BAC Information

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BAC

Clone NameB6Ng01-125C02
Chromosome13 (Build37)
Map Location 117,166,386 - 117,254,213
singlet/doubletdoublet
Overlap genenone
Upstream geneLOC100041023, LOC547402, LOC100041045, EG623174, Isl1, EG668276, Gm280
Downstream geneLOC100041169, Parp8, LOC668288, LOC623312, Emb, EG623365, LOC382807
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-125C02.bB6Ng01-125C02.g
ACCDH927854DH927855
length6691,036
definitionDH927854|Mus musculus domesticus DNA, BAC clone: B6Ng01-125C02, 5' end.DH927855|Mus musculus domesticus DNA, BAC clone: B6Ng01-125C02, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(117,166,386 - 117,167,048)(117,253,166 - 117,254,213)
sequence
gaattcactttgtagaccaggctggcctcgaactcagaaatccacctgcc
tttgcctcccgagtgctgggactaaaagtgtacaccaccactgcccggcc
tgtaaaatatattttatattcccttcctagggagatgtacatgtacctct
gactcctcatctttccaaacctcccttggtctatgtattttaacctggct
atcattttcttagtggctaatacccacttataagtgaaccgtatttgtct
ttttaggtccgggttaccctcacttcggatgttgtttttagttccatcca
ttttcctgtaaatttcatgatgatggcatttttttaacagctgagtagta
ttccattgtgtaaatgtaccacatattctttatccattcttcgattgagg
gacatctaggttgttttcagtttctggctattatgaataaaggggcagtg
aacatagtagatgagctactttttgacatatgctccagagtggataactg
ggtcttgaggtaaatttattcgcaattttctgttttcacacccattcttt
tggtttgtgtatttttattggggaaaatgaaaccactgatacaagtagat
gctgattcattgttgattcctcttattttgttattgttgttaacagtgga
tgtggtggtggtggtggtg
gaattcttaacactatatatttttgaattaatagcattggattttataat
tgtatggataatgtccaggacaataattaattttccccattggtatctaa
tttgggaaggtggagtttcatgagaaaggttgtctgtgtggccctggcta
tcctggaacttactctggagactaggctggccacaaaccaaatgatttac
ctagctctgcctcccaggttctggggactatagtatgattcactattcct
gctatctaattttaatatgttcattattattcaactgttattttaagttt
atatttgctaagtttaaatatctgaattgtactcttgttaatgacgtttt
cattgagtttgaatcatgtcacgtcagtgccacagtagacatgtttacac
atgatttatacccacacaaaatggacataaagagagaactgctgcctaca
tgattcactcacattattatttttctcagagctattggagtgcttttgaa
ggctcatgctaattacattccccaccaaaccgggtgttttacacttttct
acaacctcaataatgtttgttgttgccagacctaaggttgctaactttga
gtaaccttatgacctctgaagatcctgttttgttctgctcttaataatgg
ctacactactaaagagtgttaatatgtatgaaacttgttcagatgagtgt
gaaactaagcaacacttaaatcaagcatcattccgcttgcaatgtaggct
ttattaaactagatccatttgcttttattattaagttacagtacagtgtt
ttaccaaaatgagtcactgattttaaaaaatgactctttggaggaaggcg
ttatatcaaagtcacagaatgctatttgatgctgtttgaaataggagctc
ttgactctagctgcatatatatcaaaagatggcctagtcgcatcactgga
aagagagcccattggactgcaacttatatgcccagtacagggataccagg
ccaaaaagggggagtgggtgggcagggggagtgggg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr13_117166386_117167048
seq2: B6Ng01-125C02.b_56_718

seq1  ACTTTGTAGACCAGGCTGGCCTCGAACTCAGAAATCCACCTGCCTTTGCC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTTGTAGACCAGGCTGGCCTCGAACTCAGAAATCCACCTGCCTTTGCC  50

seq1  TCCCGAGTGCTGGGACTAAAAGTGTACACCACCACTGCCCGGCCTGTAAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCGAGTGCTGGGACTAAAAGTGTACACCACCACTGCCCGGCCTGTAAA  100

