BAC Information

Click to search

BAC

Clone NameB6Ng01-131B21
Chromosome13 (Build37)
Map Location 115,637,189 - 115,858,072
singlet/doubletdoublet
Overlap geneItga2, LOC100040975, Itga1
Upstream geneArl15, A430090L17Rik, Ndufs4, LOC100040958, Fst, 4930467J12Rik, Mocs2
Downstream genePelo, LOC100041023, LOC547402, LOC100041045
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-131B21.bB6Ng01-131B21.g
ACCDH932257DH932258
length922303
definitionDH932257|Mus musculus domesticus DNA, BAC clone: B6Ng01-131B21, 5' end.DH932258|Mus musculus domesticus DNA, BAC clone: B6Ng01-131B21, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(115,857,150 - 115,858,072)(115,637,189 - 115,637,493)
sequence
gaattctatgtgttttatgttctcctacttaatggtccatgaactaattg
cttagagttgcaactgtgcttagttccgtgggttaaaaagaaatagtaag
taaacatggatatggtaatgattaaaccaagtgactattcaacatataac
aaacaaattaaatgtggaaattgcaatttaatatgtgctcaagtcactca
aatttgaatttccatccttatctgtgtttctttccattgtctcccattaa
tggtaacataactaagaaggtggctctctcttagtgggctgacaagtaac
caagtaaaacagcctgtatttttctccagtgtgagtgaaggaaatcttag
ttacagaataaccaattacacagtcttatattagccaccaaagagaaaga
actctacacttttactacgtatgttagaggtaaagagtctaaaagattct
tgaaaagagaacatagaggacactaagaccaaggtattatttgtcacaaa
tgcatgtgtatttatatcacctcaaaatacatttaattttaatgaaaatg
cattttacatactttagtaggctaaccaaacatgtgctttctctgttata
atattcataaaaagtgtcattttatcagtggccactcagtaccattgtga
aattttgtgctctgccattacccctaacagaaacctcttatctcttatgg
actcaccccaccccctcttctctttattacatggaacctacaaatctgct
tcctgctctgatgaaaatcccaacactgggtatctggtataaatggagtt
gcatgtattgtattgatttttgcttctagagtcttatgtagtattttcaa
gacttatatattttatagtgtgcatcaagacatcattctttatatgtgtg
tgtgtgtgtgtgagtgtgtgtg
tctccagtttcctacttggcaatgaacttccgtttcctctttctttctta
taccaactaccatgagacactcaccagagatgaaataatgctggcagcta
tctctgaatctcaggaactaggggttaaataaacctctttatctgtaaag
tttgactaaccttgggcattttattgtagcgatgcaaaatgaactaatac
tttgctcgtatgacattagataaatttgtagtaaagatagatagatagat
agatagatagatagatagatagatagatagatagatagatggatggatgt
ctg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr13_115857150_115858072
seq2: B6Ng01-131B21.b_46_967 (reverse)

seq1  CACACACACACACACACACACACACACATATAAAAGAATGATGTCTTGAT  50
      ||||||||| ||||||||||||||||||||| ||||||||||||||||||
seq2  CACACACACTCACACACACACACACACATAT-AAAGAATGATGTCTTGAT  49

seq1  GCACACTATAAAATATATAAGTCTTGAAAATACTACATAAGACTCTAGAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCACACTATAAAATATATAAGTCTTGAAAATACTACATAAGACTCTAGAA  99

seq1  GCAAAAATCAATACAATACATGCAACTCCATTTATACCAGATACCCAGTG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAAAAATCAATACAATACATGCAACTCCATTTATACCAGATACCCAGTG  149

seq1  TTGGGATTTTCATCAGAGCAGGAAGCAGATTTGTAGGTTCCATGTAATAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGGATTTTCATCAGAGCAGGAAGCAGATTTGTAGGTTCCATGTAATAA  199

seq1  AGAGAAGAGGGGGTGGGGTGAGTCCATAAGAGATAAGAGGTTTCTGTTAG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGAAGAGGGGGTGGGGTGAGTCCATAAGAGATAAGAGGTTTCTGTTAG  249

seq1  GGGTAATGGCAGAGCACAAAATTTCACAATGGTACTGAGTGGCCACTGAT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGTAATGGCAGAGCACAAAATTTCACAATGGTACTGAGTGGCCACTGAT  299

seq1  AAAATGACACTTTTTATGAATATTATAACAGAGAAAGCACATGTTTGGTT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAATGACACTTTTTATGAATATTATAACAGAGAAAGCACATGTTTGGTT  349

