BAC Information

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BAC

Clone NameB6Ng01-132H06
Chromosome13 (Build37)
Map Location 76,764,861 - 76,865,729
singlet/doubletdoublet
Overlap geneMctp1, LOC666603
Upstream geneLOC100042986, Ell2, LOC666786, Glrx, Rhobtb3, LOC666553, LOC622313, Spata9, Rfesd, LOC100043008, Gpr150, Arsk, AK129128, Gm276
Downstream geneEG666607, Ankrd32, 2210408I21Rik, LOC631139, LOC675063, D13Mgi7, 1110033M05Rik
LinkOpen Mouse BAC browser

no map image available.



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-132H06.bB6Ng01-132H06.g
ACCDH933252DH933253
length1,1701,045
definitionDH933252|Mus musculus domesticus DNA, BAC clone: B6Ng01-132H06, 5' end.DH933253|Mus musculus domesticus DNA, BAC clone: B6Ng01-132H06, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(76,764,861 - 76,765,938)(76,864,675 - 76,865,729)
sequence
gaattcttctgacaaatggagattccctatagatacttaaaagaacagcc
aagttactctcatatgcaagtatttaccaagtcctaggaaaaaggggggt
tgtggaattgcattattcatgataaggtctgctagagcagaactccctgg
tactagctttctcaaggctcaaaggagtagcataaattgtgactaggata
tgaaatccttacctgtaattagctgactctaggcagggctgttttatctt
tactgtaaacattgcctgcttcctgtcagtcctttgaaggcatccctctt
ttttgtgtcagatacttcaatgtaccttgcctgctgtgacaccctactcc
ttgttttctgtattgtataagactggtgctcaatttgaaataatttcatc
cagatacagcactcccttgtgtctgtgtccttttgtcattcatttctggc
caacccctgctcacctgcaaccagaaccccattccctgcagatcagcgac
ccaatagaggttttctgcagcagccatatatgttaagaaactaaccctga
gccttctgagagagcaataataactctaactactgaaccatccccacagc
tcttattaaacattatctttaacatatcatctaagggtagatgttataaa
gaaagatattagaatcttaaatgcttcatatttctattcattatattctc
ataactatacagcctacacatctgtggaaagtgtgagaactaaaaagtag
gaagaaaatcaagtcaagcttcgtttttttatcttatgttcttggggact
ctctgactccttcattatatctccatgtgtatgtcttggggactctgact
ccttcttatagccaagtgtatgctcttggggacttcttgactccctcatc
ttatagccatatgtatgttcttgaggattctctgactactttatcatatc
accatgtgtatgttcttagggactctgtgactactttcagtgttgatata
cttcataccagcattcagtgtgtacccacttctcactaacttgtttctct
gaattctttccatgtagtaaaatacttcaaatttagccacttctgtgttc
tagaaatctgaacataatcactctcggttcttgggcttttcgggctaact
tgaagtaacaggctctctaa
gaattcagcacagatgggtactctgaaaatagaaggcattaagttaggct
gcaaatgaggaacacctggcagcaaggacatccttgaaacacagtcaaag
taatttgagttatggcaatagcttgacactttttgggagaaaatctttgt
gtcaaaggtgaatgtgactggagataaacaatgaagaggaaggaaaagaa
gacaaattgaatggtattgtgatgaataatttttccattctcatttgatt
ttcttctcattcatatgtaagaagtcactgactgtcacctcttgattgct
attttttttaattataaatgcattgtgcctgtgatgtaaatttgagccag
ttgggaggtcttttcaaggactgttgacaataagtaatgtgagaaatatc
cttgccaatgctaccacttccctctcaatcagaggaactcaatagttcct
ttgtctatcttgagaactaattccatcccttaagctctcaggttgatgag
atccttaaagtgtccttctctacagactatccattatcaaatctcccaaa
taaccagaagggcagccacaccatctaagcctttggtaatactataggtg
ggtggtctggggagacacaggactttggactagttattttcatttatgaa
gtgctgccctgaattaaactagcaaagaaaaccaacacaggattaatgta
tcactaaactgtcttgacttgttttaacctcatacaggcaaacctgccaa
tatccttccacatcacctctgagaactcttacttagagcctcatcatctt
ttaatagagttttcaacagtctcctaatttgtctgcagattaatgcattt
tctacaacgtatgaccagaggtaagttttttttcccttacaggcaaatac
aatcatgtcattttccctttccagaccctgcaaattctcattgctatttc
ataaagttcacaaatcttaccatggacacaggctttcacagtttagtgtt
gggcatctctctttcactctgtagcatgtagcatgggttttctct
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr13_76764861_76765938
seq2: B6Ng01-132H06.b_148_1214

seq1  GGAATTGCATTATTCATGATAAGGTCTGCTAGAGCAGAACTCCCTGGTAC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAATTGCATTATTCATGATAAGGTCTGCTAGAGCAGAACTCCCTGGTAC  50

