BAC Information

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BAC

Clone NameB6Ng01-130G05
Chromosome13 (Build37)
Map Location 88,604,843 - 88,686,398
singlet/doubletdoublet
Overlap geneLOC667230, EG435375
Upstream geneLOC675707
Downstream geneEdil3, Hapln1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-130G05.bB6Ng01-130G05.g
ACCDH931715DH931716
length1,1551,023
definitionDH931715|Mus musculus domesticus DNA, BAC clone: B6Ng01-130G05, 5' end.DH931716|Mus musculus domesticus DNA, BAC clone: B6Ng01-130G05, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(88,685,222 - 88,686,398)(88,604,843 - 88,605,875)
sequence
gaattctccttacccaactatgtaatatacagcagctttggaaacttcat
gagataaacatcatgggagaagtacagtgtggccaatactaaaacgtatg
ttattatcactgatctcgattttaatgtgtatgtgatactgagtttcaga
gtggagataaggctggttgccccttgatcataatccctgaaagaagcttt
gattggtacttgcacagcttctaaacttcaccactgcaaagagcctggct
tctattttgtaactgtcctgtattgtaaaatactgtattgtgaaacaaac
aacaaaaaaaaatcattcattctaagatcatgagtttcattatgacattt
ttatgcatatttgtcatatattttgtttatcttctccaattattaccttc
ctatttatggcatgcttctttgtttccccagtggtgcctctttaattttc
aagttatatggtactgtcatcagtacatacacacattggaaaataatcct
acattctattgctattttgaaagaatattccattaatgctctatgattga
attgagaaaaaagcaggagaaagaacagatgcatttttatataataattt
tatgaactgtatatataaagagtgatttgaggaagaaagaactagtctct
gttggtaagttttttagtgtccagagaagggacaataagatttgataaac
actgaaattgttgtttagatgtgagtttttcctccttatttgtatatttt
cttcttctttttataatgcatagttttttataataaaacttgttcactca
taaaataatcatttttttaaaaggctgttcatgataagtggctgtattaa
aaatactacttacaaaacaatgtttgaaaatactgatttatttctcaata
aaacttgaaatctcatgtttaatcagtgttttccacaacctcatccacac
atctaaaatatatactatgcaaacgttaggtagagtttaagggtccctgt
ccatacacctaaaattttaatatctagcttaatattggttttattatttt
aagattatatagaatagttttataatgtgaaaatatagagggacagtttt
ttgttggttgttttgtgtccaaacctgaaatatgaacacttggtacaatg
tcaaa
gaattctcagtgcctagcagggatgaacttaaagactcactaaaaacaca
tgataaaactagtcatactaatagatgtttaattttcaacatttcatttc
tgtaacattcatttttaacctgattcctagatcttacatttaaaatgtat
ttgtctgtgtatctaaaatgtggttgctttacgttctagggatgccatga
ggaagaagttatctccacctacagtgataatagatctgtaacgagaaatg
cagttctttcttctcatgacaattactactttcttctaagcaaatgaatg
ttttttataagttaagaaactagagtttgtatagccaaaaatttggtgat
ttttcatttatggaatgaaattttcatattgcatccaatgaggcatagaa
aatatttatcaatgatgagagtacatttttaatactgggcgcactatgaa
cttgagaaggaaacttgattcagactgaaaaggaacagaactttgatcag
agggctcatgaattaatttcatttaacactatctaatctacttttgaatc
tgtctagaccttaaagaattttaactataaataatatcatttaggtcatc
tatccgatttttttaaacaaattaaattttctttttcgactatcaggtaa
tcctctaggacatatttcaaagagtaaattctggtaattatgtctgtcta
tcattggtttgagaccattctataaggtatcatgcaaggtatgggctgtg
ttgtttgcttgtttgtttgtttgtttgtttttacactaaggccccaatgg
attaaaaagaattcttctacctttacttactgatttttcggagtttcatg
tgcactttatcatttttactctttctttcccttattaaactactgcaatg
ggaccctctcaaattcatgttctgcttttcactttggggttcgaatctgc
atgacttgcatttctccttacttactttcatacatggaatatgtagtggt
tcatggattgtgaagatggtaat
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr13_88685222_88686398
seq2: B6Ng01-130G05.b_47_1201 (reverse)

