BAC Information

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BAC

Clone NameB6Ng01-130A16
Chromosome2 (Build37)13 (Build37)
Map Location 80,331,381 - 80,331,94366,723,031 - 66,724,060
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneSsfa2, Ppp1r1c, Pde1a, LOC668005, Prdx6-rs1, Dnajc10, Frzb
Downstream geneNckap1, LOC624223, Dusp19, LOC672381, Nup35, LOC103324, LOC668027, LOC100040624, LOC100040655
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-130A16.bB6Ng01-130A16.g
ACCDH931457DH931458
length1,0211,089
definitionDH931457|Mus musculus domesticus DNA, BAC clone: B6Ng01-130A16, 5' end.DH931458|Mus musculus domesticus DNA, BAC clone: B6Ng01-130A16, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(80,331,381 - 80,331,943)(66,723,031 - 66,724,060)
sequence
gaattcctgatctttccaagacttttatcatgaatgggtgttggattttg
tcaaatgctttctcagcatctaatgagttgatcatgtggtttttgtcttt
gagtttctttatatagtggattatgttgatggattgccgtatattaaacc
atccctgcatccctgaaatgaaacctacttggtcaggctggatgattgtt
ttgatgtgttcttggattcggttagcgagaattttattgaggatttttgc
atcgatattcataagggaaattgttctgaagttctctatctttgttaggt
ctttctgtggtttaggtatcagagtaattttggctttatagaatgaattg
ggcagagtaccttctgcttctattttgtggaatagtttgggaagaactgg
aattagatcttctttgaagatctgatagaactctgcactaaacccatctg
gtcctgggatttttttggttgggagactattaatgactgcttctatttct
ttaggggatagaagactgtttagaccattaacctgatcctgatttaactt
tagtacctggtatctgtctagaaatatgtccatttcatccaggttttcca
gttttcttgaatatagtcttttgtagaaggatctgatggtgttttgtatt
tcttcaggatctgttgttatgtctccattttcatttctgattttgttaat
taggatgctgtccctgtgccctctagtgagtctgactaagggtttattga
tcttgttgattttcacaaggaaccagctccgatttggttgattctttgaa
tagttcttcttgtttccacttggttgatttctctcctgaatttgattatt
tcctgccgtctactcctcctgggtgaatttgcttccttttgttctagagc
ttttagtgtgttctcaagctgcttgtgtgtgctctctccagtttcttttg
gagcactcagaactatgagttttcatcttagaaatgctttcattgtgtcc
cttaagtggggtatgatgtgg
gaattctctgatgaattataagatcatatttgtgagtgaagcatttgtca
cattcactacattgataagggttttcccctgtatgaattctctgatgaac
attaagattatatttttgggtaaagcatttctcacattcactacatttgt
aaggtttttctcctgtataaactctgatgaatagttttgggtaaagcttt
ttgtcacattcactacatttgtaaggtttctttcctgtatgaattatttg
atgactactaacattacatttttgggtaaagcatttgttacattcactac
atttgtaaggcttctttcctgtatgaattatctgatgacttctaggactg
tgtttgtcagtacagcatttgtcacactcactacatttataaggtttctc
tccagtatgaattctctgatgaatactaagactgtatttgtgcaaaaagc
atttgtcacattcactatatatgtaaggtttctctcctgtatggattctc
tgatgtctaagcttgcatttcttggtgaaacatctggcacgttcactaca
tctgtaaggtttctttccactattggtttgtttcagcctgagtatttgct
tagagttaaaaaccttatcaagcactataccattgtgttctttctttcct
atgtggattccttgatgtagaccagtgatagaacacaaatttaaacagtt
tatacagtttttatgtttgcaaggtcctctggtgtttccattttcatgtc
tgtttatgtttgatgactcaacacgtgtattcctgaagttagcttggtaa
aatacactttgggtgtattcataaatgatttgccatgctttgacctttgt
aagacttctctggatattcacatgctgggatgtgctggaacttttagtca
ttatgcattcatttgtcttaaagagctttactggatatgaatatctttaa
atcttctcatttaatgttcatataaaattcaattgttttatcatatttaa
aagaataagatttgttattcttaaataagtggagaacaatgtccacttga
aaaaacatctccctggttaagttgggtaaactctttaaa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr2_80331381_80331943
seq2: B6Ng01-130A16.b_45_607 (reverse)

