BAC Information

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BAC

Clone NameB6Ng01-125D19
Chromosome13 (Build37)
Map Location 12,984,379 - 12,985,518
singlet/doubletsinglet
Overlap genenone
Upstream geneRyr2, LOC100039678, Mtr, LOC100039826, Actn2, EG432725, Heatr1, LOC546246, Lgals8, LOC100039900, Edaradd, Ero1lb, LOC664862, EG238507, LOC100039744, EG630757, Prl2c3, LOC100039999
Downstream geneLOC100039754, Prl2c2, LOC434483, LOC674723, Prl2c5, LOC630611, LOC100039786, LOC385049, LOC630663, LOC100040108, Gpr137b, LOC664960, Nid1, Lyst, LOC100039831, Gng4, EG665000, EG665008
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-125D19.bB6Ng01-125D19.g
ACCDH927929DH927930
length1,2361,111
definitionDH927929|Mus musculus domesticus DNA, BAC clone: B6Ng01-125D19, 5' end.DH927930|Mus musculus domesticus DNA, BAC clone: B6Ng01-125D19, 3' end.
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattccacctgaaatctcacccaaaactatggacgccagaagaccatgg
acagatgtcatacagaccccgagagaacacaaatgccagcccaggcaaaa
ctctcaattaccatatatggagaaaccaaagtattccatgtcaagaccca
atttacacagtatctttccacgaatccagtccttcaaaggataataaact
gaaaactccaacacaaggggggaaacaaccccctagaaaaggcaagaaag
taatctttcaacaaacctaaaagaaaatagtcatatgagcagaattccaa
ctcaaatgacaaaaataaaaggaagcaacaattacttttccttaatgttt
cttaatatcaatggattcaatccccccaataaaaagacatagactaagag
actgattacataaacagaacccaacattttgctgcatatatgaaacccac
atcagggagagagacagatagtacctaagaggaaaaggctggaaaacaat
tttccaagcaaatggtccccaaaacaagctggagtagtcattctaatatg
gaataaaatgacttccaacctaatgttacaaaaaacaaaacaaaacaagg
aggtatacttcctactcaccaaaggtaaaatctatcaagatgaactctca
attctgaacatctatactccaaatgcaagggtatccacattcattaaaga
aactttactaaagctcaaaacacacattgcacagcacacaataattgtgg
gagacttcaccacctcactctcatcaatggacagataatggaaacagaaa
ttaaacaatgacatattgaaactaacagaagttatgatataaatggattt
aacagatatctacagaacattttatcctaaaacaaaaggatatatcttct
tctcagcacctcatggtatgttctccaatactgaccatataattgggtta
caaagcagcatcacagatttaaaatattgaaataatcccatacatcctat
cagaccctatggagtatgctgatcatcataaaacataatcatataaagcc
acaaacatgtgaagctgaacatactgtactcatgatatttggtcagaaag
aaagacattaagacgtttagagttatggaatgagacaagccatacctatt
gggaaccatgaagcgttctaggatcgaactgaagtctcaaagaacagcag
agagccatcattagccgctgtcacgacccactctct
gaattcccccaattaaatgctttcttttataagttgccttgatcatggtg
tcttgcacagcaatacaaaagtttctatgaaaggagctgaaatatatact
gaaagaaaagcatagtattcaacacttcagacaggtcgggaatccattta
tttgtttgatagttatttccaagtaaacagaattggtaataaccataaat
taattttatgaatgatttgtcacattgtcctcctcatagattctgaaaat
acttaatagaatgtacacttatgttttagacctaaatgtcgtgcataaaa
tatattctaagagaagttttttgaaaatggtcatattttaattaaatgct
aatgtatatatattgtaactattctagtttttatatttttcttattttga
atatttctgtgaataaatatttctaattcttgaattttttgttccacatc
tccagttgcattcattaaagcgtctttggaacagaagttttccaaactag
tgtcactaaagtcaaagaaaaatttccccttggcacatacatgttggctc
attaatccccttgaaagtgaaaattattgagattttagaattctgttttt
atccatatgtaaaaataaatttatgggataacaatagtgatcattataga
aaactaagtattctaattatgtgttgtacagagcagttcctagggccagt
gttatactggcttccagaacaagatgctgttttttatatatagcaccaca
gaacctcaggtgcatagtgagtgaatggttgccttgagtacaaaattaaa
actatgaaaatctcataagttttgtagtccattttatagcttcatggtca
taaaaagtctaagctattatacacattaaatcgtttaaatggttttaaaa
ctaaatatctgcaaagatgaaatgatatcttagaggccagtggtacttgc
agctgtcacttcctttttatgatcttcatctttcaccatcagttcagaaa
ttagagtatatggttattttcatcagaaatagttaataagaagaagaatg
cctcactctgatcttctaagacaccactgtacaatgatttgatatgagct
attcaaaattc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr13_12984379_12985518
seq2: B6Ng01-125D19.g_67_1177 (reverse)

seq1  GAATTTTTAATATTAGCTCAATATCAATATCATTTTGTACAGTGGTGTCT  50
      ||||||| ||   |||||| ||||||| ||||  ||||||||||||||||
seq2  GAATTTTGAA---TAGCTC-ATATCAA-ATCA--TTGTACAGTGGTGTCT  43

seq1  TAAGGAGATCAGAGTTGAGGCATTC-TCTTCTTATTTAAACTTATTTCCT  99
      | || ||||||||| |||||||||| ||||||||||  ||| ||||| ||
seq2  T-AGAAGATCAGAG-TGAGGCATTCTTCTTCTTATT--AAC-TATTT-CT  87