seq1  TTTGACTATTGTACCAATGTGTTCATAATTCATGGTTTTTGAGACACAAA  50
      |||||| |||||||||| ||||||||| |||| |||||    ||||||||
seq2  TTTGAC-ATTGTACCAA-GTGTTCATATTTCA-GGTTT---GGACACAAA  44

seq1  AACAAACAAACAAAAAAACTTGTCCCCTCTATTATTTTTCACATTATTAA  100
      |   ||| |||||||||   ||| ||||||||   ||||||||||| |||
seq2  A--CAACCAACAAAAAA--CTGT-CCCTCTAT--ATTTTCACATTA-TAA  86

seq1  AACTATTCTATATAATTCTTTAAAATAATAAAATCAATATATAAGCTAGA  150
      ||||||||||||||||   |||||||||||||| |||||| |||||||||
seq2  AACTATTCTATATAAT--CTTAAAATAATAAAACCAATAT-TAAGCTAGA  133

seq1  TATTAAAATTTTA-GTGTATGGACAGTGAACCCTTAAACTCTACCTAACG  199
      ||||||||||||| |||||||||||| | |||||||||||||||||||||
seq2  TATTAAAATTTTAGGTGTATGGACAG-GGACCCTTAAACTCTACCTAACG  182

seq1  TTTGCATAGTATATATTTTTAGATGTGTGGATGAGGTTGTTGGAAAACAC  249
      ||||||||||||||| ||||||||||||||||||||||| ||||||||||
seq2  TTTGCATAGTATATA-TTTTAGATGTGTGGATGAGGTTG-TGGAAAACAC  230

seq1  TGATTAAACATGAGATTTCAAGTTTTTATTTGAGAAATAAATCAGTATTT  299
      ||||||||||||||||||||||||||   |||||||||||||||||| ||
seq2  TGATTAAACATGAGATTTCAAGTTTT--ATTGAGAAATAAATCAGTA-TT  277

seq1  TTCAAACATTGTTTTGTAAGTAGTATTTTTAATACAGCCACTTATCATGA  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAAACATTGTTTTGTAAGTAGTATTTTTAATACAGCCACTTATCATGA  327

seq1  ACAGCCTTTTAAAAAAATGATTATTTTATGAGTGAACAAGTTTTATTATA  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGCCTTTTAAAAAAATGATTATTTTATGAGTGAACAAGTTTTATTATA  377

seq1  AAAAACTATGCATTATAAAAAGAAGAAGAAAATATACAAATAAGGAGGAA  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAACTATGCATTATAAAAAGAAGAAGAAAATATACAAATAAGGAGGAA  427

seq1  AAACTCACATCTAAACAACAATTTCAGTGTTTATCAAATCTTATTGTCCC  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACTCACATCTAAACAACAATTTCAGTGTTTATCAAATCTTATTGTCCC  477

seq1  TTCTCTGGACACTAAAAAACTTACCAACAGAGACTAGTTCTTTCTTCCTC  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTCTGGACACTAAAAAACTTACCAACAGAGACTAGTTCTTTCTTCCTC  527

seq1  AAATCACTCTTTATATATACAGTTCATAAAATTATTATATAAAAATGCAT  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATCACTCTTTATATATACAGTTCATAAAATTATTATATAAAAATGCAT  577

seq1  CTGTTCTTTCTCCTGCTTTTTTCTCAATTCAATCATAGAGCATTAATGGA  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTTCTTTCTCCTGCTTTTTTCTCAATTCAATCATAGAGCATTAATGGA  627

