BAC Information

Click to search

BAC

Clone NameB6Ng01-126G07
Chromosome13 (Build37)
Map Location 115,755,059 - 115,756,331
singlet/doubletsinglet
Overlap geneItga1
Upstream geneArl15, A430090L17Rik, Ndufs4, LOC100040958, Fst, 4930467J12Rik, Mocs2, Itga2, LOC100040975
Downstream genePelo, LOC100041023, LOC547402, LOC100041045
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-126G07.b
ACCDH928775
length1,238
definitionDH928775|Mus musculus domesticus DNA, BAC clone: B6Ng01-126G07, 5' end.
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
gaattcaacttttctctgttattttgttttctgataaattcatcataaaa
gctatcatcatggcttgtttgaaaataatatgttcttacatttctcaccc
tagaccatctcagtaaatatctaaattaacttgaaagaaaacaaattacc
accttggtgttcccaaaggattttggtatagggggtctctgaaccttatg
ctcttcattatactattttactattgtattgcatgttccttatacagcca
cacaaaagaaaatatgttgtcttttctgtttatacaccaaagaagcattt
tatctttaagacacacagagtggctaaaacaaggttcatctcaattatga
gtctattcctcgtatgtccttcattgatataggacttcagactacttttg
ccataaaactaggtttttgttttcctttctttaaaaagtaagagatagac
ttattacaattttaggtaaatgttaagttaaatggtccttagtaatcttc
ccctgtaaaaaggatgcccagggattttggatatatgtatccccaatcga
ggcacatggtttttcctttgtgaaaatgagactctgtaaaaatgagactc
aatgtatgaaagtcatttaaaaaaatctctcttctcacatgaaagcttgc
actttattatgtacgagagcatcaataactcctaacttattttgctcatt
gtctcttggtggttggagtaagcatgggcagtatccatggcgcttacctt
ccacagagctaatataagcagcattaacagcaggagtcccgcaaaggcgc
tcaggaggataacccacagcggcactcggcctgggagcccgtctttggat
atctgaatagccagctgaaaattattaaacacggttgttaacgctgataa
acacccatcagaactcctgggaacaccgagtcctggtgggctttattttt
ctaccaaacagtgtaattaatctcattactgtatacagagaaaacatttg
ggtttacgtttgagatgctttcatttactcacatgtcccataatatcaaa
tttattatgacgaaattgtagagcagtcgaaacagagttttacactaaat
gtacgctccactcagatggattctatgtcaagaacgatgagaaaatcaat
gcttttgtctaatagtcttcgctattttaaagtaggataatcggtaactt
ttcaagactagctgaatgactcactttgttttggattt
quality valuesOpen.




Alignment Information

BAC End 1BAC End 2
seq1: chr13_115755059_115756331
seq2: B6Ng01-126G07.b_45_1282

seq1  GAATTCAACTTTTCTCTGTTATTTTGTTTTCTGATAAATTCATCATAAAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAACTTTTCTCTGTTATTTTGTTTTCTGATAAATTCATCATAAAA  50

seq1  GCTATCATCATGGCTTGTTTGAAAATAATATGTTCTTACATTTCTCACCC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTATCATCATGGCTTGTTTGAAAATAATATGTTCTTACATTTCTCACCC  100

seq1  TAGACCATCTCAGTAAATATCTAAATTAACTTGAAAGAAAACAAATTACC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGACCATCTCAGTAAATATCTAAATTAACTTGAAAGAAAACAAATTACC  150

seq1  ACCTTGGTGTTCCCAAAGGATTTTGGTATAGGGGGTCTCTGAACCTTATG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTTGGTGTTCCCAAAGGATTTTGGTATAGGGGGTCTCTGAACCTTATG  200

seq1  CTCTTCATTATACTATTTTACTATTGTATTGCATGTTCCTTATACAGCCA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTTCATTATACTATTTTACTATTGTATTGCATGTTCCTTATACAGCCA  250

seq1  CACAAAAGAAAATATGTTGTCTTTTCTGTTTATACACCAAAGAAGCATTT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACAAAAGAAAATATGTTGTCTTTTCTGTTTATACACCAAAGAAGCATTT  300

seq1  TATCTTTAAGACACACAGAGTGGCTAAAACAAGGTTCATCTCAATTATGA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATCTTTAAGACACACAGAGTGGCTAAAACAAGGTTCATCTCAATTATGA  350

seq1  GTCTATTCCTCGTATGTCCTTCATTGATATAGGACTTCAGACTACTTTTG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTATTCCTCGTATGTCCTTCATTGATATAGGACTTCAGACTACTTTTG  400

seq1  CCATAAAACTAGGTTTTTGTTTTCCTTTCTTTAAAAAGTAAGAGATAGAC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATAAAACTAGGTTTTTGTTTTCCTTTCTTTAAAAAGTAAGAGATAGAC  450

