BAC Information

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BAC

Clone NameB6Ng01-128B19
Chromosome13 (Build37)
Map Location 105,021,667 - 105,134,131
singlet/doubletdoublet
Overlap geneCenpk, Adamts6
Upstream geneMast4, EG432800, LOC432801, LOC100040045, Ppia-ps13_1282.1, Sfrs12, Erbb2ip, LOC100040086, D130037M23Rik, Nln, Sgtb, 2410002O22Rik, LOC100040518, Trim23, Ppwd1
Downstream geneLOC667518, Sdccag10, 3110031B13Rik, A930021C24Rik, EG238836, Rgs7bp, 4933425L06Rik, LOC100040646, LOC100040656, Rnf180
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-128B19.bB6Ng01-128B19.g
ACCDH930051DH930052
length1,1761,160
definitionDH930051|Mus musculus domesticus DNA, BAC clone: B6Ng01-128B19, 5' end.DH930052|Mus musculus domesticus DNA, BAC clone: B6Ng01-128B19, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(105,132,954 - 105,134,131)(105,021,667 - 105,022,833)
sequence
gaattccaggagaaaaaactatccttatctctgaaaacaaagggccacag
agaagaaatggacagacctctctaaacttcctggttttcaccttttaaaa
atatcaacaccccttttctacatcacattgctccaaaactgtttagtttg
ccacaaattatgcaagtacatttctccccctgtctgtctgtctctgtccc
tctctctgtctctctcctgtctctctctctgtctctctctctctgtctct
ctctgtctctctctgtctctctctgtctctctctctctctctctctctct
ctctgtctctgtctctctctctcttcccctgtttccctctctctgttttc
tacactgcaactatagaggccaggaatcttgtcttcctcaatccacctga
atttttgaaacaggtatcttactgacccagtagctcttcaattcagttag
gctggctttaagtcagtgtgctccaggattctgctagcaagatgcctata
gcacagggtttaaagttagtaacattgaagacctctaaaactattgtatt
atttcacatatctacaagccttttttgatgttttaaatttcaaataatta
aataacaattttaaatttcaatctcaacttccactacctaaaagccatta
atataaataaaattattttaagttttcaacagttagattattaattaagt
atatttaatgtactttataagcacataattgggtaaattggattcatgga
actacttactaaaaaaatttatattactagatcaaactttaatccatgtt
tttaagaaatatttactaaaagcttatcatgtagtagaggatgggaaaca
tgaacaaaattgatataacctatcttaagatactagaaaaattatattat
caaaggcttaattagatatagttgccattctgtcacagcaatggaatata
gttgaactgagctttgaacatttagaagaaactttgtatctctttcttat
ttgtatggcagaataaatattcttgacataattggtcctttaccctacat
cataagttacctctgctgagatgaagcaacatcttatcattaagtctctc
ttatgtggaagttctgcctttaaagaacttagctatgtgttattggggta
gggaatagtgccacccagtagcataa
gaattcaatagattctaagaaggttggaactaaaggacacaaaagttaat
aaatgccagattagaggaaatcatgaatcattttagtacctgtttgggac
agtagatgttgactgaattagtatccaaattagagaatatagctgtagaa
ataatacataattaagagttatgagtgaaacaaatatagaaattaaaatg
ttgaccttgaaattatgaacttttttttttttagtgagatagaggcactt
gatacactatgctattttggtaaattttttttctttaacatatgatataa
atcacagacacaagtaatatcctacttcagtaaagcaagaggggtgaatg
aattttttatgaatatagagagcatcctgctcttttcactaaactttatg
agtatgaacaatgaataacatattttacaaaattattttgtcaaaaatcc
ttggtgctttatgccactactatatttactaaataattcttataattctt
tttttgttgttttccactatagaaaattgcattttacaaaatatctttaa
attttacagaaaattactacaataagatatgaggacagataagacttaag
ctcctcatattttaacgtatcagacaaccattaacattgtttggtattaa
agtcaggcaaataatatttctttgaggcatatcatgttaactacttattt
gttttgttattattctatagtacttttttcatgtgtttgcttacctccca
ttatgtggcttagaattcatgcaagctagtgggtgttctaataatcactg
ttttagagagagaggggaatgcaaccaaagtttctgtaggtgctctacta
cttagctacatatacaactcttcccttttccttttgatatactcactttg
gaaccagtttgactgccatcttcatcttatgtaaaatttaaataaattct
gtaagcatgtttatatgtttttagaaagatgttgttattggtcttgttta
caaaaggagaaggaatgtctatagtttgtagtatatcactgtttttcttt
attttaatcaagtgtcagaataattatccactattgactgaaaccctcac
gatgccgatgtctccaggtatgaaccttttttatttcccacttcttaaga
aaatggtaag
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr13_105132954_105134131
seq2: B6Ng01-128B19.b_48_1223 (reverse)

