BAC Information

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BAC

Clone NameB6Ng01-131I24
Chromosome15 (Build37)13 (Build37)
Map Location 13,331,018 - 13,331,5424,759,057 - 4,760,209
singlet/doubletsingletsinglet
Overlap genenone
Upstream genePdzd2, LOC100040109, 6030458C11Rik, Rnasen, Cdh6, LOC100039907
Downstream geneLOC666686, LOC239338, LOC666708
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-131I24.bB6Ng01-131I24.g
ACCDH932588DH932589
length9871,153
definitionDH932588|Mus musculus domesticus DNA, BAC clone: B6Ng01-131I24, 5' end.DH932589|Mus musculus domesticus DNA, BAC clone: B6Ng01-131I24, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(13,331,018 - 13,331,542)(4,759,057 - 4,760,209)
sequence
gaattcctgatctttccaagacttttatcatgaatgggtgttggattttg
tcaaatactttctctgcatctaacgagatgaatcatgtggtttttgtctt
tgagtttgtttatatactggattacattgacggatttccgtatattgaac
cattactgcatccctgggatgaaacctacttggtcaggatggatgattgt
tttgatgtgttctttgcttcggttagctagaactttattgaggatttttg
aatagatattcataagggaaattggtctgaagttctctaactttgttggg
tctttttgtggtttaggtaccagaataattgtggcttcatagaatgagtt
gggtagagtaccttctgtttctattttgtggaatagtttgtgacgaactg
acattagatcttctttgaaggtctgatagaactctgcactaaacccatct
ggtcctggggtttatttggttgggagacaattaatgacagcttctatttc
tttaggggatataggactgtttagatcattaacctgatcttgatttaact
ttggtactgggtatctatctagagacatgtccatttcatccaggttctcc
agttttgttcagtatagccttttgtagaaggatctgatggtgttttggat
ttcttcaggatctgttgttatgtctccattttcatttctgattttgttaa
ttaggatgctttccctgtgccctctattgagtctgactaagggtttatct
attttgttgattttctcaaagaaccagctcctcgtttggttgattctttg
aatagttcttcttgtttccacttggttgattttgcccctgagttttacta
tttcctgccgtctactcttcttgggttatttgattccttttgttctagag
cttttagatgtgttcttaagctgctagtgtgtggtcactctagtttcttt
ttggaggcactcagatctatgagttttctcttagaaa
gaattctctagaagaaagaaagaaacaaagaaaaaagggaaggaaagaaa
aacggaaaaaaacaaggaaggaaactatttctaactcatttgttggggcc
ggcctgcggctctcatgtctgggttcgagcctgggaggcatcttcgagct
gaaagaaaaggaaactaggcggagagagagagagatggagccaagacagt
attctgatcaaggctcaaatttttaatggcagacacgctttataaaagac
aggggaagcccattccggccaaatcatccttggagcccagctgcaggtga
ccacatgtaggctcctgaacagctaggctgactcccagcaggtagcagca
gcagcagtggtagaacaatagagtttatcctgggaggctggctccaccct
aagtaatctcctcagtgacaacaaagtcaaggtctggctcagcctgcttc
aggcttgtgggaggctacaagccaatataccattataaacaaaaaacaaa
caaacaaacaaacaaacaaacaaaaaatgtacctcaaaagagaagaacct
gcacagatctttgccccttttgaaggaaatgcaataaataacacaataaa
ataggcttatgtgctttgactttgagaattacctaagagattcagggata
gtttaccacatgactattaggcaatgtaacgcacactaatcctataagcc
acaaaatatacttattacagatcaacaaacctaaaagtgagaaaacataa
tatattaaaacactcagtaaacaaggaataacttcaattaattcaacttt
agatactgtttaaagaatacttgtagaagcaagaaaacagagattatagc
caacaatatgcttactgcatcttgtagcagaaattctagcaatgctaatt
atggaaagaacagaggtaaacaacacccataaaaccatgtctacttcatt
tgatgtgctcttattggtaggaatactcagaagtcataaaactgtcagag
ttgaatataaccagtttaaagagaaagatcatgttgaataaactagttgt
atttaagaacaatgataaagaaaaattttgaaattaaaatttgcaaacaa
attccagctggatttttattaaaaaaataatatttgatacacttggacac
aaa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr15_13331018_13331542
seq2: B6Ng01-131I24.b_46_572 (reverse)

seq1  GATCTAAACAGTCCTATATCGCCTAAAGATATAGAAACAGTCATTAATAG  50
      |||||||||||||||||||| |||||||| |||||| | ||||||||| |
seq2  GATCTAAACAGTCCTATATCCCCTAAAGAAATAGAAGCTGTCATTAATTG  50

