BAC Information

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BAC

Clone NameB6Ng01-127K04
Chromosome13 (Build37)
Map Location 43,505,277 - 43,647,821
singlet/doubletdoublet
Overlap geneRanbp9, LOC637627, Ccdc90a
Upstream geneHn1-ps4, Phactr1, Tbc1d7, Gfod1, Sirt5, Nol7
Downstream geneRnf182, LOC100039403, Cd83, LOC100039432, A730030A06, EG637868, EG667157
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-127K04.bB6Ng01-127K04.g
ACCDH929700DH929701
length1,096835
definitionDH929700|Mus musculus domesticus DNA, BAC clone: B6Ng01-127K04, 5' end.DH929701|Mus musculus domesticus DNA, BAC clone: B6Ng01-127K04, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(43,505,277 - 43,506,373)(43,646,991 - 43,647,821)
sequence
gaattcttgagcacatttcatatctcaaatatcacttaaatgagacattt
ccaatagtgtggtccagagacagtgtttaggctactttcaatgaagtgtc
aagctcaaaatcactcacgttttccctgcccatttcacttacattgatca
aatgtctgatttatggacgccatgcagaagcaggtataatagactatagc
tcacctattgtattagggataccccccaaataaaaataatgctagttctc
atttaagtgggggtatattttcatcaagattttaaaatgagtatttccag
ttttggaaatgtggttttaacttctagtaccatatataccagtagatgta
acacatttaagcaaaaaccattggaaaactatctctctctctccctccct
ctctccctccgtccctccctcccttcctccctccctccccctccccccct
tctgtgtgtgtgtgtgagtccatgcctgtgtaaaatctggagcctcctcc
agctcaggtaagcatttgaccactgagctgaactgttgtcctccatcaac
aattttaaagggctgaaacatcagaaatattaagaaccaacgccctaaag
tagccctcatcatcttgcagagtactgttcagatgcctagaaatttacca
atggcccacacattaacttcctttcctaacactgctcaacaggtacttct
gaagagctgcatagggatacgtattggtgctgcagactggaatgtactca
agagatgtacttaacactgaaagacaaaatctggacgccagaaaatcctc
taatgcaaatgtggacagtcactttcctggtagactatccgtttctacca
actcttatatctagtaaaaaataggaatttactctcttgattgctgcaga
ttaccactaggaacctcaactgtcatgttacacagcacaagatgtgctat
ggtgactacacttctcttccacgtcagctactgaaatgtagacagaatgc
ctttaactgaggctcctatgccgagtatatttacctagtgctggctttct
gccgaaggtagataccggggtactatcacagttactggaccactaa
gaattctgggaacttttcagagggtatataagtgctagagcctgtgtagg
tggtattggtggtttgttgctggttcaaggggttggtggttgttttttaa
gtagccgtggccaaagaagaaataaaaggaaagaaactagattcaggaat
tttcttaattcctttctcccctctatccttgtttctcttctatctggtgt
tagggggtgaaactggggggataacgggtgggaaaaagaagagcccacaa
agtagcaaaaatcagctgcaatcgtggactttggaaaaatgatcaaacac
tatgtgatagtctgttcagcttttctcatcgaatgaaacagcaggccttt
ccaccaaattgtctttttcaggctagaatgtaagagaaaagtagagatga
gaagcaggtacatgtagagttgtgttgataagcagaaatgttcctgcttt
tcttgattcggagtctgaggacagcattagagatgaacctggccactgaa
acacttgcaggtgtttctgttttgtctatctttacacacacacacacaca
cacacacacacacacacactttttaacttgcctttggacactatctcctg
tctggaaaagtgtgctcttaacaatattcttatgtcctctcctccccacc
taccctaaactgtaatttgctcagatacatctaggtccctgaaaaacatc
ccttgaccacccacctgtatccttctgaagtctggttgtttctgtgtgct
cgccaagggtttacattcaacaaagcagaaatcattgtgtcttgcactgg
taagatcacagagaccaacatgacatcatctacaa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr13_43505277_43506373
seq2: B6Ng01-127K04.b_51_1146

seq1  GAATTCTTGAGCACATTTCATATCTCAAATATCACTTAAATGAGACATTT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTGAGCACATTTCATATCTCAAATATCACTTAAATGAGACATTT  50

seq1  CCAATAGTGTGGTCCAGAGACAGTGTTTAGGCTACTTTCAATGAAGTGTC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAATAGTGTGGTCCAGAGACAGTGTTTAGGCTACTTTCAATGAAGTGTC  100

seq1  AAGCTCAAAATCACTCACGTTTTCCCTGCCCATTTCACTTACATTGATCA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCTCAAAATCACTCACGTTTTCCCTGCCCATTTCACTTACATTGATCA  150