seq1  TTATGCTTCTGGTGTGCACATATTCCCTACCCCA--TACACATAACTAAG  48
      ||||||| ||||   |||| ||||||||||||||   ||||||| |||||
seq2  TTATGCTACTGGGTGGCAC-TATTCCCTACCCCAATAACACATAGCTAAG  49

seq1  -TCTTTAAAAGCAGAACTTACACATAAGAGAGACTTAATGATAAGATGTT  97
       |||||||| ||||||||| |||||||||||||||||||||||||||| |
seq2  TTCTTTAAAGGCAGAACTTCCACATAAGAGAGACTTAATGATAAGATG-T  98

seq1  TGCTTCATCTCAGCAGGAGGTAACTAATGATGTAGGGTAAAGGA-CAAAT  146
      ||||||||||||||| ||||||||| |||||||||||||||||| ||| |
seq2  TGCTTCATCTCAGCA-GAGGTAACTTATGATGTAGGGTAAAGGACCAATT  147

seq1  ATGTCAAGGAATATTTATTCTGCCATACAAATAAAGAAAGAAGATACAAA  196
      ||||||| |||||||||||||||||||||||| ||||||| |||||||||
seq2  ATGTCAA-GAATATTTATTCTGCCATACAAAT-AAGAAAG-AGATACAAA  194

seq1  GTTTCTTCTAAATGTTCAAAGCTCAGTTCAACTATATTCCATTGCTGTGA  246
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTCTTCTAAATGTTCAAAGCTCAGTTCAACTATATTCCATTGCTGTGA  244

seq1  CAGAATGGCAACTATATCTAATTAAGCCTTTGATAATATAATTTTTCTAG  296
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAATGGCAACTATATCTAATTAAGCCTTTGATAATATAATTTTTCTAG  294

seq1  TATCTTAAGATAGGTTATATCAATTTTGTTCATGTTTCCCATCCTCTACT  346
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATCTTAAGATAGGTTATATCAATTTTGTTCATGTTTCCCATCCTCTACT  344

seq1  ACATGATAAGCTTTTAGTAAATATTTCTTAAAAACATGGATTAAAGTTTG  396
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATGATAAGCTTTTAGTAAATATTTCTTAAAAACATGGATTAAAGTTTG  394

seq1  ATCTAGTAATATAAATTTTTTTAGTAAGTAGTTCCATGAATCCAATTTAC  446
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTAGTAATATAAATTTTTTTAGTAAGTAGTTCCATGAATCCAATTTAC  444

seq1  CCAATTATGTGCTTATAAAGTACATTAAATATACTTAATTAATAATCTAA  496
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAATTATGTGCTTATAAAGTACATTAAATATACTTAATTAATAATCTAA  494

seq1  CTGTTGAAAACTTAAAATAATTTTATTTATATTAATGGCTTTTAGGTAGT  546
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTTGAAAACTTAAAATAATTTTATTTATATTAATGGCTTTTAGGTAGT  544

seq1  GGAAGTTGAGATTGAAATTTAAAATTGTTATTTAATTATTTGAAATTTAA  596
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAAGTTGAGATTGAAATTTAAAATTGTTATTTAATTATTTGAAATTTAA  594

seq1  AACATCAAAAAAGGCTTGTAGATATGTGAAATAATACAATAGTTTTAGAG  646
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACATCAAAAAAGGCTTGTAGATATGTGAAATAATACAATAGTTTTAGAG  644

seq1  GTCTTCAATGTTACTAACTTTAAACCCTGTGCTATAGGCATCTTGCTAGC  696
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTTCAATGTTACTAACTTTAAACCCTGTGCTATAGGCATCTTGCTAGC  694