seq1  TCTCCCAACCAAA-AAAGCCCAGGACTAGATGGGTTTAGTGCAGAGTTCT  99
      ||||||||||||| ||| |||||||| |||||||||||||||||||||||
seq2  TCTCCCAACCAAATAAACCCCAGGACCAGATGGGTTTAGTGCAGAGTTCT  100

seq1  ATCAGACCTTCAAAGAATATCTAATCCCAGTTCTTCACAAACTATTCTAC  149
      ||||||||||||||||| |||||||  |||||| ||||||||||||| ||
seq2  ATCAGACCTTCAAAGAAGATCTAATGTCAGTTCGTCACAAACTATTCCAC  150

seq1  AAAATAGAAACAGAAGGTACTCTACCCAACTCATTCTATGAAGCCACAAT  199
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAATAGAAACAGAAGGTACTCTACCCAACTCATTCTATGAAGCCACAAT  200

seq1  TAGTCTGATACCTAAACCACAAAAAGACCCAACAAAGATAGAGAACTTCA  249
      || |||| ||||||||||||||||||||||||||||| ||||||||||||
seq2  TATTCTGGTACCTAAACCACAAAAAGACCCAACAAAGTTAGAGAACTTCA  250

seq1  GACCAATTTCCCTTATGAATATCGATGCAAAAATACTCAATAAAGTTTTC  299
      ||||||||||||||||||||||| || ||||||| |||||||||||| | 
seq2  GACCAATTTCCCTTATGAATATCTATTCAAAAATCCTCAATAAAGTTCTA  300

seq1  GCTTACCGAATCCAAGAACACATCAAAACAATCATCCATCCTGACCAAGT  349
      ||| |||||| | |||||||||||||||||||||||||||||||||||||
seq2  GCTAACCGAAGCAAAGAACACATCAAAACAATCATCCATCCTGACCAAGT  350

seq1  AGGTTTCATCCCAGGGATGCAGGGATGGTTCAATATACGGAAATCCATTA  399
      ||||||||||||||||||||||  |||||||||||||||||||||| | |
seq2  AGGTTTCATCCCAGGGATGCAGTAATGGTTCAATATACGGAAATCCGTCA  400

seq1  ATGTAATCCAGTATGTAAACAAACTCAAAGACAAAAACCACATGATT-AT  448
      |||||||||||||| |||||||||||||||||||||||||||||||| ||
seq2  ATGTAATCCAGTATATAAACAAACTCAAAGACAAAAACCACATGATTCAT  450

seq1  CTCGTTAGATGCAGAGAAAGCATTTGACAAAATCCAACACCCATTCATGA  498
      |||||||||||||||||||| |||||||||||||||||||||||||||||
seq2  CTCGTTAGATGCAGAGAAAGTATTTGACAAAATCCAACACCCATTCATGA  500

seq1  TAAAAGTCTTGGAAAGATCAGGAATTC  525
      |||||||||||||||||||||||||||
seq2  TAAAAGTCTTGGAAAGATCAGGAATTC  527

seq1: chr13_4759057_4760209
seq2: B6Ng01-131I24.g_69_1221

seq1  GAATTCTCTAGAAGAAAGAAAGAAACAAAGAAAAAAGGGAAGGAAAGAAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTCTAGAAGAAAGAAAGAAACAAAGAAAAAAGGGAAGGAAAGAAA  50

seq1  AACGGAAAAAAACAAGGAAGGAAACTATTTCTAACTCATTTGTTGGGGCC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACGGAAAAAAACAAGGAAGGAAACTATTTCTAACTCATTTGTTGGGGCC  100

seq1  GGCCTGCGGCTCTCATGTCTGGGTTCGAGCCTGGGAGGCATCTTCGAGCT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCCTGCGGCTCTCATGTCTGGGTTCGAGCCTGGGAGGCATCTTCGAGCT  150

seq1  GAAAGAAAAGGAAACTAGGCGGAGAGAGAGAGAGATGGAGCCAAGACAGT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAGAAAAGGAAACTAGGCGGAGAGAGAGAGAGATGGAGCCAAGACAGT  200

seq1  ATTCTGATCAAGGCTCAAATTTTTAATGGCAGACACGCTTTATAAAAGAC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCTGATCAAGGCTCAAATTTTTAATGGCAGACACGCTTTATAAAAGAC  250