seq1  ATATTCTTTCAAAATAGCAATAGAATGTAGGATTATTTTCCAATGTGTGT  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATTCTTTCAAAATAGCAATAGAATGTAGGATTATTTTCCAATGTGTGT  677

seq1  ATGTACTGATGACAGTACCATATAACTTGAAAATTAAAGAGGCACCACTG  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTACTGATGACAGTACCATATAACTTGAAAATTAAAGAGGCACCACTG  727

seq1  GGGAAACAAAGAAGCATGCCATAAATAGGAAGGTAATAATTGGAGAAGAT  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGAAACAAAGAAGCATGCCATAAATAGGAAGGTAATAATTGGAGAAGAT  777

seq1  AAACAAAATATATGACAAATATGCATAAAAATGTCATAATGAAACTCATG  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACAAAATATATGACAAATATGCATAAAAATGTCATAATGAAACTCATG  827

seq1  ATCTTAGAATGAATGATTTTTTTTTGTTGTTTGTTTCACAATACAGTATT  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTTAGAATGAATGATTTTTTTTTGTTGTTTGTTTCACAATACAGTATT  877

seq1  TTACAATACAGGACAGTTACAAAATAGAAGCCAGGCTCTTTGCAGTGGTG  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACAATACAGGACAGTTACAAAATAGAAGCCAGGCTCTTTGCAGTGGTG  927

seq1  AAGTTTAGAAGCTGTGCAAGTACCAATCAAAGCTTCTTTCAGGGATTATG  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTTTAGAAGCTGTGCAAGTACCAATCAAAGCTTCTTTCAGGGATTATG  977

seq1  ATCAAGGGGCAACCAGCCTTATCTCCACTCTGAAACTCAGTATCACATAC  1049
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCAAGGGGCAACCAGCCTTATCTCCACTCTGAAACTCAGTATCACATAC  1027

seq1  ACATTAAAATCGAGATCAGTGATAATAACATACGTTTTAGTATTGGCCAC  1099
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATTAAAATCGAGATCAGTGATAATAACATACGTTTTAGTATTGGCCAC  1077

seq1  ACTGTACTTCTCCCATGATGTTTATCTCATGAAGTTTCCAAAGCTGCTGT  1149
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGTACTTCTCCCATGATGTTTATCTCATGAAGTTTCCAAAGCTGCTGT  1127

seq1  ATATTACATAGTTGGGTAAGGAGAATTC  1177
      ||||||||||||||||||||||||||||
seq2  ATATTACATAGTTGGGTAAGGAGAATTC  1155

seq1: chr13_88604843_88605875
seq2: B6Ng01-130G05.g_68_1090

seq1  GAATTCTCAGTGCCTAGCAGGGATGAACTTAAAGACTCACTAAAAACACA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTCAGTGCCTAGCAGGGATGAACTTAAAGACTCACTAAAAACACA  50

seq1  TGATAAAACTAGTCATACTAATAGATGTTTAATTTTCAACATTTCATTTC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATAAAACTAGTCATACTAATAGATGTTTAATTTTCAACATTTCATTTC  100

seq1  TGTAACATTCATTTTTAACCTGATTCCTAGATCTTACATTTAAAATGTAT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTAACATTCATTTTTAACCTGATTCCTAGATCTTACATTTAAAATGTAT  150

seq1  TTGTCTGTGTATCTAAAATGTGGTTGCTTTACGTTCTAGGGATGCCATGA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTCTGTGTATCTAAAATGTGGTTGCTTTACGTTCTAGGGATGCCATGA  200

seq1  GGAAGAAGTTATCTCCACCTACAGTGATAATAGATCTGTAACGAGAAATG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAAGAAGTTATCTCCACCTACAGTGATAATAGATCTGTAACGAGAAATG  250

seq1  CAGTTCTTTCTTCTCATGACAATTACTACTTTCTTCTAAGCAAATGAATG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTTCTTTCTTCTCATGACAATTACTACTTTCTTCTAAGCAAATGAATG  300