seq1  AATGTCTGATTTATGGACGCCATGCAGAAGCAGGTATAATAGACTATAGC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGTCTGATTTATGGACGCCATGCAGAAGCAGGTATAATAGACTATAGC  200

seq1  TCACCTATTGTATTAGGGATACCCCCCAAATAAAAATAATGCTAGTTCTC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACCTATTGTATTAGGGATACCCCCCAAATAAAAATAATGCTAGTTCTC  250

seq1  ATTTAAGTGGGGGTATATTTTCATCAAGATTTTAAAATGAGTATTTCCAG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTAAGTGGGGGTATATTTTCATCAAGATTTTAAAATGAGTATTTCCAG  300

seq1  TTTTGGAAATGTGGTTTTAACTTCTAGTACCATATATACCAGTAGATGTA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTGGAAATGTGGTTTTAACTTCTAGTACCATATATACCAGTAGATGTA  350

seq1  ACACATTTAAGCAAAAACCATTGGAAAACTATCTCTCTCTCTCCCTCCCT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACATTTAAGCAAAAACCATTGGAAAACTATCTCTCTCTCTCCCTCCCT  400

seq1  CTCTCCCTCCGTCCCTCCCTCCCTTCCTCCCTCCCTCCCCCTCCCCCCCT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTCCCTCCGTCCCTCCCTCCCTTCCTCCCTCCCTCCCCCTCCCCCCCT  450

seq1  TCTGTGTGTGTGTGTGAGTCCATGCCTGTGTAAAATCTGGAGCCTCCTCC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGTGTGTGTGTGTGAGTCCATGCCTGTGTAAAATCTGGAGCCTCCTCC  500

seq1  AGCTCAGGTAAGCATTTGACCACTGAGCTGAACTGTTGTCCTCCATCAAC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTCAGGTAAGCATTTGACCACTGAGCTGAACTGTTGTCCTCCATCAAC  550

seq1  AATTTTAAAGGGCTGAAACATCAGAAATATTAAGAACCAACGCCCTAAAG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTTTAAAGGGCTGAAACATCAGAAATATTAAGAACCAACGCCCTAAAG  600

seq1  TAGCCCTCATCATCTTGCAGAGTACTGTTCAGATGCCTAGAAATTTACCA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGCCCTCATCATCTTGCAGAGTACTGTTCAGATGCCTAGAAATTTACCA  650

seq1  ATGGCCCACACATTAACTTCCTTTCCTAACACTGCTCAACAGGTACTTCT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGCCCACACATTAACTTCCTTTCCTAACACTGCTCAACAGGTACTTCT  700

seq1  GAAGAGCTGCATAGGGATACGTATTGGTGCTGCAGACTGGAATGTACTCA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGAGCTGCATAGGGATACGTATTGGTGCTGCAGACTGGAATGTACTCA  750

seq1  AGAGATGTACTTAACACTGAAAGACAAAATCTGGACGCCAGAAAATCCTC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGATGTACTTAACACTGAAAGACAAAATCTGGACGCCAGAAAATCCTC  800

seq1  TAATGCAAATGTGGACAGTCACTTTCCTGGTAGACTATCCGTTTCTACCA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATGCAAATGTGGACAGTCACTTTCCTGGTAGACTATCCGTTTCTACCA  850

seq1  ACTCTTATATCTAGTAAAAAATAGGAATTTAACTCTCTTGATTGCTGCAG  900
      |||||||||||||||||||||||||||||| |||||||||||||||||||
seq2  ACTCTTATATCTAGTAAAAAATAGGAATTT-ACTCTCTTGATTGCTGCAG  899

seq1  ATTACCACTAGGAA-CTCAACTGTCATGTTACACAGCACAAGATGTGCTA  949
      |||||||||||||| |||||||||||||||||||||||||||||||||||
seq2  ATTACCACTAGGAACCTCAACTGTCATGTTACACAGCACAAGATGTGCTA  949

seq1  TGGTGACTACACTTCTCTTCCAACGTCAGCTACTGAAATGTAAGACAGAA  999
      ||||||||||||||||||||| ||||||||||||||||||| ||||||||
seq2  TGGTGACTACACTTCTCTTCC-ACGTCAGCTACTGAAATGT-AGACAGAA  997

seq1  TGCCTTTAACTGAGGCTCCTATG-CGAGTAATATTTA-CTAGTGCTGGCT  1047
      ||||||||||||||||||||||| ||||| ||||||| ||||||||||||
seq2  TGCCTTTAACTGAGGCTCCTATGCCGAGT-ATATTTACCTAGTGCTGGCT  1046

seq1  TTCTGCCGAGGGTAAGATA-CTGGGTACTATCACAAGTTACT-GACCACT  1095
      ||||||||| ||| ||||| | |||||||||||| ||||||| |||||||
seq2  TTCTGCCGAAGGT-AGATACCGGGGTACTATCAC-AGTTACTGGACCACT  1094

