BAC Information

Click to search

BAC

Clone NameB6Ng01-128M08
Chromosome13 (Build37)
Map Location 89,510,851 - 89,511,992
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC667230, EG435375, Edil3
Downstream geneHapln1, EG667266, Vcan, LOC100042940, Xrcc4, Tmem167, LOC100043170
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-128M08.b
ACCDH930534
length1,129
definitionDH930534|Mus musculus domesticus DNA, BAC clone: B6Ng01-128M08, 5' end.
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
gaattcaagatcctcataattcagaccccaatcattcaaccagcaaaatg
tggcagacagaattctgaccctaaaaattcaatggtggtcaaataaacaa
attcttattctcaccaagcttacaacccactggggagacaaaaagcaatg
aataattaaatatcataatgtcagagtgtattgcatgcatgaaagaacac
aaaatagcaaagacatataaacaaagatgaaagtgatgccaacacaggga
aagcatgcacaggttgctcctaacaaaaggatttttaaaggtttatcttt
ccttggtcctaacaaaacaaggcaggaagctttgcaagtcatgttgtggt
acagaagtcctacttttgaaagccacagttcagctagacaatatctaaat
tgttccaaatttcacacaattggttcttttgtaattactgataacaatta
tcaaaagcagatgtattatagctatagaatgaatacaagttattctcaga
ggaacttcaaatgaaaggagcaatgagaatggtattcaaaaggtaatgat
ccttgaacagcatgctgattgtcgctccatactaccacagagggcattct
gggatgccacttaggcaacggaagtggggcagtttggattcccaaggcca
cactgccttggggcattcaccacagatgaaattatatgttcctacttcat
tattattcataacagcccccaacagacacttataaagctaaatatcattc
actaagctaaatatccatggccataaaatacggtccttcactcaagtgtc
actaattaccactgaactaactcaaatgtatttatgcaccattatcccac
agaggttacctcagctatgtgaagagacactggtataaaaatttagaaat
gaaacgaactccaagtaacaataatttttcctcattaaaatgtcatgaaa
aattctgagtgtgaacgctaagtctttaaactcccatcaatttattgcca
atcttttaaatatttatttataaaaacaaacacattagataaacaatatt
atttagttatgcctacagaattattagtctatgcagtttttatctaaata
atattggcatcttaaattacaagaataaa
quality valuesOpen.




Alignment Information

BAC End 1BAC End 2
seq1: chr13_89510851_89511992
seq2: B6Ng01-128M08.b_48_1176

seq1  GAATTCAAGATCCTCATAATTCAGACCCCAATCATTCAACCAGCAAAATG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAAGATCCTCATAATTCAGACCCCAATCATTCAACCAGCAAAATG  50

seq1  TGGCAGACAGAATTCTAACCATAAAAATTCAATGGTGGTCAAATAAACAA  100
      |||||||||||||||| ||| |||||||||||||||||||||||||||||
seq2  TGGCAGACAGAATTCTGACCCTAAAAATTCAATGGTGGTCAAATAAACAA  100

seq1  ATTCTTATTCTCACCAAGCTTACAACCCACTGGGGAGACAAAAAGCAATG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCTTATTCTCACCAAGCTTACAACCCACTGGGGAGACAAAAAGCAATG  150

seq1  AATAATTAAATATCATAATGTCAGAGTGTATTGCATGCATGAAAGAACAC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAATTAAATATCATAATGTCAGAGTGTATTGCATGCATGAAAGAACAC  200

seq1  AAAATAGCAAAGACATATAAACAAAGATGAAAGTGATGCCAACACAGGGA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAATAGCAAAGACATATAAACAAAGATGAAAGTGATGCCAACACAGGGA  250

seq1  AAGCATGCACAGGTTGCTCCTAACAAAAGGATTTTTAAAGGTTTATCTTT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCATGCACAGGTTGCTCCTAACAAAAGGATTTTTAAAGGTTTATCTTT  300

seq1  CCTTGGTCCTAACAAAACAAGGCAGGAAGCTTTGCAAGTCATGTTGTGGT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTGGTCCTAACAAAACAAGGCAGGAAGCTTTGCAAGTCATGTTGTGGT  350