seq1  TTTTTTATAAGTTAAGAAACTAGAGTTTGTATAGCCAAAAATTTGGTGAT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTTATAAGTTAAGAAACTAGAGTTTGTATAGCCAAAAATTTGGTGAT  350

seq1  TTTTCATTTATGGAATGAAATTTTCATATTGCATCCAATGAGGCATAGAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTCATTTATGGAATGAAATTTTCATATTGCATCCAATGAGGCATAGAA  400

seq1  AATATTTATCAATGATGAGAGTACATTTTTAATACTGGGCGCACTATGAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATATTTATCAATGATGAGAGTACATTTTTAATACTGGGCGCACTATGAA  450

seq1  CTTGAGAAGGAAACTTGATTCAGACTGAAAAGGAACAGAACTTTGATCAG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGAGAAGGAAACTTGATTCAGACTGAAAAGGAACAGAACTTTGATCAG  500

seq1  AGGGCTCATGAATTAATTTCATTTAACACTATCTAATCTACTTTTGAATC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGCTCATGAATTAATTTCATTTAACACTATCTAATCTACTTTTGAATC  550

seq1  TGTCTAGACCTTAAAGAATTTTAACTATAAATAATATCATTTAGGTCATC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCTAGACCTTAAAGAATTTTAACTATAAATAATATCATTTAGGTCATC  600

seq1  TATCCGATTTTTTTAAACAAATTAAATTTTCTTTTTCGACTATCAGGTAA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATCCGATTTTTTTAAACAAATTAAATTTTCTTTTTCGACTATCAGGTAA  650

seq1  TCCTCTAGGACATATTTCAAAGAGTAAATTCTGGTAATTATGTCTGTCTA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTCTAGGACATATTTCAAAGAGTAAATTCTGGTAATTATGTCTGTCTA  700

seq1  TCATTGGTTTTGAGACCATTCTATAAGGTATCATGCAAGGTATGGGCTGT  750
      ||||||| ||||||||||||||||||||||||||||||||||||||||||
seq2  TCATTGG-TTTGAGACCATTCTATAAGGTATCATGCAAGGTATGGGCTGT  749

seq1  GTTTGTTTGCTTGTTTGTTTGTTTGTTTGTTTTTACACTAAGGCCCCAAT  800
      | ||||||||||||||||||||||||||||||||||||||||||||||||
seq2  G-TTGTTTGCTTGTTTGTTTGTTTGTTTGTTTTTACACTAAGGCCCCAAT  798

seq1  GGATTTAAAAAGAATTCTTCTACCTTTACTTACTGATTTTTCGGAGTTTC  850
      ||| ||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGA-TTAAAAAGAATTCTTCTACCTTTACTTACTGATTTTTCGGAGTTTC  847

seq1  ATGTGCACTTTATCATTTTTACTCTTTCTTTCCCTTATTAAACTACTGCA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTGCACTTTATCATTTTTACTCTTTCTTTCCCTTATTAAACTACTGCA  897

seq1  ATGTGACCCTCTCAAATTCATGTTCTGCTTTTTCACTTTGTGCTTCGAAT  950
      ||| |||||||||||||||||||||||| ||||||||||| | |||||||
seq2  ATGGGACCCTCTCAAATTCATGTTCTGC-TTTTCACTTTGGGGTTCGAAT  946

seq1  CTTGCAATTGACTTGCATTTCTTCCTTACCTTACTTTCCATACATGG-AT  999
      | ||||  ||||||||||||| |||||| |||||||| ||||||||| ||
seq2  C-TGCA--TGACTTGCATTTC-TCCTTA-CTTACTTT-CATACATGGAAT  990

seq1  ATGTAGTTGTGTCATGGA-TGTGAAGATGGGTAAT  1033
      ||||||| || ||||||| ||||||||| ||||||
seq2  ATGTAGTGGT-TCATGGATTGTGAAGAT-GGTAAT  1023