seq1  ATACCAGGTACCAAAGTTAAATCAGGATCAGGTTAATGATCTAAACAGTC  50
      ||||||||||| |||||||||||||||||||||||||| |||||||||||
seq2  ATACCAGGTACTAAAGTTAAATCAGGATCAGGTTAATGGTCTAAACAGTC  50

seq1  CTATATCCCCTAAAGAAATAGAAGCAGCCATTAATAGTCTCCCAACCAAA  100
       | |||||||||||||||||||||||| ||||||||||||||||||||||
seq2  TTCTATCCCCTAAAGAAATAGAAGCAGTCATTAATAGTCTCCCAACCAAA  100

seq1  AAAAGCCCAGGACCAGATGGGTTTAGTGCAGAGTTCTATCAGACCTTCAA  150
      |||| |||||||||||||||||||||||||||||||||||||| ||||||
seq2  AAAATCCCAGGACCAGATGGGTTTAGTGCAGAGTTCTATCAGATCTTCAA  150

seq1  AGAAGATCTAATTCCAGTTCTTCACAAACAATTCCACAAAATAGAAGCAG  200
      ||||||||||||||||||||||| ||||| ||||||||||||||||||||
seq2  AGAAGATCTAATTCCAGTTCTTCCCAAACTATTCCACAAAATAGAAGCAG  200

seq1  AAGGTACTCTACCCAATTCATTCTATGAAGCCACAATTACTCTGATACCT  250
      |||||||||| ||||||||||||||| |||||| ||||||||||||||||
seq2  AAGGTACTCTGCCCAATTCATTCTATAAAGCCAAAATTACTCTGATACCT  250

seq1  AAACCACAGAAAGACCCAACAAAGATAGAGAACTTCAGACCAATTTCCCT  300
      |||||||||||||||| |||||||||||||||||||||| ||||||||||
seq2  AAACCACAGAAAGACCTAACAAAGATAGAGAACTTCAGAACAATTTCCCT  300

seq1  TATGAATATCGATGATAAAATACTCAATAAAATTCTCGCTAACCAAATCC  350
      ||||||||||||||  ||||| |||||||||||||||||||||| |||||
seq2  TATGAATATCGATGCAAAAATCCTCAATAAAATTCTCGCTAACCGAATCC  350

seq1  AAGAACACATCAAAACCATCATCCATCCTGACCAAGTAGGTTTCATTCCA  400
      |||||||||||||||| |||||||| ||||||||||||||||||||| ||
seq2  AAGAACACATCAAAACAATCATCCAGCCTGACCAAGTAGGTTTCATTTCA  400

seq1  GGGATGCAGGGATGGTTTAATATATGGAAATTCATCAACGTAATCCACTA  450
      |||||||||||||||||||||||| || ||| ||||||| ||||||||||
seq2  GGGATGCAGGGATGGTTTAATATACGGCAATCCATCAACATAATCCACTA  450

seq1  TATAAACAAACTCAAAGACAAAAACCACATGATCATCTCGTTAGATGCGG  500
      |||||| |||||||||||||||||||||||||||| ||| |||||||| |
seq2  TATAAAGAAACTCAAAGACAAAAACCACATGATCAACTCATTAGATGCTG  500

seq1  AGAAAGCATTTGACAAAATCTAACACCCATTCATGATAAAAGCCTTGGAA  550
      |||||||||||||||||||| ||||||||||||||||||||| |||||||
seq2  AGAAAGCATTTGACAAAATCCAACACCCATTCATGATAAAAGTCTTGGAA  550

seq1  AGATCAGGAATTC  563
      |||||||||||||
seq2  AGATCAGGAATTC  563

seq1: chr13_66723031_66724060
seq2: B6Ng01-130A16.g_135_1155

seq1  GGGTTTTCCCCTGTATGAATTCTCTGATGAACATTAAGATTATATTTTTG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGTTTTCCCCTGTATGAATTCTCTGATGAACATTAAGATTATATTTTTG  50

seq1  GGTAAAGCATTTGTCACATTCACTACATTTGTAAGGTTTTTCTCCTGTAT  100
      |||||||||||| |||||||||||||||||||||||||||||||||||||
seq2  GGTAAAGCATTTCTCACATTCACTACATTTGTAAGGTTTTTCTCCTGTAT  100

seq1  AAACTCTGATGAATACTTTTGGGTAAAGCTTTTTTTCACATTCACTACAT  150
      ||||||||||||||| |||||||||||||||||| |||||||||||||||
seq2  AAACTCTGATGAATAGTTTTGGGTAAAGCTTTTTGTCACATTCACTACAT  150

