BAC Information

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BAC

Clone NameB6Ng01-124H16
Chromosome13 (Build37)
Map Location 5,202,619 - 5,412,755
singlet/doubletdoublet
Overlap genenone
Upstream geneAkr1c13, Akr1c19, Akr1c12, Akr1c6, Akr1c20, Akr1c21, Akr1e1, EG432721, EG432723
Downstream gene1700016G22Rik, Klf6, LOC100039388, LOC100039395
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-124H16.bB6Ng01-124H16.g
ACCDH927376DH927377
length1,0351,038
definitionDH927376|Mus musculus domesticus DNA, BAC clone: B6Ng01-124H16, 5' end.DH927377|Mus musculus domesticus DNA, BAC clone: B6Ng01-124H16, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(5,411,714 - 5,412,755)(5,202,619 - 5,203,670)
sequence
gaattctttcagacagaaacaattatggatcagagttgtgactgtgggat
ggcaaccccatccctcaattgatgtcctgtcttcctgctggaggtagatt
ctgtaagttccctctccctactgtctggtatttcatataaggtccctccc
tttgagtcctgagagtctctcacctcccaggtctctggtgcattctggag
ggtcctccaacctcctatctctggaggttgactgtttacattctttctgc
tggccctcagggcttcagtcttttgcctcaccagatcaggttcccctttt
cccaacccttttccactttcccactcccctcaccccaggtccctccctcc
ctttccacttgtgattgctttcttctctctcccaagtgggactgaggcat
cctcaattgggcacttcagtttgtccacaaagttcaaaaaggtcaacaag
ctgaaaatgtaaagatttcttaacccacacttcttactttaaggaaaatg
gaactagaatgactacccaagtctaagtgatcagacacctagctgcccat
tcaacgtagtcttagatttttaacttctaatgatccaggcttcctctctg
agacaagggaataattacagtgaggtgaaaattaaatacagttttgtata
agtcactcaggatagttgcagtgatgtaaactgctaccaactgctagctc
tttgacttttcattgagcctcagatattagcttattttatgtattcattt
atttttcagggagggattgctgttgagataaggagtcctgtagcccaagt
tggccttaaaattttaatgttgtgggatcttgacttgaaatctgaaacct
tttccactggactgtaccctggtctacaagagaccactatgtcttttaca
atggatcagcattccagacagacatatctcttccataccagcttaatact
gtttcttaaaatgctaagattaacagttctcttggctgtgtgtgtgatag
ttatttcctcctgagttaaaacagacgagggattg

gaattcagaagactagagagaaggaaataaactccactggccattctgtt
aaataaagctaatggctaagactgttttcattttagtttaaacatcattt
acttttgtcatgtggggatagtgtaactggattataactatttataagac
agaagcttacattttgatcgtacatttccaaacctgtgcagttcctgacc
tgacacatgacacaagacagtatctgtcatctttatactctctcttagta
gagaaccccatctcagggtaatgggtgcttttgtgtctgactattttatc
ccatccttaggaaattgaggcttatttagttggaattaaaacgtgttctc
ccaaattgggttatgttccctgattcttatatataacagttcatatatgc
tttgtgtttacaatggaaacatattgttttgatactggaacccgaagcaa
agttaatgaactatcataagcaatgaaccaatgctgcttgaacatgactt
tgggcagataataagctctcacatctgttagacacatagacatagtgaaa
cttcaatgtgatgagctttagcttttctgtcaacatacaagtatcccagt
tgcatcccatgctttctgacactgatttttgtgcatccctttctttttat
gaagcttagaaacatataatttacaccaaaataaaaacttattgaatctc
agttcttttgtacttgtactttgcagcttatattacatcatggtcattca
catggatttattccttatcctcataaaatccttagccctgacctgtcttg
ttatgatcaccacaagcttaatttagtacagaaacaaaacaactttcaga
aaagcttaagaataaacggctgtagcaaccacatgttgtggaatctttaa
atcactgtactttatgtcagcaccagttactcatgcctttattttcagca
atcagagaccaaggcagaaggttgcatgagtcaaggccagtctagactgg
aaaataaaccctatctcattaatgggaaataccaaagc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr13_5411714_5412755
seq2: B6Ng01-124H16.b_47_1081 (reverse)

seq1  CAATCCCTCTGTCCTGTTTTAACTCAGGAGGAAAATAACTTATCACACAC  50
      ||||||||| || |||||||||||||||||| ||||||| ||||||||||
seq2  CAATCCCTC-GT-CTGTTTTAACTCAGGAGG-AAATAAC-TATCACACAC  46

seq1  ACAGCCAAGAGAATTGTTAATCTTAGCATTTTAAGAAACAGTATTAAGCT  100
      ||||||||||||| ||||||||||||||||||||||||||||||||||||
seq2  ACAGCCAAGAGAACTGTTAATCTTAGCATTTTAAGAAACAGTATTAAGCT  96

seq1  GGTATGGGAGAGATATGTCTGTCTGGAATGCTGATCCATTGTGAAAGACA  150
      ||||||| |||||||||||||||||||||||||||||||||| |||||||
seq2  GGTATGGAAGAGATATGTCTGTCTGGAATGCTGATCCATTGTAAAAGACA  146

