGAATCCCCAAGTCATCCTGGTGTTGTCA  350

seq1  CTTCTTTATGCCCAGTTGTGTTGTCTCATCCTTAACACAGACGAGAAAAT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCTTTATGCCCAGTTGTGTTGTCTCATCCTTAACACAGACGAGAAAAT  400

seq1  GGATAGAAAGTGTATCGATTGTGATACCTGTCATCCATCCTGTTTGCACC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGATAGAAAGTGTATCGATTGTGATACCTGTCATCCATCCTGTTTGCACC  450

seq1  TAGATGCGATGAGAGTTCACTGCTGCTCCCATGGTATAAGCACTCTCAGT  500
      || |||| ||||||||||||||||||||||||||||||||||||||||||
seq2  TAAATGCTATGAGAGTTCACTGCTGCTCCCATGGTATAAGCACTCTCAGT  500

seq1  TTGGAATTTCTGTGGGAAACGCTTAGCAAATCCATTCATTAGGAAATCTA  550
      ||||||||||||||||||||||||| ||||||||||||||||||||||||
seq2  TTGGAATTTCTGTGGGAAACGCTTAACAAATCCATTCATTAGGAAATCTA  550

seq1  GGGCATTTTGAAGTTAAGCAAAATGTCCCTTTAAAATTAAAAGAAGGGTT  600
      |||| ||||||||| ||||||||||||||||||||||||  |||||||||
seq2  GGGC-TTTTGAAGTAAAGCAAAATGTCCCTTTAAAATTAGTAGAAGGGTT  599

seq1  GGTACTGTGGCTCAGTGGAGGAGAGCTTATGTGTTTTGCCCAAGGTCCTG  650
      |||||||||||||| |||||||||||||||||||||||||||||||||||
seq2  GGTACTGTGGCTCACTGGAGGAGAGCTTATGTGTTTTGCCCAAGGTCCTG  649

seq1  GGTTCAGCCTATGGTACCAGGAGACACTGTCATGAATGAGCTTCATAAGT  700
      |||||||||||||  |||||||||||||||||||||||||||||||||||
seq2  GGTTCAGCCTATGACACCAGGAGACACTGTCATGAATGAGCTTCATAAGT  699

seq1  GCTTTGTAATGCAGGGCAGACAGACACCTTCCTCAGTTGATGCAGCACAC  750
      ||||||||||||| ||||||||||||||||||||||||||||| ||||||
seq2  GCTTTGTAATGCA-GGCAGACAGACACCTTCCTCAGTTGATGCTGCACAC  748

seq1  AGAACATTGTTAAGCACACACATGCTAGCATCACATTTGGTTTTGACTCC  800
        ||||||||||||||||| ||||||||| ||| ||| ||| ||||||||
seq2  TCAACATTGTTAAGCACACCCATGCTAGCCTCAGATTCGGTATTGACTCC  798

seq1  TGATATGAACTGGAGCTTTATGCCAGATCCTGTATCAGAAAACTGGACTG  850
      |||||||||||||||||||||||| |||||||||||| | ||||||||||
seq2  TGATATGAACTGGAGCTTTATGCCTGATCCTGTATCACACAACTGGACTG  848

seq1  GCCTTACTAGGCTCTCCTGGGGACTGTCTCCCTTAGAGCCCTTTGTTGTG  900
      ||||||||| |||||||||||||||| |||||| |||||||||||||| |
seq2  GCCTTACTACGCTCTCCTGGGGACTGGCTCCCTCAGAGCCCTTTGTTGAG  898

seq1  GGTTCCATGCTA  912
      || |||||||||
seq2  GG-TCCATGCTA  909