BAC Information

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BAC

Clone NameB6Ng01-130I09
Chromosome13 (Build37)
Map Location 66,456,954 - 66,457,857
singlet/doubletsinglet
Overlap geneLOC100041915
Upstream geneEG665742, LOC665750, LOC665753, EG544944, EG665767, LOC665777, EG628648, LOC665809, LOC100042404, LOC628722, LOC665851, Vmn2r-ps99, LOC628794, EG665897, LOC100041855, EG628746, LOC100042434, LOC100041892, EG665974
Downstream gene2410141K09Rik, C330014B19Rik, Mzf6d, Vmn2r-ps106, LOC666027, LOC100042492, LOC100041947, EG382769, LOC666052, EG432768, LOC666061, Uqcrb, Mterfd1, Ptdss1, Zfp712, Zfp708, Zfp759, Rsl1, LOC674699, Zfp455, Zfp458, Zfp457, A230042K10Rik, E130120F12Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-130I09.bB6Ng01-130I09.g
ACCDH931815DH931816
length9041,255
definitionDH931815|Mus musculus domesticus DNA, BAC clone: B6Ng01-130I09, 5' end.DH931816|Mus musculus domesticus DNA, BAC clone: B6Ng01-130I09, 3' end.
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
gaattcttaaattgtattcacctctaaagattgctaacatatgaggttta
tttcaagacatttagacagaaatttagcatttctcatattacaaacttta
ctgcaattggaattttgtttcaaacatcgttcttaatcatcattatgcct
tgttttagaatatcattgagaagatacgagttttctctggtaatgttttt
tgctactgatgagatcaacaagaatccttatcatttacccaacacgtctt
tgctattctccttcatggatggcctgtgtgaggataaattgggattctgg
gtaagatatatttagaagaaaaaatcatttggtttttaattatatctgtg
aattagaggatgattgaaacatatatcttacaggaccatcatggaaaaca
gctgtaaaactgtcaatttattctaggacaccatatttaagaatgtgtga
cactggatgagttaacaacattcaaattccatttacattttcctacaaga
aaacttgaacagcgtgcatttatgagtgatgagtatattgctacacactc
agaaacacacatacatacactctcacgtgcacacacacatgttttaaaat
agatatatattatttatataatataaaataaagaattaagtaaatagatc
atagatgtacaaggcaaactatttttgagaacagtgggatgtatcagaga
tagtcaacaatctaataggaatgatatttataacattatgaactaaccag
taccccggagctcttgactctagctgcatatgtatcaaaagatggcctag
tcggccatcactggaaagagagggccattggacttgcaaactgtatatgc
cacagtacaggggaatgccagggccaaaaagtgggaatgggtgggtaggg
gagt
gaattctcctctgaagaaacagactgggaggaagaagcagctcattatga
gaaaaaagggtaccagccaggtaaagtgctagctaatcagttaaggaagc
caaaagcggctggcgaaggccagtttgctgattggcctcagggcagtcgg
cttcaaggtccgccctatgcggagtccccgccctgcgtagtgcgtcagcc
ctgcgcagagaggcagtgcgcagagaggcagtgcgcagactcattcattc
ccagagaggaacaaaggaaaatacaacaggcatttccggtctttgaagga
gccgagggtgggcgtgtccacgctccggtagaatacttacaaattaaaga
aattgccgagtcggtccgtaaatacggaaccaatgctaattttaccttgg
tgcagttagacaggctcgccggcatggcactaactcctgccgactggcaa
acggttgtaaaagccgctctccctagtatgggcaaatatatggaatggag
agcgctttggcacgaagctgcacaagcgcaggcccgagcaaacgcagctg
ctttgactccagagcagagagattggacttttgacttgttaacgggtcag
ggagcttatttctgctgatcagacaaactaccattggggagcttatgccc
agatttcttccacggctattaagggcctggaaggcgctctctcgagcagg
tgaaaccactgggcagttaacaaagataatccagggacctcaggaatcct
tctcagttttgtggccagaatgacagaggcagcagagcgtattttttgga
gagtcagagcaagctgcgcctcttgatagaacagctaatctatgagcaag
ccacaaaggagttgccgagcggccatagccccaagaaagaacaaaggctt
tccagactggctcaggttctgtcgagagcttgggggaaccttctccacaa
tgcaggcttagcggccgccatcctccatcctcagaccgctcatgagcaga
aatgatcagaaggacagttttatgcgaaagcctgggcattttagaaaaga
tgcgagctccagaataaacaggaggaactctccacccttggccctagtgg
ggcagggtacctagagatctgaccagggtcgccccgtggagaggatataa
tggctaagtctttcccactccggaagtcattacactgatgtgccaacggt
aactggccctgttccagagtcctcaataatgtggaaccggtcgtttgcta
ctgta
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr13_66456954_66457857
seq2: B6Ng01-130I09.b_44_947 (reverse)