seq1  AGCCTACTAAAGTATGTAAAATGCATTTTCATTAAAATTAAATGTATTTT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCTACTAAAGTATGTAAAATGCATTTTCATTAAAATTAAATGTATTTT  399

seq1  GAGGTGATATAAATACACATGCATTTGTGACAAATAATACCTTGGTCTTA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGTGATATAAATACACATGCATTTGTGACAAATAATACCTTGGTCTTA  449

seq1  GTGTCCTCTATGTTCTCTTTTCAAGAATCTTTTAGACTCTTTACCTCTAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTCCTCTATGTTCTCTTTTCAAGAATCTTTTAGACTCTTTACCTCTAA  499

seq1  CATACGTAGTAAAAGTGTAGAGTTCTTTCTCTTTGGTGGCTAATATAAGA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATACGTAGTAAAAGTGTAGAGTTCTTTCTCTTTGGTGGCTAATATAAGA  549

seq1  CTGTGTAATTGGTTATTCTGTAACTAAGATTTCCTTCACTCACACTGGAG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTGTAATTGGTTATTCTGTAACTAAGATTTCCTTCACTCACACTGGAG  599

seq1  AAAAATACAGGCTGTTTTACTTGGTTACTTGTCAGCCCACTAAGAGAGAG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAATACAGGCTGTTTTACTTGGTTACTTGTCAGCCCACTAAGAGAGAG  649

seq1  CCACCTTCTTAGTTATGTTACCATTAATGGGAGACAATGGAAAGAAACAC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACCTTCTTAGTTATGTTACCATTAATGGGAGACAATGGAAAGAAACAC  699

seq1  AGATAAGGATGGAAATTCAAATTTGAGTGACTTGAGCACATATTAAATTG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATAAGGATGGAAATTCAAATTTGAGTGACTTGAGCACATATTAAATTG  749

seq1  CAATTTCCACATTTAATTTGTTTGTTATATGTTGAATAGTCACTTGGTTT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATTTCCACATTTAATTTGTTTGTTATATGTTGAATAGTCACTTGGTTT  799

seq1  AATCATTACCATATCCATGTTTACTTACTATTTCTTTTTAACCCACGGAA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCATTACCATATCCATGTTTACTTACTATTTCTTTTTAACCCACGGAA  849

seq1  CTAAGCACAGTTGCAACTCTAAGCAATTAGTTCATGGACCATTAAGTAGG  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAAGCACAGTTGCAACTCTAAGCAATTAGTTCATGGACCATTAAGTAGG  899

seq1  AGAACATAAAACACATAGAATTC  923
      |||||||||||||||||||||||
seq2  AGAACATAAAACACATAGAATTC  922

seq1: chr13_115637189_115637493
seq2: B6Ng01-131B21.g_71_375

seq1  GAATTCTCTCCAGTTTCCTACTTGGCAATGAACTTCCGTTTCCTCTTTCT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTCTCCAGTTTCCTACTTGGCAATGAACTTCCGTTTCCTCTTTCT  50

seq1  TTCTTATACCAACTACCATGAGACACTCACCAGAGATGAAATAATGCTGG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTTATACCAACTACCATGAGACACTCACCAGAGATGAAATAATGCTGG  100

seq1  CAGCTATCTCTGAATCTCAGGAACTAGGGGTTAAATAAACCTCTTTATCT  150
      |||||||||||||||||||||||||||||||||||||||           
seq2  CAGCTATCTCTGAATCTCAGGAACTAGGGGTTAAATAAANNNNNNNNNNN  150

seq1  GTAAAGTTTGACTAACCTTGGGCATTTTATTGTAGCGATGCAAAATGAAC  200
            ||||||||||||||||||||||||||||||||||||||||||||
seq2  NNNNNNTTTGACTAACCTTGGGCATTTTATTGTAGCGATGCAAAATGAAC  200

seq1  TAATACTTTGCTCGTATGACATTAGATAAATTTGTAGTAAAGATAGATAG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATACTTTGCTCGTATGACATTAGATAAATTTGTAGTAAAGATAGATAG  250

seq1  ATAGATAGATAGATAGATAGATAGATAGATAGATAGATAGATAGATGGAT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGATAGATAGATAGATAGATAGATAGATAGATAGATAGATAGATGGAT  300

seq1  GGATG  305
      |||||
seq2  GGATG  305