seq1  ATATATTTTATATTCCCTTCCTAGGGAGATGTACATGTACCTCTGACTCC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATATTTTATATTCCCTTCCTAGGGAGATGTACATGTACCTCTGACTCC  150

seq1  TCATCTTTCCAAACCTCCCTTGGTCTATGTATTTTAACCTGGCTATCATT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATCTTTCCAAACCTCCCTTGGTCTATGTATTTTAACCTGGCTATCATT  200

seq1  TTCTTAGTGGCTAATACCCACTTATAAGTGAACCGTATTTGTCTTTTTAG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTTAGTGGCTAATACCCACTTATAAGTGAACCGTATTTGTCTTTTTAG  250

seq1  GTCCGGGTTACCCTCACTTCGGATGTTGTTTTTAGTTCCATCCATTTTCC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCCGGGTTACCCTCACTTCGGATGTTGTTTTTAGTTCCATCCATTTTCC  300

seq1  TGTAAATTTCATGATGATGGCATTTTTTTAACAGCTGAGTAGTATTCCAT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTAAATTTCATGATGATGGCATTTTTTTAACAGCTGAGTAGTATTCCAT  350

seq1  TGTGTAAATGTACCACATATTCTTTATCCATTCTTCGATTGAGGGACATC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGTAAATGTACCACATATTCTTTATCCATTCTTCGATTGAGGGACATC  400

seq1  TAGGTTGTTTTCAGTTTCTGGCTATTATGAATAAAGGGGCAGTGAACATA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGGTTGTTTTCAGTTTCTGGCTATTATGAATAAAGGGGCAGTGAACATA  450

seq1  GTAGATGAGCTACTTTTTGACATATGCTCCAGAGTGGATAACTGGGTCTT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAGATGAGCTACTTTTTGACATATGCTCCAGAGTGGATAACTGGGTCTT  500

seq1  GAGGTAAATTTATTCGCAATTTTCTGTTTTCACACCCATTCTTTTGGTTT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGTAAATTTATTCGCAATTTTCTGTTTTCACACCCATTCTTTTGGTTT  550

seq1  GTGTATTTTTATTGGGGAAAATGAAACCACTGATACAAGTAGATGCTGAT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTATTTTTATTGGGGAAAATGAAACCACTGATACAAGTAGATGCTGAT  600

seq1  TCATTGTTGATTCCTCTTATTTTGTTATTGTTGTTAACAGTGGATGTGGT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATTGTTGATTCCTCTTATTTTGTTATTGTTGTTAACAGTGGATGTGGT  650

seq1  GGTGGTGGTGGTG  663
      |||||||||||||
seq2  GGTGGTGGTGGTG  663

seq1: chr13_117253166_117254213
seq2: B6Ng01-125C02.g_64_1099 (reverse)

seq1  CCCCACT-CCCCTGCCCACCCACTCCCCCTTTTTGGCCCTGGTATTCCCC  49
      ||||||| |||||||||||||||||||||||||||| ||||||||  |||
seq2  CCCCACTCCCCCTGCCCACCCACTCCCCCTTTTTGG-CCTGGTAT--CCC  47

seq1  TGTACTGGGGCATATAAAGTTTGCAAGTCCAATGGGCCTCTCTTTCCAGT  99
      |||||| ||||||||||   |||| ||||||||||| |||||||||||||
seq2  TGTACT-GGGCATATAA--GTTGC-AGTCCAATGGG-CTCTCTTTCCAGT  92

seq1  GATGGCCGACTAGGCCATCTTTTGATATATATGCAGCTAGAGTCAAGAGC  149
      ||||  ||||||||||||||||||||||||||||||||||||||||||||
seq2  GATG--CGACTAGGCCATCTTTTGATATATATGCAGCTAGAGTCAAGAGC  140

seq1  TCCTATTTTCAAAACAGCATCAAATAGCATTTCTGTGACTTTGATATAAC  199
      ||||||||   |||||||||||||||||| ||||||||||||||||||||
seq2  TCCTATTT--CAAACAGCATCAAATAGCA-TTCTGTGACTTTGATATAAC  187

