BAC Information

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BAC

Clone NameB6Ng01-124P01
Chromosome13 (Build37)
Map Location 105,647,908 - 105,772,169
singlet/doubletdoublet
Overlap geneA930021C24Rik, EG238836, Rgs7bp
Upstream geneErbb2ip, LOC100040086, D130037M23Rik, Nln, Sgtb, 2410002O22Rik, LOC100040518, Trim23, Ppwd1, Cenpk, Adamts6, LOC667518, Sdccag10, 3110031B13Rik
Downstream gene4933425L06Rik, LOC100040646, LOC100040656, Rnf180, Htr1a, EG668025
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-124P01.bB6Ng01-124P01.g
ACCDH927714DH927715
length1,0721,107
definitionDH927714|Mus musculus domesticus DNA, BAC clone: B6Ng01-124P01, 5' end.DH927715|Mus musculus domesticus DNA, BAC clone: B6Ng01-124P01, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(105,771,089 - 105,772,169)(105,647,908 - 105,649,014)
sequence
gaattccattccatccaacctgtctatatacaacacgataggaggaagta
cagagggaggctgcctggtttccgttgctaacgtatttgacttatgtttt
cctttcaatacatcaaagaagaattccttggaaaccccctgcatgtaaac
tttctatacttttgagtcaggaaaatgggaactgagaagagatagtaaat
gatctgtgccaatgatttcaatttgaagatgaggaagttcagtaagctac
ctaggggaaacctcaatgaagcagttaaagatttgaagtcagatgagtat
tgatgacaacaaaatgatgtgataatttagtggtggaaattaaattttgt
gtatgcacatatgtgtacatatgcatgcaacagaactaaaaacgggagtt
tttcctgcaatgttctcaagacaggataggattttctcaatgcattagta
ttatttctttttccttcgtctttctaaagactgatctttcagggattaac
atcttcatttctatggttagtaacagaggtcagcctcatgacattcctga
tgccttatcaaagaattaagtactcagacacatggtataaaagcaggctt
cacattcacacatacacatgcagggcaatgtattcattctttgcattgtt
tgggtaggttggtgtcttagtcattgttctactgctgtgagaagatacca
tgaccaaagcaactcttataaagaaagcatatagttgtggccttgctttc
agttttacaagtttcaccattagctttcatgacaaggagcatggcagtag
acataacaggcagggtactggagaagttgaggtttacatcctgatctgta
gaggagagcgagaaagaggcactgggttctggcatggacttttaaaacct
ccaagccctcccccagttgacacacttcctccagaaggcacacctcctaa
tcctttcaaatagaaatacttccacaagacacacactcaatatatgagcg
tatgggaccattcttaccaaaccacacagctgggttagatggtcttggtc
tccagatctgctgatacacttg
gaattcttttagattcccccttgattcttcacactaggtgccagttggac
aattgactgaccagtccagaataagataccaagagcatcctgttaggagt
tttgttgttttgtgtatttgacttccttggttccacaagaacatcaaact
ttcatgttacaagaggattaagtattgataagtaaaccggaattacatat
atgaaatcagattttctggcccactgactctctgtccctgagggcattta
tactctgctagtttccattgaacactatttcccgaaaatatcctgtcact
taaagaaaaaaactgattcaatgtgaattcttttgaggatacattgtaag
gtgaatctttaagcaacattcattttgaacagtgtgacctgttgcccagc
ttagagttattcttttggctatggtacaggtagttaactacaaataacag
attcagcttaccttctagggtagaagatgtctctaggtgctgaagtttaa
ggccattgtctaatctttgaggttttgtgtacagaaataagtagcagagg
acacagacactgatgacaaaggcaagtaagacaagggcagcgattcccaa
tccaaccagagcaccaatactggggaaacagaaagaagtcatgtcatcca
aactgccacgcactcaaactggaacaaagaattcgctgttcattcttgtt
ctcattaattcataatcaaattctgtcctaccataaactatgcatgatcg
aaattttcatcttggaatcttgatacattttgtttagagtattaagatct
taaaatttgtatgctaatatcagtgtgatatctatgagataggacaaaag
gtcacgtgagtctttaagaacttcgtaaatatctcagaccaatgaatcca
gttatcataaataccactccttagaaagatcaattttgcaagccaaagat
aaacagggaaaatacttccttcctgtagagtcgggaaaacatatacagaa
atataaagcttttcttttagagaattatttgaaagacaccacttaattat
attacctgccaaggactggcttcagcttaaaagaggggtttctaagaaaa
ggttgtt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr13_105771089_105772169
seq2: B6Ng01-124P01.b_47_1118 (reverse)