seq1  AGGGGAAGCCCATTCCGGCCAAATCATCCTTGGAGCCCAGCTGCAGGTGA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGGAAGCCCATTCCGGCCAAATCATCCTTGGAGCCCAGCTGCAGGTGA  300

seq1  CCACATGTAGGCTCCTGAACAGCTAGGCTGACTCCCAGCAGGTAGCAGCA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACATGTAGGCTCCTGAACAGCTAGGCTGACTCCCAGCAGGTAGCAGCA  350

seq1  GCAGCAGTGGTAGAACAATAGAGTTTATCCTGGGAGGCTGGCTCCACCCT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGCAGTGGTAGAACAATAGAGTTTATCCTGGGAGGCTGGCTCCACCCT  400

seq1  AAGTAATCTCCTCAGTGACAACAAAGTCAAGGTCTGGCTCAGCCTGCTTC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTAATCTCCTCAGTGACAACAAAGTCAAGGTCTGGCTCAGCCTGCTTC  450

seq1  AGGCTTGTGGGAGGCTACAAGCCAATATACCATTATAAACAAAAAACAAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCTTGTGGGAGGCTACAAGCCAATATACCATTATAAACAAAAAACAAA  500

seq1  CAAACAAACAAACAAACAAACAAAAAATGTACCTCAAAAGAGAAGAACCT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAACAAACAAACAAACAAACAAAAAATGTACCTCAAAAGAGAAGAACCT  550

seq1  GCACAGATCTTTGCCCCTTTTGAAGGAAATGCAATAAATAACACAATAAA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCACAGATCTTTGCCCCTTTTGAAGGAAATGCAATAAATAACACAATAAA  600

seq1  ATAGGCTTATGTGCTTTGACTTTGAGAATTACCTAAGAGATTCAGGGATA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGGCTTATGTGCTTTGACTTTGAGAATTACCTAAGAGATTCAGGGATA  650

seq1  GTTTACCACATGACTATTAGGCAATGTAACGCACACTAATCCTATAAGCC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTACCACATGACTATTAGGCAATGTAACGCACACTAATCCTATAAGCC  700

seq1  ACAAAATATACTTATTACAGATCAACAAACCTAAAAGTGAGAAAACATAA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAAATATACTTATTACAGATCAACAAACCTAAAAGTGAGAAAACATAA  750

seq1  TATATTAAAACACTCAGTAAACAAGGAATAACTTCAATTAATTCAACTTT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATATTAAAACACTCAGTAAACAAGGAATAACTTCAATTAATTCAACTTT  800

seq1  AGATACTGTTTAAAGAATACTTGTAGAAGCAAGAAAACAGAGATTATAGC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATACTGTTTAAAGAATACTTGTAGAAGCAAGAAAACAGAGATTATAGC  850

seq1  CAACAATATGCTTACTGCATCTTGTAGCAGAAATTCTAGCAATGCTAATT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAACAATATGCTTACTGCATCTTGTAGCAGAAATTCTAGCAATGCTAATT  900

seq1  ATGGAAAGAACAGAGGTAAACAACACCCATAAAACCATGTCTACTTCATT  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGAAAGAACAGAGGTAAACAACACCCATAAAACCATGTCTACTTCATT  950

seq1  TGATGTGCTCTTATTGGTAGGAATTACTCAGGAAGTCATAAAACTGTCAG  1000
      ||||||||||||||||||||||| |||||| |||||||||||||||||||
seq2  TGATGTGCTCTTATTGGTAGGAA-TACTCA-GAAGTCATAAAACTGTCAG  998

seq1  AGTTG-ATATAACCAGTTTAAAGAGACAAGATCAATGTGAATAAACTAGT  1049
      ||||| |||||||||||||||||||| |||||||   |||||||||||||
seq2  AGTTGAATATAACCAGTTTAAAGAGA-AAGATCATGTTGAATAAACTAGT  1047

seq1  TGTATTTAAGAACAATGATAAAG-AAAATTTTGAAATTAAAAATTTGCAA  1098
      ||||||||||||||||||||||| |||||||||||||| |||||||||||
seq2  TGTATTTAAGAACAATGATAAAGAAAAATTTTGAAATT-AAAATTTGCAA  1096

seq1  AC-AATTCCAGTTG--ATTTTATAAAAAAAATTAATTATTTTAAATACAC  1145
      || |||||||| ||   |||||| ||||||||  | |||||   ||||||
seq2  ACAAATTCCAGCTGGATTTTTATTAAAAAAAT--AATATTT--GATACAC  1142

seq1  TTG---ACAAA  1153
      |||   |||||
seq2  TTGGACACAAA  1153