seq1  GATGAAAATAAACATATAACTTCTAATTTCCTGAAACTGATGGTGAAAAG  149
      ||||||||||| ||||||   |||||||| ||| ||||||||||||||  
seq2  GATGAAAATAACCATATA--CTCTAATTT-CTG-AACTGATGGTGAAA--  131

seq1  GATG-AGATCATAAAAAAGGAAGTGACAGCCTGCAAGTACCAACTTGGCC  198
      |||| ||||||| |||||||||||||||| ||||||||||| |||  | |
seq2  GATGAAGATCAT-AAAAAGGAAGTGACAG-CTGCAAGTACC-ACT--GGC  176

seq1  CTCTAAGATTATTCATTTCATCTTTGGCAGAATATTTAGTTTTTAAAAAC  248
      |||||||||   ||||||||||||| |||| ||||||||||||  |||||
seq2  CTCTAAGAT--ATCATTTCATCTTT-GCAG-ATATTTAGTTTT--AAAAC  220

seq1  CATTTTAAACGATTTAATGTGTATAATAGCTTAGACTTTTTATGACCATG  298
      || |||||||||||||||||||||||||||||||||||||||||||||||
seq2  CA-TTTAAACGATTTAATGTGTATAATAGCTTAGACTTTTTATGACCATG  269

seq1  AAGCTATAAAATGGACTACAAAACTTATGAGATTTTCATAGTTTTAATTT  348
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCTATAAAATGGACTACAAAACTTATGAGATTTTCATAGTTTTAATTT  319

seq1  TGTACTCAAGGCAACCATTCACTCACTATGCACCTGAGGTTCTGTGGTGC  398
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTACTCAAGGCAACCATTCACTCACTATGCACCTGAGGTTCTGTGGTGC  369

seq1  TATATATAAAAAACAGCATCTTGTTCTGGAAGCCAGTATAACACTGGCCC  448
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATATATAAAAAACAGCATCTTGTTCTGGAAGCCAGTATAACACTGGCCC  419

seq1  TAGGAACTGCTCTGTACAACACATAATTAGAATACTTAGTTTTCTATAAT  498
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGGAACTGCTCTGTACAACACATAATTAGAATACTTAGTTTTCTATAAT  469

seq1  GATCACTATTGTTATCCCATAAATTTATTTTTACATATGGATAAAAACAG  548
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATCACTATTGTTATCCCATAAATTTATTTTTACATATGGATAAAAACAG  519

seq1  AATTCTAAAATCTCAATAATTTTCACTTTCAAGGGGATTAATGAGCCAAC  598
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTCTAAAATCTCAATAATTTTCACTTTCAAGGGGATTAATGAGCCAAC  569

seq1  ATGTATGTGCCAAGGGGAAATTTTTCTTTGACTTTAGTGACACTAGTTTG  648
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTATGTGCCAAGGGGAAATTTTTCTTTGACTTTAGTGACACTAGTTTG  619

seq1  GAAAACTTCTGTTCCAAAGACGCTTTAATGAATGCAACTGGAGATGTGGA  698
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAACTTCTGTTCCAAAGACGCTTTAATGAATGCAACTGGAGATGTGGA  669

seq1  ACAAAAAATTCAAGAATTAGAAATATTTATTCACAGAAATATTCAAAATA  748
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAAAAATTCAAGAATTAGAAATATTTATTCACAGAAATATTCAAAATA  719

seq1  AGAAAAATATAAAAACTAGAATAGTTACAATATATATACATTAGCATTTA  798
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAAAATATAAAAACTAGAATAGTTACAATATATATACATTAGCATTTA  769

seq1  ATTAAAATATGACCATTTTCAAAAAACTTCTCTTAGAATATATTTTATGC  848
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTAAAATATGACCATTTTCAAAAAACTTCTCTTAGAATATATTTTATGC  819

seq1  ACGACATTTAGGTCTAAAACATAAGTGTACATTCTATTAAGTATTTTCAG  898
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACGACATTTAGGTCTAAAACATAAGTGTACATTCTATTAAGTATTTTCAG  869

seq1  AATCTATGAGGAGGACAATGTGACAAATCATTCATAAAATTAATTTATGG  948
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCTATGAGGAGGACAATGTGACAAATCATTCATAAAATTAATTTATGG  919

seq1  TTATTACCAATTCTGTTTACTTGGAAATAACTATCAAACAAATAAATGGA  998
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATTACCAATTCTGTTTACTTGGAAATAACTATCAAACAAATAAATGGA  969

seq1  TTCCCGACCTGTCTGAAGTGTTGAATACTATGCTTTTCTTTCAGTATATA  1048
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCCGACCTGTCTGAAGTGTTGAATACTATGCTTTTCTTTCAGTATATA  1019

seq1  TTTCAGCTCCTTTCATAGAAACTTTTGTATTGCTGTGCAAGACACCATGA  1098
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCAGCTCCTTTCATAGAAACTTTTGTATTGCTGTGCAAGACACCATGA  1069

seq1  TCAAGGCAACTTATAAAAGAAAGCATTTAATTGGGGGAATTC  1140
      ||||||||||||||||||||||||||||||||||||||||||
seq2  TCAAGGCAACTTATAAAAGAAAGCATTTAATTGGGGGAATTC  1111