BAC Information

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BAC

Clone NameB6Ng01-126P08
Chromosome13 (Build37)
Map Location 9,979,525 - 10,108,111
singlet/doubletdoublet
Overlap geneChrm3
Upstream geneGtpbp4, LOC667721, Larp5, EG667727, LOC100039719, Dip2c, LOC666986, Zmynd11, LOC100039604
Downstream genenone
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-126P08.bB6Ng01-126P08.g
ACCDH929198DH929199
length5891,081
definitionDH929198|Mus musculus domesticus DNA, BAC clone: B6Ng01-126P08, 5' end.DH929199|Mus musculus domesticus DNA, BAC clone: B6Ng01-126P08, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(10,107,518 - 10,108,111)(9,979,525 - 9,980,611)
sequence
catcctcagcatatcatgtaaaaaggtaagtagatatgtatatggtaggt
agatagatgaatggatgcatagctagatgacagatagatagatgacaata
gctagatgataaatagatgatagatagatagatagatagatagatagata
gatagatagatagatagatagatgacaatagctagatgataaatagatgg
tggatagatagatgatagataataggtagatgatagatagatacataata
gatacatagacaaatcagacaaatcttttgttttgttttgctttttgagt
ttttttgctttggtttgtttgtttattttgttttggttttttgagacagg
gtttctctgtgtagccctggctgtcctggaactcactatgtagaccaagc
tggcctcgaactcagaaatctgcctgcctctgcctctgcctcccaactgc
tgggattaaaggtgtgtgccaccactgcccagctcagacagacaaatcta
tagcaaatgaatagcacaatgaaaaggaactaaaaaattggcattaggat
tattggtaatattttaaatttcatcattttttcacattg
gaattctttacgtgctattctgacagtgtggttgcccgagtcttcagtag
ttgttctcaaaaggaaggtctcctgcttttggactttaattagtgcaggt
ctgcttgcttgttaatatgaacattctcttagacagcttgcatcatgtga
cttgttaaaccttctggcttccagactagagttgaaggacttatcttcaa
gaactcagtgcatgtttaaatgtcacaatgaccaggcaccacatgaaatt
caaggcttttgttatttccactgagaaaaaggagagcaattctcagaatc
cttgtttaatatcctgagaaatatgtgtgtgtgtgtgaaggctagaggtt
aatgctgtatatcttcctcaattacttctccaccttattttctgagacag
aatctctcactgaacctagagtttaccaactggctagaccgactggccag
ccagtcccttggacccccctatatggcctccttagtgcagaggttgatac
agaagagctgtctactcttagaatggtgcattggaaagcacaggaaagaa
ttccttcttcacatgtcttctttttctttttttctgagatattttcttta
tttacatttcaaatgctatcccgaaagttccctataccctcccccacccc
gctcccctacccacccacttccacttcttggccctggcgttcccctgtac
tgaggcatataaagtttgcaaaaccaagggacctctctttccactgatgg
ccggctaggccatcttctgatacatatgcagctaaagacatgagctctgg
ggggtactggttagttcatattgttgttctgcctatagggttgcagaccc
tttttagctccttggtactttcttctagcttcctccatgcgggacctgtg
ttccatcctaatattgactgtgagcatccacttctatattacatgtcttc
taatgctgccacttcaaattccatttgtatatgagggaaatattcacttg
tcgcctgaaggaagcttgtacgtaagtctcccacagaaaacctcccaatc
tatcctttgcaagtaaaatactcacatgaga
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr13_10107518_10108111
seq2: B6Ng01-126P08.b_49_642 (reverse)

seq1  CAATGTGAAAAAATGATGAAATTTAAAATATTACCAATAATCCTAATGCC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATGTGAAAAAATGATGAAATTTAAAATATTACCAATAATCCTAATGCC  50

seq1  AATTTTTTAGTTCCTTTTCATTGTGCTATTCATTTGCTATAGATTTGTCT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTTTTTAGTTCCTTTTCATTGTGCTATTCATTTGCTATAGATTTGTCT  100