seq1  CAAGTGTAATCAAGGCAGATCTGGAGAACAAGACCATCTAAAACCCAGCT  50
      ||||||| ||||  ||||||||||||| |||||||||||  |||||||||
seq2  CAAGTGT-ATCA--GCAGATCTGGAGACCAAGACCATCT--AACCCAGCT  45

seq1  GTGGTGGTTTGGGTAAGAATGGTCCCAATACGCTCATATATTTGAGTGTG  100
      || ||||||| ||||||||||||||| ||||||||||||| |||||||||
seq2  GT-GTGGTTT-GGTAAGAATGGTCCC-ATACGCTCATATA-TTGAGTGTG  91

seq1  TTGTCTTGTGGAAGTATTTCTATTTGAAAGGATTAGGAGGTGTGGCCTTC  150
       |||||||||||||||||||||||||||||||||||||||||| ||||||
seq2  -TGTCTTGTGGAAGTATTTCTATTTGAAAGGATTAGGAGGTGT-GCCTTC  139

seq1  TGGAGGAAGTGTGTCAACTGGGGGAGGGCTTGGAGGTTTTAAAAGTCCAT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGAGGAAGTGTGTCAACTGGGGGAGGGCTTGGAGGTTTTAAAAGTCCAT  189

seq1  GCCAGAA-CCAGTGCCTCTTTCTCGCTCTCCTCTACAGATCAGGATGTAA  249
      ||||||| ||||||||||||||||||||||||||||||||||||||||||
seq2  GCCAGAACCCAGTGCCTCTTTCTCGCTCTCCTCTACAGATCAGGATGTAA  239

seq1  ACCTCAACTTCTCCAGTACCCTGCCTGTTATGTCTACTGCCATGCTCCTT  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTCAACTTCTCCAGTACCCTGCCTGTTATGTCTACTGCCATGCTCCTT  289

seq1  GTCATG-AAGCTAATGGTGAAACTTGTAAAACTGAAAGCAAGGCCACAAC  348
      |||||| |||||||||||||||||||||||||||||||||||||||||||
seq2  GTCATGAAAGCTAATGGTGAAACTTGTAAAACTGAAAGCAAGGCCACAAC  339

seq1  TATATGCTTTCTTTATAAGAGTTGCTTTGGTCATGGTATCTTCTCACAGC  398
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATATGCTTTCTTTATAAGAGTTGCTTTGGTCATGGTATCTTCTCACAGC  389

seq1  AGTAGAACAATGACTAAGACACCAACCTACCCAAACAATGCAAAGAATGA  448
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTAGAACAATGACTAAGACACCAACCTACCCAAACAATGCAAAGAATGA  439

seq1  ATACATTGCCCTGCATGTGTATGTGTGAATGTGAAGCCTGCTTTTATACC  498
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATACATTGCCCTGCATGTGTATGTGTGAATGTGAAGCCTGCTTTTATACC  489

seq1  ATGTGTCTGAGTACTTAATTCTTTGATAAGGCATCAGGAATGTCATGAGG  548
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTGTCTGAGTACTTAATTCTTTGATAAGGCATCAGGAATGTCATGAGG  539

seq1  CTGACCTCTGTTACTAACCATAGAAATGAAGATGTTAATCCCTGAAAGAT  598
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGACCTCTGTTACTAACCATAGAAATGAAGATGTTAATCCCTGAAAGAT  589

seq1  CAGTCTTTAGAAAGACGAAGGAAAAAGAAATAATACTAATGCATTGAGAA  648
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTCTTTAGAAAGACGAAGGAAAAAGAAATAATACTAATGCATTGAGAA  639