seq1  AGAATCCTGGAGCACACTGACTTAAAGCCAGCCTAACTGAATTGAAGAGC  746
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAATCCTGGAGCACACTGACTTAAAGCCAGCCTAACTGAATTGAAGAGC  744

seq1  TACTGGGTCAGTAAGATACCTGTTTCAAAAATTCAGGTGGATTGAGGAAG  796
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTGGGTCAGTAAGATACCTGTTTCAAAAATTCAGGTGGATTGAGGAAG  794

seq1  ACAAGATTCCTGGCCTCTATAGTTGCAGTGTAGAAAACAGAGAGAGGGAA  846
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAGATTCCTGGCCTCTATAGTTGCAGTGTAGAAAACAGAGAGAGGGAA  844

seq1  ACAGGGGAAGAGAGAGAGAGACAGAGACAGAGAGAGAGAGAGAGAGAGAG  896
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGGGGAAGAGAGAGAGAGACAGAGACAGAGAGAGAGAGAGAGAGAGAG  894

seq1  AGAGAGACAGAGAGAGACAGAGAGAGACAGAGAGAGACAGAGAGAGAGAG  946
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGAGACAGAGAGAGACAGAGAGAGACAGAGAGAGACAGAGAGAGAGAG  944

seq1  ACAGAGAGAGAGACAGGAGAGAGACAGAGAGAGGGACAGAGACAGACAGA  996
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGAGAGAGAGACAGGAGAGAGACAGAGAGAGGGACAGAGACAGACAGA  994

seq1  CAGGGGGAGAAATGTACTTGCATAATTTGTGGCAAACTAAACAGTTTTGG  1046
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGGGGAGAAATGTACTTGCATAATTTGTGGCAAACTAAACAGTTTTGG  1044

seq1  AGCAATGTGATGTAGAAAAGGGGTGTTGATATTTTTAAAAGGTGAAAACC  1096
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCAATGTGATGTAGAAAAGGGGTGTTGATATTTTTAAAAGGTGAAAACC  1094

seq1  AGGAAGTTTAGAGAGGTCTGTCCATTTCTTCTCTGTGGCCCTTTGTTTTC  1146
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAAGTTTAGAGAGGTCTGTCCATTTCTTCTCTGTGGCCCTTTGTTTTC  1144

seq1  AGAGATAAGGATAGTTTTTTCTCCTGGAATTC  1178
      ||||||||||||||||||||||||||||||||
seq2  AGAGATAAGGATAGTTTTTTCTCCTGGAATTC  1176

seq1: chr13_105021667_105022833
seq2: B6Ng01-128B19.g_66_1225

seq1  GAATTCAATAGATTCTAAGAAGGTTGGAACTAAAGGACACAAAAGTTAAT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAATAGATTCTAAGAAGGTTGGAACTAAAGGACACAAAAGTTAAT  50

seq1  AAATGCCAGATTAGAGGAAATCATGAATCATTTTAGTACCTGTTTGGGAC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATGCCAGATTAGAGGAAATCATGAATCATTTTAGTACCTGTTTGGGAC  100

seq1  AGTAGATGTTGACTGAATTAGTATCCAAATTAGAGAATATAGCTGTAGAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTAGATGTTGACTGAATTAGTATCCAAATTAGAGAATATAGCTGTAGAA  150

seq1  ATAATACATAATTAAGAGTTATGAGTGAAACAAATATAGAAATTAAAATG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAATACATAATTAAGAGTTATGAGTGAAACAAATATAGAAATTAAAATG  200

seq1  TTGACCTTGAAATTATGAACTTTTTTTTTTTTAGTGAGATAGAGGCACTT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGACCTTGAAATTATGAACTTTTTTTTTTTTAGTGAGATAGAGGCACTT  250

seq1  GATACACTATGCTATTTTGGTAAATTTTTTTTCTTTAACATATGATATAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATACACTATGCTATTTTGGTAAATTTTTTTTCTTTAACATATGATATAA  300

seq1  ATCACAGACACAAGTAATATCCTACTTCAGTAAAGCAAGAGGGGTGAATG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCACAGACACAAGTAATATCCTACTTCAGTAAAGCAAGAGGGGTGAATG  350