seq1  TTGTAAGGTTTCTTTCCTGTATGAATTATTTGATGACTACTAACATTACA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTAAGGTTTCTTTCCTGTATGAATTATTTGATGACTACTAACATTACA  200

seq1  TTTTTGGGTAAAGCATTTGTTACATTCACTACATTTGTAAGGCTTCTTTC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTGGGTAAAGCATTTGTTACATTCACTACATTTGTAAGGCTTCTTTC  250

seq1  CTGTATGAATTATCTGATGACTTCTAGGACTGTGTTTGTCAGTACAGCAT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTATGAATTATCTGATGACTTCTAGGACTGTGTTTGTCAGTACAGCAT  300

seq1  TTGTCACACTCACTACATTTATAAGGTTTCTCTCCAGTATGAATTCTCTG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTCACACTCACTACATTTATAAGGTTTCTCTCCAGTATGAATTCTCTG  350

seq1  ATGAATACTAAGACTGTATTTGTGCAAAAAGCATTTGTCACATTCACTAT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGAATACTAAGACTGTATTTGTGCAAAAAGCATTTGTCACATTCACTAT  400

seq1  ATATGTAAGGTTTCTCTCCTGTATGGATTCTCTGATGTCTAAGCTTGCAT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATGTAAGGTTTCTCTCCTGTATGGATTCTCTGATGTCTAAGCTTGCAT  450

seq1  TTCTTGGTGAAACATCTGGCACGTTCACTACATCTGTAAGGTTTCTTTCC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTTGGTGAAACATCTGGCACGTTCACTACATCTGTAAGGTTTCTTTCC  500

seq1  ACTATTGGTTTGTTTCAGCCTGAGTATTTGCTTAGAGTTAAAAACCTTAT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTATTGGTTTGTTTCAGCCTGAGTATTTGCTTAGAGTTAAAAACCTTAT  550

seq1  CAAGCACTATACCATTGTGTTCTTTCTTTCCTATGTGGATTCCTTGATGT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGCACTATACCATTGTGTTCTTTCTTTCCTATGTGGATTCCTTGATGT  600

seq1  AGACCAGTGATAGAACACAAATTTAAACAGTTTATACAGTTTTTATGTTT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACCAGTGATAGAACACAAATTTAAACAGTTTATACAGTTTTTATGTTT  650

seq1  GCAAGGTCCTCTGGTGTTTCCATTTTCATGTCTGTTTATGTTTGATGACT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAAGGTCCTCTGGTGTTTCCATTTTCATGTCTGTTTATGTTTGATGACT  700

seq1  CAACACGTGTATTCCTGAAGTTAGCTTGGTAAAATACACTTTGGGTGTAT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAACACGTGTATTCCTGAAGTTAGCTTGGTAAAATACACTTTGGGTGTAT  750

seq1  TCATAAATGATTTTGCCATGCTTTGACCTTTGTAAGACTTCTCCTGGATA  800
      |||||||||| ||||||||||||||||||||||||||||||| |||||||
seq2  TCATAAATGA-TTTGCCATGCTTTGACCTTTGTAAGACTTCT-CTGGATA  798

seq1  TTCACATGCTGGGATGTGCTGGAACTTTTAGTCATTATGCATTCATTTGT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCACATGCTGGGATGTGCTGGAACTTTTAGTCATTATGCATTCATTTGT  848

seq1  CTTTAAAGAGGCTTTACTGGATATGAATATCTTTTAAATCATCTTCATGT  900
      | ||||||| ||||||||||||||||||||| |||||||| || |||| |
seq2  C-TTAAAGA-GCTTTACTGGATATGAATATC-TTTAAATCTTC-TCAT-T  893

seq1  TTATGTCCATATGAAAATTCAAATATGTATTTATCATATTTAAAAGAAT-  949
      | |||| ||||| ||||||||| | |   |||||||||||||||||||| 
seq2  TAATGTTCATAT-AAAATTCAATTGT---TTTATCATATTTAAAAGAATA  939

seq1  AGATATGTTATTCTTATATAAGT-GAGGACAATGTCCACTATGAATAACA  998
      |||| ||||||||||| |||||| ||| ||||||||||||   || ||||
seq2  AGATTTGTTATTCTTAAATAAGTGGAGAACAATGTCCACTTGAAAAAACA  989

seq1  TCT-CCTGGTCTAGTTGTGGTAAACTCTTTAAA  1030
      ||| ||||||  ||||| |||||||||||||||
seq2  TCTCCCTGGTTAAGTTG-GGTAAACTCTTTAAA  1021