seq1  ACTCCCCTACCCACCCATTCCCACTTTTTGGCCCTGGCATTCCCCTGTAC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCCCCTACCCACCCATTCCCACTTTTTGGCCCTGGCATTCCCCTGTAC  50

seq1  TTTGGCATATACAGTTTGCAAGTCCAATGGCCCTCTCTTTCCAGTGATGG  100
      | ||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGGCATATACAGTTTGCAAGTCCAATGGCCCTCTCTTTCCAGTGATGG  100

seq1  CCGACTAGGCCATCTTTTGATACATATGCAGCTAGAGTCAAGAGCTCCGG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCGACTAGGCCATCTTTTGATACATATGCAGCTAGAGTCAAGAGCTCCGG  150

seq1  GGTACTGGTTAGTTCATAATGTTATAAATATCATTCCTATTAGATTGTTG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTACTGGTTAGTTCATAATGTTATAAATATCATTCCTATTAGATTGTTG  200

seq1  ACTATCTCTGATACATCCCACTGTTCTCAAAAATAGTTTGCCTTGTACAT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTATCTCTGATACATCCCACTGTTCTCAAAAATAGTTTGCCTTGTACAT  250

seq1  CTATGATCTATTTACTTAATTCTTTATTTTATATTATATAAATAATATAT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATGATCTATTTACTTAATTCTTTATTTTATATTATATAAATAATATAT  300

seq1  ATCTATTTTAAAACATGTGTGTGTGCACGTGAGAGTGTATGTATGTGTGT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTATTTTAAAACATGTGTGTGTGCACGTGAGAGTGTATGTATGTGTGT  350

seq1  TTCTGAGTGTGTAGCAATATACTCATCACTCATAAATGCACGCTGTTCAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTGAGTGTGTAGCAATATACTCATCACTCATAAATGCACGCTGTTCAA  400

seq1  GTTTTCTTGTAGGAAAATGTAAATGGAATTTGAATGTTGTTAACTCATCC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTTCTTGTAGGAAAATGTAAATGGAATTTGAATGTTGTTAACTCATCC  450

seq1  AGTGTCACACATTCTTAAATATGGTGTCCTAGAATAAATTGACAGTTTTA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGTCACACATTCTTAAATATGGTGTCCTAGAATAAATTGACAGTTTTA  500

seq1  CAGCTGTTTTCCATGATGGTCCTGTAAGATATATGTTTCAATCATCCTCT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCTGTTTTCCATGATGGTCCTGTAAGATATATGTTTCAATCATCCTCT  550

seq1  AATTCACAGATATAATTAAAAACCAAATGATTTTTTCTTCTAAATATATC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTCACAGATATAATTAAAAACCAAATGATTTTTTCTTCTAAATATATC  600

seq1  TTACCCAGAATCCCAATTTATCCTCACACAGGCCATCCATGAAGGAGAAT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACCCAGAATCCCAATTTATCCTCACACAGGCCATCCATGAAGGAGAAT  650

seq1  AGCAAAGACGTGTTGGGTAAATGATAAGGATTCTTGTTGATCTCATCAGT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCAAAGACGTGTTGGGTAAATGATAAGGATTCTTGTTGATCTCATCAGT  700

seq1  AGCAAAAAACATTACCAGAGAAAACTCGTATCTTCTCAATGATATTCTAA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCAAAAAACATTACCAGAGAAAACTCGTATCTTCTCAATGATATTCTAA  750

seq1  AACAAGGCATAATGATGATTAAGAACGATGTTTGAAACAAAATTCCAATT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAAGGCATAATGATGATTAAGAACGATGTTTGAAACAAAATTCCAATT  800

seq1  GCAGTAAAGTTTGTAATATGAGAAATGCTAAATTTCTGTCTAAATGTCTT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGTAAAGTTTGTAATATGAGAAATGCTAAATTTCTGTCTAAATGTCTT  850

seq1  GAAATAAACCTCATATGTTAGCAATCTTTAGAGGTGAATACAATTTAAGA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAATAAACCTCATATGTTAGCAATCTTTAGAGGTGAATACAATTTAAGA  900

seq1  ATTC  904
      ||||
seq2  ATTC  904