seq1  GCCTTCCTCCAAAGAGTCATTTTTTAAAATCAGTGACTCATTTTGGTAAA  249
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTTCCTCCAAAGAGTCATTTTTTAAAATCAGTGACTCATTTTGGTAAA  237

seq1  ACACTGTACTGTAACTTAATAATAAAAGCAAATGGATCTAGTTTAATAAA  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACTGTACTGTAACTTAATAATAAAAGCAAATGGATCTAGTTTAATAAA  287

seq1  GCCTACATTGCAAGCGGAATGATGCTTGATTTAAGTGTTGCTTAGTTTCA  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTACATTGCAAGCGGAATGATGCTTGATTTAAGTGTTGCTTAGTTTCA  337

seq1  CACTCATCTGAACAAGTTTCATACATATTAACACTCTTTAGTAGTGTAGC  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTCATCTGAACAAGTTTCATACATATTAACACTCTTTAGTAGTGTAGC  387

seq1  CATTATTAAGAGCAGAACAAAACAGGATCTTCAGAGGTCATAAGGTTACT  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTATTAAGAGCAGAACAAAACAGGATCTTCAGAGGTCATAAGGTTACT  437

seq1  CAAAGTTAGCAACCTTAGGTCTGGCAACAACAAACATTATTGAGGTTGTA  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAGTTAGCAACCTTAGGTCTGGCAACAACAAACATTATTGAGGTTGTA  487

seq1  GAAAAGTGTAAAACACCCGGTTTGGTGGGGAATGTAATTAGCATGAGCCT  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAAGTGTAAAACACCCGGTTTGGTGGGGAATGTAATTAGCATGAGCCT  537

seq1  TCAAAAGCACTCCAATAGCTCTGAGAAAAATAATAATGTGAGTGAATCAT  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAAAAGCACTCCAATAGCTCTGAGAAAAATAATAATGTGAGTGAATCAT  587

seq1  GTAGGCAGCAGTTCTCTCTTTATGTCCATTTTGTGTGGGTATAAATCATG  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAGGCAGCAGTTCTCTCTTTATGTCCATTTTGTGTGGGTATAAATCATG  637

seq1  TGTAAACATGTCTACTGTGGCACTGACGTGACATGATTCAAACTCAATGA  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTAAACATGTCTACTGTGGCACTGACGTGACATGATTCAAACTCAATGA  687

seq1  AAACGTCATTAACAAGAGTACAATTCAGATATTTAAACTTAGCAAATATA  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACGTCATTAACAAGAGTACAATTCAGATATTTAAACTTAGCAAATATA  737

seq1  AACTTAAAATAACAGTTGAATAATAATGAACATATTAAAATTAGATAGCA  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTTAAAATAACAGTTGAATAATAATGAACATATTAAAATTAGATAGCA  787

seq1  GGAATAGTGAATCATACTATAGTCCCCAGAACCTGGGAGGCAGAGCTAGG  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAATAGTGAATCATACTATAGTCCCCAGAACCTGGGAGGCAGAGCTAGG  837

seq1  TAAATCATTTGGTTTGTGGCCAGCCTAGTCTCCAGAGTAAGTTCCAGGAT  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAATCATTTGGTTTGTGGCCAGCCTAGTCTCCAGAGTAAGTTCCAGGAT  887

seq1  AGCCAGGGCCACACAGACAACCTTTCTCATGAAACTCCACCTTCCCAAAT  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCAGGGCCACACAGACAACCTTTCTCATGAAACTCCACCTTCCCAAAT  937

seq1  TAGATACCAATGGGGAAAATTAATTATTGTCCTGGACATTATCCATACAA  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGATACCAATGGGGAAAATTAATTATTGTCCTGGACATTATCCATACAA  987

seq1  TTATAAAATCCAATGCTATTAATTCAAAAATATATAGTGTTAAGAATTC  1048
      |||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATAAAATCCAATGCTATTAATTCAAAAATATATAGTGTTAAGAATTC  1036