seq1  AATTTTTTATGAATATAGAGAGCATCCTGCTCTTTTCACTAAACTTTATG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTTTTTATGAATATAGAGAGCATCCTGCTCTTTTCACTAAACTTTATG  400

seq1  AGTATGAACAATGAATAACATATTTTACAAAATTATTTTGTCAAAAATCC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTATGAACAATGAATAACATATTTTACAAAATTATTTTGTCAAAAATCC  450

seq1  TTGGTGCTTTATGCCACTACTATATTTACTAAATAATTCTTATAATTCTT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGTGCTTTATGCCACTACTATATTTACTAAATAATTCTTATAATTCTT  500

seq1  TTTTTGTTGTTTTCCACTATAGAAAATTGCATTTTACAAAATATCTTTAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTGTTGTTTTCCACTATAGAAAATTGCATTTTACAAAATATCTTTAA  550

seq1  ATTTTACAGAAAATTACTACAATAAGATATGAGGACAGATAAGACTTAAG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTACAGAAAATTACTACAATAAGATATGAGGACAGATAAGACTTAAG  600

seq1  CTCCTCATATTTTAACGTATCAGACAACCATTAACATTGTTTGGTATTAA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCTCATATTTTAACGTATCAGACAACCATTAACATTGTTTGGTATTAA  650

seq1  AGTCAGGCAAATAATATTTCTTTGAGGCATATCATGTTAACTACTTATTT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTCAGGCAAATAATATTTCTTTGAGGCATATCATGTTAACTACTTATTT  700

seq1  GTTTTGTTATTATTCTATAGTACTTTTTTCATGTGTTTGCTTACCTCCCA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTTGTTATTATTCTATAGTACTTTTTTCATGTGTTTGCTTACCTCCCA  750

seq1  TTATGTGGCTTAGAATTCATGCAAGCTAGTGGGTGTTCTAATAATCACTG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATGTGGCTTAGAATTCATGCAAGCTAGTGGGTGTTCTAATAATCACTG  800

seq1  TTTTAGAGAGAGAGGGGAATGCAACCAAAGTTTCTGTAGGTGCTCTACTA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTAGAGAGAGAGGGGAATGCAACCAAAGTTTCTGTAGGTGCTCTACTA  850

seq1  CTTAGCTACATATACAACTCTTCCCTTTTCCTTTTGATATACTCACTTTG  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTAGCTACATATACAACTCTTCCCTTTTCCTTTTGATATACTCACTTTG  900

seq1  GAACCAGTTTGACTGCCATCTTCATCTTATGTAAAAATTTAAATAAATTC  950
      |||||||||||||||||||||||||||||||| |||||||||||||||||
seq2  GAACCAGTTTGACTGCCATCTTCATCTTATGT-AAAATTTAAATAAATTC  949

seq1  TGTAAGGCATGTTTATATGTTTTTAGAAAGGATGTTG-TATTGGTCTTGT  999
      ||||| ||||||||||||||||||||||| ||||||| ||||||||||||
seq2  TGTAA-GCATGTTTATATGTTTTTAGAAA-GATGTTGTTATTGGTCTTGT  997

seq1  TTACAAAAGGGAGAAGGGAATTGTCTATAGTTTGTAAGTATATCACTTGT  1049
      |||||||| ||||||||  | |||||||||||||| |||||||||| |||
seq2  TTACAAAA-GGAGAAGG--AATGTCTATAGTTTGT-AGTATATCAC-TGT  1042

seq1  TTTTCTTTATTTTTAAATCAAGTGTCAGAATAAATTATCACTTATTGGAA  1099
      |||||||||||||  |||||||||||||||| |||||||   |||||  |
seq2  TTTTCTTTATTTT--AATCAAGTGTCAGAAT-AATTATCCACTATTG--A  1087

seq1  CTGAGACACTCACGAATGCAGATG-CT-CAGGTATGAAC--TTTTTATAT  1145
      |||| || |||||| |||| |||| || |||||||||||  ||||||| |
seq2  CTGAAACCCTCACG-ATGCCGATGTCTCCAGGTATGAACCTTTTTTATTT  1136

seq1  TCCAC-TCT--AGAAAATAGGTAAG  1167
       |||| |||  ||||||| ||||||
seq2  CCCACTTCTTAAGAAAAT-GGTAAG  1160