seq1  AA  1097
      ||
seq2  AA  1096

seq1: chr13_43646991_43647821
seq2: B6Ng01-127K04.g_67_901 (reverse)

seq1  TTGTAGATGATGTTCATGTTGGTCTCTGTGATCTTGACCAGTGC-AGACA  49
      |||||||||||| |||||||||||||||||||||| |||||||| |||||
seq2  TTGTAGATGATG-TCATGTTGGTCTCTGTGATCTT-ACCAGTGCAAGACA  48

seq1  CAATGATTTCTGC-TTGTTGAATGGTAAACCCTAGGCGAGCACACAGAAA  98
      ||||||||||||| ||||||||| ||||||||| ||||||||||||||||
seq2  CAATGATTTCTGCTTTGTTGAAT-GTAAACCCTTGGCGAGCACACAGAAA  97

seq1  CAACCAGAC-TCAGAAGGATACAGGTGGGTGGTC-AGGGATGTTTTTCAG  146
      ||||||||| |||||||||||||||||||||||| |||||||||||||||
seq2  CAACCAGACTTCAGAAGGATACAGGTGGGTGGTCAAGGGATGTTTTTCAG  147

seq1  GGA-CTAGATGTATCTGAGC-AACTACAGTTTAGGGTAGGT-GGGAGGAG  193
      ||| |||||||||||||||| || ||||||||||||||||| ||||||||
seq2  GGACCTAGATGTATCTGAGCAAATTACAGTTTAGGGTAGGTGGGGAGGAG  197

seq1  AGGACATAAGAATATTGTTAAGAGCACACTTTTCCAGACAGGAGATAGTG  243
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGACATAAGAATATTGTTAAGAGCACACTTTTCCAGACAGGAGATAGTG  247

seq1  TCCAAAGGCAAGTTGAAAAGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTG  293
      |||||||||||||| |||||||||||||||||||||||||||||||||||
seq2  TCCAAAGGCAAGTTAAAAAGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTG  297

seq1  TGTGTAAAGATAGACAAAACAGAAACACCTGCAAGTGTTTCAGTGGCCAG  343
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGTAAAGATAGACAAAACAGAAACACCTGCAAGTGTTTCAGTGGCCAG  347

seq1  GTTCATCTCTAATGCTGTCCTCAGACTCCGAATCAAGAAAAGCAGGAACA  393
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTCATCTCTAATGCTGTCCTCAGACTCCGAATCAAGAAAAGCAGGAACA  397

seq1  TTTCTGCTTATCAACACAACTCTACATGTACCTGCTTCTCATCTCTACTT  443
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCTGCTTATCAACACAACTCTACATGTACCTGCTTCTCATCTCTACTT  447

seq1  TTCTCTTACATTCTAGCCTGAAAAAGACAATTTGGTGGAAAGGCCTGCTG  493
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTCTTACATTCTAGCCTGAAAAAGACAATTTGGTGGAAAGGCCTGCTG  497

seq1  TTTCATTCGATGAGAAAAGCTGAACAGACTATCACATAGTGTTTGATCAT  543
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCATTCGATGAGAAAAGCTGAACAGACTATCACATAGTGTTTGATCAT  547

seq1  TTTTCCAAAGTCCACGATTGCAGCTGATTTTTGCTACTTTGTGGGCTCTT  593
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTCCAAAGTCCACGATTGCAGCTGATTTTTGCTACTTTGTGGGCTCTT  597

seq1  CTTTTTCCCACCCGTTATCCCCCCAGTTTCACCCCCTAACACCAGATAGA  643
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTTTCCCACCCGTTATCCCCCCAGTTTCACCCCCTAACACCAGATAGA  647

seq1  AGAGAAACAAGGATAGAGGGGAGAAAGGAATTAAGAAAATTCCTGAATCT  693
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGAAACAAGGATAGAGGGGAGAAAGGAATTAAGAAAATTCCTGAATCT  697

seq1  AGTTTCTTTCCTTTTATTTCTTCTTTGGCCACGGCTACTTAAAAAACAAC  743
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTTCTTTCCTTTTATTTCTTCTTTGGCCACGGCTACTTAAAAAACAAC  747

seq1  CACCAACCCCTTGAACCAGCAACAAACCACCAATACCACCTACACAGGCT  793
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACCAACCCCTTGAACCAGCAACAAACCACCAATACCACCTACACAGGCT  797

seq1  CTAGCACTTATATACCCTCTGAAAAGTTCCCAGAATTC  831
      ||||||||||||||||||||||||||||||||||||||
seq2  CTAGCACTTATATACCCTCTGAAAAGTTCCCAGAATTC  835