seq1  TAGTGGTCTCTTTGTAAGACCAGGGTACAGTCCAGTGGGAAAAGGTTTCA  200
      |||||||||| |||| |||||||||||||||||||| |||||||||||||
seq2  TAGTGGTCTC-TTGT-AGACCAGGGTACAGTCCAGT-GGAAAAGGTTTCA  193

seq1  GATTTCAAGTCAAGATCCCACAACATTAAAATTTTAAGGCCAACTTGGGC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTTCAAGTCAAGATCCCACAACATTAAAATTTTAAGGCCAACTTGGGC  243

seq1  TACAGGACTCCTTATCTCAACAGCAATCCCTCCCTGAAAAATAAATGAAT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACAGGACTCCTTATCTCAACAGCAATCCCTCCCTGAAAAATAAATGAAT  293

seq1  ACATAAAATAAGCTAATATCTGAGGCTCAATGAAAAGTCAAAGAGCTAGC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATAAAATAAGCTAATATCTGAGGCTCAATGAAAAGTCAAAGAGCTAGC  343

seq1  AGTTGGTAGCAGTTTACATCACTGCAACTATCCTGAGTGACTTATACAAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTGGTAGCAGTTTACATCACTGCAACTATCCTGAGTGACTTATACAAA  393

seq1  ACTGTATTTAATTTTCACCTCACTGTAATTATTCCCTTGTCTCAGAGAGG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGTATTTAATTTTCACCTCACTGTAATTATTCCCTTGTCTCAGAGAGG  443

seq1  AAGCCTGGATCATTAGAAGTTAAAAATCTAAGACTACGTTGAATGGGCAG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCCTGGATCATTAGAAGTTAAAAATCTAAGACTACGTTGAATGGGCAG  493

seq1  CTAGGTGTCTGATCACTTAGACTTGGGTAGTCATTCTAGTTCCATTTTCC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAGGTGTCTGATCACTTAGACTTGGGTAGTCATTCTAGTTCCATTTTCC  543

seq1  TTAAAGTAAGAAGTGTGGGTTAAGAAATCTTTACATTTTCAGCTTGTTGA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAAGTAAGAAGTGTGGGTTAAGAAATCTTTACATTTTCAGCTTGTTGA  593

seq1  CCTTTTTGAACTTTGTGGACAAACTGAAGTGCCCAATTGAGGATGCCTCA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTTTTGAACTTTGTGGACAAACTGAAGTGCCCAATTGAGGATGCCTCA  643

seq1  GTCCCACTTGGGAGAGAGAAGAAAGCAATCACAAGTGGAAAGGGAGGGAG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCCCACTTGGGAGAGAGAAGAAAGCAATCACAAGTGGAAAGGGAGGGAG  693

seq1  GGACCTGGGGTGAGGGGAGTGGGAAAGTGGAAAAGGGTTGGGAAAAGGGG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGACCTGGGGTGAGGGGAGTGGGAAAGTGGAAAAGGGTTGGGAAAAGGGG  743

seq1  AACCTGATCTGGTGAGGCAAAAGACTGAAGCCCTGAGGGCCAGCAGAAAG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACCTGATCTGGTGAGGCAAAAGACTGAAGCCCTGAGGGCCAGCAGAAAG  793

seq1  AATGTAAACAGTCAACCTCCAGAGATAGGAGGTTGGAGGACCCTCCAGAA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGTAAACAGTCAACCTCCAGAGATAGGAGGTTGGAGGACCCTCCAGAA  843

seq1  TGCACCAGAGACCTGGGAGGTGAGAGACTCTCAGGACTCAAAGGGAGGGA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCACCAGAGACCTGGGAGGTGAGAGACTCTCAGGACTCAAAGGGAGGGA  893

seq1  CCTTATATGAAATACCAGACAGTAGGGAGAGGGAACTTACAGAATCTACC  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTATATGAAATACCAGACAGTAGGGAGAGGGAACTTACAGAATCTACC  943

seq1  TCCAGCAGGAAGACAGGACATCAATTGAGGGATGGGGTTGCCATCCCACA  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCAGCAGGAAGACAGGACATCAATTGAGGGATGGGGTTGCCATCCCACA  993

seq1  GTCACAACTCTGATCCATAATTGTTTCTGTCTGAAAGAATTC  1042
      ||||||||||||||||||||||||||||||||||||||||||
seq2  GTCACAACTCTGATCCATAATTGTTTCTGTCTGAAAGAATTC  1035


seq1: chr13_5202619_5203670
seq2: B6Ng01-124H16.g_69_1106

seq1  GAATTCAGAAGACTAGAGAGAAGGAAATAAACTCCACTGGCCATTCTGTT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAGAAGACTAGAGAGAAGGAAATAAACTCCACTGGCCATTCTGTT  50

seq1  AAATAAAGCTAATGGCTAAGACTGTTTTCATTTTAGTTTAAACATCATTT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATAAAGCTAATGGCTAAGACTGTTTTCATTTTAGTTTAAACATCATTT  100