seq1  TTATTACAATTTTAGGTAAATGTTAAGTTAAATGGTCCTTAGTAATCTTC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATTACAATTTTAGGTAAATGTTAAGTTAAATGGTCCTTAGTAATCTTC  500

seq1  CCCTGTAAAAAGGATGCCCAGGGATTTTGGATATATGTATCCCCAATCGA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTGTAAAAAGGATGCCCAGGGATTTTGGATATATGTATCCCCAATCGA  550

seq1  GGCACATGGTTTTTCCTTTGTGAAAATGAGACTCTGTAAAAATGAGACTC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCACATGGTTTTTCCTTTGTGAAAATGAGACTCTGTAAAAATGAGACTC  600

seq1  AATGTATGAAAGTCATTTAAAAAAATCTCTCTTCTCACATGAAAGCTTGC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGTATGAAAGTCATTTAAAAAAATCTCTCTTCTCACATGAAAGCTTGC  650

seq1  ACTTTATTATGTACGAGAGCATCAATAACTCCTAACTTATTTTGCTCATT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTTATTATGTACGAGAGCATCAATAACTCCTAACTTATTTTGCTCATT  700

seq1  GTCTCTTGGTGGTTGGAGTAAGCATGGGCAGTATCCATGGCGCTTACCTT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTCTTGGTGGTTGGAGTAAGCATGGGCAGTATCCATGGCGCTTACCTT  750

seq1  CCACAGAGCTAATATAAGCAGCATTAACAGCAGGAGTCCCGCAAAGGCGC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACAGAGCTAATATAAGCAGCATTAACAGCAGGAGTCCCGCAAAGGCGC  800

seq1  TCAGGAGGATAACCCACAGCGGCACTCGGCCTGGGAGCCCGTCTTTGGAT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGGAGGATAACCCACAGCGGCACTCGGCCTGGGAGCCCGTCTTTGGAT  850

seq1  ATCTGAATAGCCAGCTGAAAATTATTAAACACGGTTGTTAACGCTGATAA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTGAATAGCCAGCTGAAAATTATTAAACACGGTTGTTAACGCTGATAA  900

seq1  ACACCCATCAGAACTCCT-GGAACACCGAGTCCGGGTGGGCTTTATTTTT  949
      |||||||||||||||||| |||||||||||||| ||||||||||||||||
seq2  ACACCCATCAGAACTCCTGGGAACACCGAGTCCTGGTGGGCTTTATTTTT  950

seq1  CTACCAAACAGTGTAATTAATCTCATTACTGTATACAGAGAAAACATTT-  998
      ||||||||||||||||||||||||||||||||||||||||||||||||| 
seq2  CTACCAAACAGTGTAATTAATCTCATTACTGTATACAGAGAAAACATTTG  1000

seq1  GGTTTACGTTTGAGAATGCCTTTCATTTACTCACAATGTCCCATAATATC  1048
      |||||||||||||| ||| ||||||||||||||| |||||||||||||||
seq2  GGTTTACGTTTGAG-ATG-CTTTCATTTACTCAC-ATGTCCCATAATATC  1047

seq1  AAATTTATTATGACGAAAATGTAGAGCAGTTCGAAACAGAGTTTTACAAC  1098
      |||||||||||||||||| |||||||||| ||||||||||||||||||  
seq2  AAATTTATTATGACGAAATTGTAGAGCAG-TCGAAACAGAGTTTTACA--  1094

seq1  TTAAATGGTACGGCTCACTCAGATGGGATTTCTAAATGTTCCCAGGACAG  1148
       ||||| |||||   |||||||||||   ||||  ||||   || || | 
seq2  CTAAAT-GTACGCTCCACTCAGATGG--ATTCT--ATGT---CAAGA-AC  1135

seq1  GATGAGAAAATC-ATGCTTTTGTCTAAAATAAGTCCTTCGGCTTAATTTT  1197
      |||||||||||| ||||||||||||||    ||| |||| |||  |||||
seq2  GATGAGAAAATCAATGCTTTTGTCTAA---TAGT-CTTC-GCT--ATTTT  1178

seq1  CTAAAAAGTCAAGGATAAAATACGTGTACTTTTACCAAGGACTCAGCTTG  1247
          |||||  |||||||    ||   ||||||  ||| |||| ||| ||
seq2  ----AAAGT--AGGATAA---TCGGTAACTTTT--CAA-GACT-AGC-TG  1214

seq1  AATGACTTCATCTTTGTTTTGGATTT  1273
      |||||| ||| |||||||||||||||
seq2  AATGAC-TCA-CTTTGTTTTGGATTT  1238