seq1  AATCCTATCCTGTCTTGAGAACATTGCAGGAAAAACTCCCGTTTTTAGTT  698
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCCTATCCTGTCTTGAGAACATTGCAGGAAAAACTCCCGTTTTTAGTT  689

seq1  CTGTTGCATGCATATGTACACATATGTGCATACACAAAATTTAATTTCCA  748
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTTGCATGCATATGTACACATATGTGCATACACAAAATTTAATTTCCA  739

seq1  CCACTAAATTATCACATCATTTTGTTGTCATCAATACTCATCTGACTTCA  798
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACTAAATTATCACATCATTTTGTTGTCATCAATACTCATCTGACTTCA  789

seq1  AATCTTTAACTGCTTCATTGAGGTTTCCCCTAGGTAGCTTACTGAACTTC  848
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCTTTAACTGCTTCATTGAGGTTTCCCCTAGGTAGCTTACTGAACTTC  839

seq1  CTCATCTTCAAATTGAAATCATTGGCACAGATCATTTACTATCTCTTCTC  898
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCATCTTCAAATTGAAATCATTGGCACAGATCATTTACTATCTCTTCTC  889

seq1  AGTTCCCATTTTCCTGACTCAAAAGTATAGAAAGTTTACATGCAGGGGGT  948
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTCCCATTTTCCTGACTCAAAAGTATAGAAAGTTTACATGCAGGGGGT  939

seq1  TTCCAAGGAATTCTTCTTTGATGTATTGAAAGGAAAACATAAGTCAAATA  998
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCAAGGAATTCTTCTTTGATGTATTGAAAGGAAAACATAAGTCAAATA  989

seq1  CGTTAGCAACGGAAACCAGGCAGCCTCCCTCTGTACTTCCTCCTATCGTG  1048
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGTTAGCAACGGAAACCAGGCAGCCTCCCTCTGTACTTCCTCCTATCGTG  1039

seq1  TTGTATATAGACAGGTTGGATGGAATGGAATTC  1081
      |||||||||||||||||||||||||||||||||
seq2  TTGTATATAGACAGGTTGGATGGAATGGAATTC  1072

seq1: chr13_105647908_105649014
seq2: B6Ng01-124P01.g_70_1176

seq1  GAATTCTTTTAGATTCCCCCTTGATTCTTCACACTAGGTGCCAGTTGGAC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTTTAGATTCCCCCTTGATTCTTCACACTAGGTGCCAGTTGGAC  50

seq1  AATTGACTGACCAGTCCAGAATAAGATACCAAGAGCATCCTGTTAGGAGT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTGACTGACCAGTCCAGAATAAGATACCAAGAGCATCCTGTTAGGAGT  100

seq1  TTTGTTGTTTTGTGTATTTGACTTCCTTGGTTCCACAAGAACATCAAACT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGTTGTTTTGTGTATTTGACTTCCTTGGTTCCACAAGAACATCAAACT  150

seq1  TTCATGTTACAAGAGGATTAAGTATTGATAAGTAAACCGGAATTACATAT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCATGTTACAAGAGGATTAAGTATTGATAAGTAAACCGGAATTACATAT  200

seq1  ATGAAATCAGATTTTCTGGCCCACTGACTCTCTGTCCCTGAGGGCATTTA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGAAATCAGATTTTCTGGCCCACTGACTCTCTGTCCCTGAGGGCATTTA  250

seq1  TACTCTGCTAGTTTCCATTGAACACTATTTCCCGAAAATATCCTGTCACT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTCTGCTAGTTTCCATTGAACACTATTTCCCGAAAATATCCTGTCACT  300

seq1  TAAAGAAAAAAACTGATTCAATGTGAATTCTTTTGAGGATACATTGTAAG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAGAAAAAAACTGATTCAATGTGAATTCTTTTGAGGATACATTGTAAG  350

seq1  GTGAATCTTTAAGCAACATTCATTTTGAACAGTGTGACCTGTTGCCCAGC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGAATCTTTAAGCAACATTCATTTTGAACAGTGTGACCTGTTGCCCAGC  400