seq1  ACTTTTGTCATGTGGGGATAGTGTAACTGGATTATAACTATTTATAAGAC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTTTGTCATGTGGGGATAGTGTAACTGGATTATAACTATTTATAAGAC  150

seq1  AGAAGCTTACATTTTGATCGTACATTTCCAAACCTGTGCAGTTCCTGACC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAGCTTACATTTTGATCGTACATTTCCAAACCTGTGCAGTTCCTGACC  200

seq1  TGACACATGACACAAGACAGTATCTGTCATCTTTATACTCTCTCTTAGTA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACACATGACACAAGACAGTATCTGTCATCTTTATACTCTCTCTTAGTA  250

seq1  GAGAACCCCATCTCAGGGTAATGGGTGCTTTTGTGTCTGACTATTTTATC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAACCCCATCTCAGGGTAATGGGTGCTTTTGTGTCTGACTATTTTATC  300

seq1  CCATCCTTAGGAAATTGAGGCTTATTTAGTTGGAATTAAAACGTGTTCTC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATCCTTAGGAAATTGAGGCTTATTTAGTTGGAATTAAAACGTGTTCTC  350

seq1  CCAAATTGGGTTATGTTCCCTGATTCTTATATATAACAGTTCATATATGC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAAATTGGGTTATGTTCCCTGATTCTTATATATAACAGTTCATATATGC  400

seq1  TTTGTGTTTACAATGGAAACATATTGTTTTGATACTGGAACCCGAAGCAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGTGTTTACAATGGAAACATATTGTTTTGATACTGGAACCCGAAGCAA  450

seq1  AGTTAATGAACTATCATAAGCAATGAACCAATGCTGCTTGAACATGACTT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTAATGAACTATCATAAGCAATGAACCAATGCTGCTTGAACATGACTT  500

seq1  TGGGCAGATAATAAGCTCTCACATCTGTTAGACACATAGACATAGTGAAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGCAGATAATAAGCTCTCACATCTGTTAGACACATAGACATAGTGAAA  550

seq1  CTTCAATGTGATGAGCTTTAGCTTTTCTGTCAACATACAAGTATCCCAGT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCAATGTGATGAGCTTTAGCTTTTCTGTCAACATACAAGTATCCCAGT  600

seq1  TGCATCCCATGCTTTCTGACACTGATTTTTGTGCATCCCTTTCTTTTTAT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCATCCCATGCTTTCTGACACTGATTTTTGTGCATCCCTTTCTTTTTAT  650

seq1  GAAGCTTAGAAACATATAATTTACACCAAAATAAAAACTTATTGAATCTC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGCTTAGAAACATATAATTTACACCAAAATAAAAACTTATTGAATCTC  700

seq1  AGTTCTTTTGTAACTTGTACTTTGCAGCTTATATTACATCATGGTCATTC  750
      ||||||||||| ||||||||||||||||||||||||||||||||||||||
seq2  AGTTCTTTTGT-ACTTGTACTTTGCAGCTTATATTACATCATGGTCATTC  749

seq1  ACATGGATTTATTCCTTATCCTCATAAAATCCTTAGCCTTGACCTGTCTT  800
      |||||||||||||||||||||||||||||||||||||| ||||||||| |
seq2  ACATGGATTTATTCCTTATCCTCATAAAATCCTTAGCCCTGACCTGTC-T  798

seq1  TGTTATGATCACCACAAGCTTAATTAGGTACAGAAACAAAACAACTTCCA  850
      |||||||||||||||||||||||||  |||||||||||||||||||| ||
seq2  TGTTATGATCACCACAAGCTTAATTTAGTACAGAAACAAAACAACTTTCA  848

seq1  GAAAAAGCTTAAGAATAAACGGCTGTAGCAACCACATGTTGTGGAATCTT  900
      | ||||||||||||||||||||||||||||||||||||||||||||||||
seq2  G-AAAAGCTTAAGAATAAACGGCTGTAGCAACCACATGTTGTGGAATCTT  897

seq1  TAAATCACTGTACTTTAATGTCAGCCACAGTTACTCATGCCTTTAATCTC  950
      |||||||||||||||| ||||||||  |||||||||||||||||| | ||
seq2  TAAATCACTGTACTTT-ATGTCAGCACCAGTTACTCATGCCTTTATTTTC  946

seq1  AGCAATCAAGAGACCAAGGCAAGAGGGTTGGCATGAGTTCAAGGCCAGTC  1000
      ||||||| |||||||||||| ||| |||| ||||||| ||||||||||||
seq2  AGCAATC-AGAGACCAAGGC-AGAAGGTT-GCATGAG-TCAAGGCCAGTC  992

seq1  TAGACTGGAAAAATAAAACCCTATCTCAATAAATGGGAAAATAACCCAAA  1050
      ||||||||||||   |||||||||||| || |||||| |||||  |||||
seq2  TAGACTGGAAAA--TAAACCCTATCTC-ATTAATGGG-AAATA--CCAAA  1036

seq1  GC  1052
      ||
seq2  GC  1038


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