seq1  ACAGAAGTCCTACTTTTGAAAGCCACAGTTCAGCTAGACAATATCTAAAT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGAAGTCCTACTTTTGAAAGCCACAGTTCAGCTAGACAATATCTAAAT  400

seq1  TGTTCCAAATTTCACACAATTGGTTCTTTTGTAATTACTGATAACAATTA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTCCAAATTTCACACAATTGGTTCTTTTGTAATTACTGATAACAATTA  450

seq1  TCAAAAGCAGATGTATTATAGCTATAGAATGAATACAAGTTATTCTCAGA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAAAAGCAGATGTATTATAGCTATAGAATGAATACAAGTTATTCTCAGA  500

seq1  GGAACTTCAAATGAAAGGAGCAATGAGAATGGTATTCAAAAGGTAATGAT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAACTTCAAATGAAAGGAGCAATGAGAATGGTATTCAAAAGGTAATGAT  550

seq1  CCTTGAACAGCATGCTGATTGTCGCTCCATACTACCACAGAGGGCATTCT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTGAACAGCATGCTGATTGTCGCTCCATACTACCACAGAGGGCATTCT  600

seq1  GGGATGCCACTTAGGCAACGGAAGTGGGGCAGTTTGGATTCCCAAGGCCA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGATGCCACTTAGGCAACGGAAGTGGGGCAGTTTGGATTCCCAAGGCCA  650

seq1  CACTGCCTTGGGGCATTCACCACAGATGAAATTATATGTTCCTACTTCAT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTGCCTTGGGGCATTCACCACAGATGAAATTATATGTTCCTACTTCAT  700

seq1  TATTATTCATAACAGCCCCCAACAGACACTTATAAAGCTAAATATCATTC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTATTCATAACAGCCCCCAACAGACACTTATAAAGCTAAATATCATTC  750

seq1  ACTAAGCTAAATATCCATGGCCATAAAATACGGTCCTTCACTCAAGTGTC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTAAGCTAAATATCCATGGCCATAAAATACGGTCCTTCACTCAAGTGTC  800

seq1  ACTAATTACCACTGAACTAACTCAAATGTATTTATGCACCATTATCCCAC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTAATTACCACTGAACTAACTCAAATGTATTTATGCACCATTATCCCAC  850

seq1  AGAGGTTACCTCAGGCTATGTGAAGAGACACTGGTATAAAAATTTAGAAA  900
      ||||||||||||| ||||||||||||||||||||||||||||||||||||
seq2  AGAGGTTACCTCA-GCTATGTGAAGAGACACTGGTATAAAAATTTAGAAA  899

seq1  TGAAACGAACTCCAAGTAACAAATAATTTTTCCTCATTAAAATGTCATGA  950
      |||||||||||||||||||| |||||||||||||||||||||||||||||
seq2  TGAAACGAACTCCAAGTAAC-AATAATTTTTCCTCATTAAAATGTCATGA  948

seq1  AAAATTCTGAGTGTGAAACGCTAAGTCCTTTAAAACTCCCATCAATTTAT  1000
      ||||||||||||||| |||||||||||  || ||||||||||||||||||
seq2  AAAATTCTGAGTGTG-AACGCTAAGTC--TTTAAACTCCCATCAATTTAT  995

seq1  TGCCAAATCTTTTAAATTATTTATTTATAAAAACAAACACATTAGATAAA  1050
      |||| ||||||||||| |||||||||||||||||||||||||||||||||
seq2  TGCC-AATCTTTTAAA-TATTTATTTATAAAAACAAACACATTAGATAAA  1043

seq1  ACAAATATTATATAGTTAATGGCCTACAGAAATTAATAGTCTATGCAGTT  1100
         |||||||| ||||||   |||||||| ||||| ||||||||||||| 
seq2  --CAATATTATTTAGTTA--TGCCTACAG-AATTATTAGTCTATGCAGT-  1087

seq1  CTGTTATCTAATATATA-TGGCATC-TAAATAACAAGGAATAAA  1142
       | ||||||||   ||| ||||||| ||||| |||| |||||||
seq2  -TTTTATCTAAATAATATTGGCATCTTAAATTACAA-GAATAAA  1129