seq1  TTAGAGTTATTCTTTTGGCTATGGTACAGGTAGTTAACTACAAATAACAG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGAGTTATTCTTTTGGCTATGGTACAGGTAGTTAACTACAAATAACAG  450

seq1  ATTCAGCTTACCTTCTAGGGTAGAAGATGTCTCTAGGTGCTGAAGTTTAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCAGCTTACCTTCTAGGGTAGAAGATGTCTCTAGGTGCTGAAGTTTAA  500

seq1  GGCCATTGTCTAATCTTTGAGGTTTTGTGTACAGAAATAAGTAGCAGAGG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCCATTGTCTAATCTTTGAGGTTTTGTGTACAGAAATAAGTAGCAGAGG  550

seq1  ACACAGACACTGATGACAAAGGCAAGTAAGACAAGGGCAGCGATTCCCAA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACAGACACTGATGACAAAGGCAAGTAAGACAAGGGCAGCGATTCCCAA  600

seq1  TCCAACCAGAGCACCAATACTGGGGAAACAGAAAGAAGTCATGTCATCCA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCAACCAGAGCACCAATACTGGGGAAACAGAAAGAAGTCATGTCATCCA  650

seq1  AACTGCCACGCACTCAAACTGGAACAAAGAATTCGCTGTTCATTCTTGTT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTGCCACGCACTCAAACTGGAACAAAGAATTCGCTGTTCATTCTTGTT  700

seq1  CTCATTAATTCATAATCAAATTCTGTCCTACCATAAACTATGCATGATCG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCATTAATTCATAATCAAATTCTGTCCTACCATAAACTATGCATGATCG  750

seq1  AAATTTTCATCTTGAATTCTTGATACATTTTGTTTAGAGTATTTAAGAAT  800
      |||||||||||||| | |||||||||||||||||||||||| ||||| ||
seq2  AAATTTTCATCTTGGAATCTTGATACATTTTGTTTAGAGTA-TTAAG-AT  798

seq1  CTTTAAAATTTGTATGCTAATATCAGTGTGATATCTATGAGATAGGAC-A  849
      | |||||||||||||||||||||||||||||||||||||||||||||| |
seq2  C-TTAAAATTTGTATGCTAATATCAGTGTGATATCTATGAGATAGGACAA  847

seq1  AAGGTCACGTGAGTCTTTAAGAACTTCGTAAATATCTCAGACCAATGAAT  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGTCACGTGAGTCTTTAAGAACTTCGTAAATATCTCAGACCAATGAAT  897

seq1  CAAGTTAATCATAAATACCACACCTTAGAAAGATCAATTTTGCAAGCAAA  949
      | |||| |||||||||||||| ||||||||||||||||||||||||| ||
seq2  CCAGTT-ATCATAAATACCACTCCTTAGAAAGATCAATTTTGCAAGCCAA  946

seq1  AGATAAACA-GGAAAATACTTCCTT-CTGTAAGAGTCGGGAAACACATAT  997
      ||||||||| ||||||||||||||| |||| |||||||||||| ||||||
seq2  AGATAAACAGGGAAAATACTTCCTTCCTGT-AGAGTCGGGAAA-ACATAT  994

seq1  AACAGAAATATAAAACTTTTCTTTTAGAGATATATATGAAAGACACCACT  1047
       ||||||||||||| |||||||||||||||  ||| ||||||||||||||
seq2  -ACAGAAATATAAAGCTTTTCTTTTAGAGAATTATTTGAAAGACACCACT  1043

seq1  TATTAATAT--ACTGCCAAGGAACTGCCTCAGCTT-AGAGAGGGG-TTCT  1093
      || | ||||   ||||||||||   || ||||||| | ||||||| ||||
seq2  TAATTATATTACCTGCCAAGGACTGGCTTCAGCTTAAAAGAGGGGTTTCT  1093

seq1  AAGGAAAGGGTGTT  1107
      ||| ||||| ||||
seq2  AAGAAAAGGTTGTT  1107