seq1  GTCTGAGCTGGGCAGTGGTGGCACACACCTTTAATCCCAGCAGTTGGGAG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTGAGCTGGGCAGTGGTGGCACACACCTTTAATCCCAGCAGTTGGGAG  150

seq1  GCAGAGGCAGAGGCAGGCAGATTTCTGAGTTCGAGGCCAGCTTGGTCTAC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGAGGCAGAGGCAGGCAGATTTCTGAGTTCGAGGCCAGCTTGGTCTAC  200

seq1  ATAGTGAGTTCCAGGACAGCCAGGGCTACACAGAGAAACCCTGTCTCAAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGTGAGTTCCAGGACAGCCAGGGCTACACAGAGAAACCCTGTCTCAAA  250

seq1  AAACCAAAACAAAATAAACAAACAAACCAAAGCAAAAAAACTCAAAAAGC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACCAAAACAAAATAAACAAACAAACCAAAGCAAAAAAACTCAAAAAGC  300

seq1  AAAACAAAACAAAAGATTTGTCTGATTTGTCTATGTATCTATTATGTATC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAACAAAACAAAAGATTTGTCTGATTTGTCTATGTATCTATTATGTATC  350

seq1  TATCTATCATCTACCTATTATCTATCATCTATCTATCCACCATCTATTTA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATCTATCATCTACCTATTATCTATCATCTATCTATCCACCATCTATTTA  400

seq1  TCATCTAGCTATTGTCATCTATCTATCTATCTATCTATCTATCTATCTAT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATCTAGCTATTGTCATCTATCTATCTATCTATCTATCTATCTATCTAT  450

seq1  CTATCTATCTATCTATCTATCATCTATTTATCATCTAGCTATTGTCATCT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATCTATCTATCTATCTATCATCTATTTATCATCTAGCTATTGTCATCT  500

seq1  ATCTATCTGTCATCTAGCTATGCATCCATTCATCTATCTACCTACCATAT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTATCTGTCATCTAGCTATGCATCCATTCATCTATCTACCTACCATAT  550

seq1  ACATATCTACTTACCTTTTTACATGATATGCTGAGGATGGAATT  594
      ||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATATCTACTTACCTTTTTACATGATATGCTGAGGATGGAATT  594

seq1: chr13_9979525_9980611
seq2: B6Ng01-126P08.g_69_1149

seq1  GAATTCTTTACGTGCTATTCTGACAGTGTGGTTGCCCGAGTCTTCAGTAG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTTACGTGCTATTCTGACAGTGTGGTTGCCCGAGTCTTCAGTAG  50

seq1  TTGTTCTCAAAAGGAAGGTCTCCTGCTTTTGGACTTTAATTAGTGCAGGT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTTCTCAAAAGGAAGGTCTCCTGCTTTTGGACTTTAATTAGTGCAGGT  100

seq1  CTGCTTGCTTGTTAATATGAACATTCTCTTAGACAGCTTGCATCATGTGA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCTTGCTTGTTAATATGAACATTCTCTTAGACAGCTTGCATCATGTGA  150

seq1  CTTGTTAAACCTTCTGGCTTCCAGACTAGAGTTGAAGGACTTATCTTCAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGTTAAACCTTCTGGCTTCCAGACTAGAGTTGAAGGACTTATCTTCAA  200

seq1  GAACTCAGTGCATGTTTAAATGTCACAATGACCAGGCACCACATGAAATT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAACTCAGTGCATGTTTAAATGTCACAATGACCAGGCACCACATGAAATT  250

seq1  CAAGGCTTTTGTTATTTCCACTGAGAAAAAGGAGAGCAATTCTCAGAATC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGGCTTTTGTTATTTCCACTGAGAAAAAGGAGAGCAATTCTCAGAATC  300

seq1  CTTGTTTAATATCCTGAGAAATATGTGTGTGTGTGTGAAGGCTAGAGGTT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGTTTAATATCCTGAGAAATATGTGTGTGTGTGTGAAGGCTAGAGGTT  350

seq1  AATGCTGTATATCTTCCTCAATTACTTCTCCACCTTATTTTCTGAGACAG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGCTGTATATCTTCCTCAATTACTTCTCCACCTTATTTTCTGAGACAG  400

seq1  AATCTCTCACTGAACCTAGAGTTTACCAACTGGCTAGACCGACTGGCCAG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCTCTCACTGAACCTAGAGTTTACCAACTGGCTAGACCGACTGGCCAG  450

seq1  CCAGTCCCTTGGACCCCCCTATATGGCCTCCTTAGTGCAGAGGTTGATAC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGTCCCTTGGACCCCCCTATATGGCCTCCTTAGTGCAGAGGTTGATAC  500

seq1  AGAAGAGCTGTCTACTCTTAGAATGGTGCATTGGAAAGCACAGGAAAGAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAGAGCTGTCTACTCTTAGAATGGTGCATTGGAAAGCACAGGAAAGAA  550

seq1  TTCCTTCTTCACATGTCTTCTTTTTCTTTTTTTCTGAGATATTTTCTTTA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCTTCTTCACATGTCTTCTTTTTCTTTTTTTCTGAGATATTTTCTTTA  600

seq1  TTTACATTTCAAATGCTATCCCGAAAGTTCCCTATACCCTCCCCCACCCC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTACATTTCAAATGCTATCCCGAAAGTTCCCTATACCCTCCCCCACCCC  650

seq1  GCTCCCCTACCCACCCACTTCCACTTCTTGGCCCTGGCGTTCCCCTGTAC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTCCCCTACCCACCCACTTCCACTTCTTGGCCCTGGCGTTCCCCTGTAC  700

seq1  TGAGGCATATAAAGTTTGCAAAACCAAGGGACCTCTCTTTCCACTGATGG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGGCATATAAAGTTTGCAAAACCAAGGGACCTCTCTTTCCACTGATGG  750

seq1  CCGGCTAGGCCATCTTCTGATACATATGCAGCTAAAGACATGAGCTCTGG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCGGCTAGGCCATCTTCTGATACATATGCAGCTAAAGACATGAGCTCTGG  800

seq1  GGGGTACTGGTTAGTTCATATTGTTGTTCTGCCTATAGGGTTGCAGACCC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGGTACTGGTTAGTTCATATTGTTGTTCTGCCTATAGGGTTGCAGACCC  850

seq1  -TTTTAGCTCCTTGGGTACTTTC-TCTAGC-TCCTCCATTGCGGGACCTG  897
       |||||||||||| ||||||||| |||||| ||||||| |||||||||||
seq2  TTTTTAGCTCCTT-GGTACTTTCTTCTAGCTTCCTCCA-TGCGGGACCTG  898

seq1  TGTTCCATCCT-ATA-TGACTGTGAGCATCCACTTCTATATTTACATGTC  945
      ||||||||||| ||| |||||||||||||||||||||||| |||||||||
seq2  TGTTCCATCCTAATATTGACTGTGAGCATCCACTTCTATA-TTACATGTC  947

seq1  TTCTAATGCTGCCACTTCAAATTCCATTTGTATAAGGGATGGGATATATT  995
      |||||||||||||||||||||||||||||||||| |    |||| |||||
seq2  TTCTAATGCTGCCACTTCAAATTCCATTTGTATATG---AGGGAAATATT  994

seq1  CACTGTTCGCCTAGAAGTGAAGTTTTGTACGTAAGTTCACCACAGACAAC  1045
      ||||  |||||| |||| ||||  ||||||||||||   ||||||| |||
seq2  CACTTGTCGCCT-GAAG-GAAG-CTTGTACGTAAGTCTCCCACAGAAAAC  1041

seq1  CTTCCCAATCTATCTTTGGCAGGGAAAATACTCAACATGAGA  1087
      | |||||||||||| || ||| | ||||||||| ||||||||
seq2  C-TCCCAATCTATCCTTTGCAAGTAAAATACTC-ACATGAGA  1081