seq1  TAGCTTTCTCAAGGCTCAAAGGAGTAGCATAAATTGTGACTAGGATATGA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGCTTTCTCAAGGCTCAAAGGAGTAGCATAAATTGTGACTAGGATATGA  100

seq1  AATCCTTACCTGTAATTAGCTGACTCTAGGCAGGGCTGTTTTATCTTTAC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCCTTACCTGTAATTAGCTGACTCTAGGCAGGGCTGTTTTATCTTTAC  150

seq1  TGTAAACATTGCCTGCTTCCTGTCAGTCCTTTGAAGGCATCCCTCTTTTT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTAAACATTGCCTGCTTCCTGTCAGTCCTTTGAAGGCATCCCTCTTTTT  200

seq1  TGTGTCAGATACTTCAATGTACCTTGCCTGCTGTGACACCCTACTCCTTG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGTCAGATACTTCAATGTACCTTGCCTGCTGTGACACCCTACTCCTTG  250

seq1  TTTTCTGTATTGTATAAGACTGGTGCTCAATTTGAAATAATTTCATCCAG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTCTGTATTGTATAAGACTGGTGCTCAATTTGAAATAATTTCATCCAG  300

seq1  ATACAGCACTCCCTTGTGTCTGTGTCCTTTTGTCATTCATTTCTGGCCAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATACAGCACTCCCTTGTGTCTGTGTCCTTTTGTCATTCATTTCTGGCCAA  350

seq1  CCCCTGCTCACCTGCAACCAGAACCCCATTCCCTGCAGATCAGCGACCCA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCCTGCTCACCTGCAACCAGAACCCCATTCCCTGCAGATCAGCGACCCA  400

seq1  ATAGAGGTTTTCTGCAGCAGCCATATATGTTAAGAAACTAACCCTGAGCC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGAGGTTTTCTGCAGCAGCCATATATGTTAAGAAACTAACCCTGAGCC  450

seq1  TTCTGAGAGAGCAATAATAACTCTAACTACTGAACCATCCCCACAGCTCT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTGAGAGAGCAATAATAACTCTAACTACTGAACCATCCCCACAGCTCT  500

seq1  TATTAAACATTATCTTTAACATATCATCTAAGGGTAGATGTTATAAAGAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTAAACATTATCTTTAACATATCATCTAAGGGTAGATGTTATAAAGAA  550

seq1  AGATATTAGAATCTTAAATGCTTCATATTTCTATTCATTATATTCTCATA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATATTAGAATCTTAAATGCTTCATATTTCTATTCATTATATTCTCATA  600

seq1  ACTATACAGCCTACACATCTGTGGAAAGTGTGAGAACTAAAAAGTAGGAA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTATACAGCCTACACATCTGTGGAAAGTGTGAGAACTAAAAAGTAGGAA  650

seq1  GAAAATCAAGTCAAGCTTCGTTTTTTTATCTTATGTTCTTGGGGACTCTC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAATCAAGTCAAGCTTCGTTTTTTTATCTTATGTTCTTGGGGACTCTC  700

seq1  TGACTCCTTCATTATATCTCCATGTGTATGTCTTGGGGACTCTGACTCCT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACTCCTTCATTATATCTCCATGTGTATGTCTTGGGGACTCTGACTCCT  750

seq1  TCTTATAGCCAAGTGTATGCTCTTGGGGACTTCTTGACTCCCTCATCTTA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTATAGCCAAGTGTATGCTCTTGGGGACTTCTTGACTCCCTCATCTTA  800

seq1  TAGCCATATGTATGTTCTTGAGGATTCTCTGACTACTTTATCATATCACC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGCCATATGTATGTTCTTGAGGATTCTCTGACTACTTTATCATATCACC  850

seq1  ATGTGTATGTTCTTAGGGAACTCTGTGACTACTTTCAGTGTTGATATACT  900
      |||||||||||||||||| |||||||||||||||||||||||||||||||
seq2  ATGTGTATGTTCTTAGGG-ACTCTGTGACTACTTTCAGTGTTGATATACT  899

seq1  TCATAACCAGCATTCAGTTGTGTACCCAACTTCTCAACTAACTTGTTTCT  950
      |||| |||||||||||| ||||||||| ||||||| ||||||||||||||
seq2  TCAT-ACCAGCATTCAG-TGTGTACCC-ACTTCTC-ACTAACTTGTTTCT  945

seq1  CCTGAATTCTTTCCCATGTAGTAAAAATACTCCAAATTTAGCCACTTCTG  1000
       ||||||||||| ||||||||| |||||||| ||||||||||||||||||
seq2  -CTGAATTCTTT-CCATGTAGT-AAAATACTTCAAATTTAGCCACTTCTG  992

seq1  TGTTCTCAGAAATACTGAAC--TATCACTCTCGTTCTTTGGGCTTTTCTG  1048
      |||||| |||||| ||||||   |||||||||| |  |||||||||||  
seq2  TGTTCT-AGAAAT-CTGAACATAATCACTCTCGGTTCTTGGGCTTTTC--  1038

seq1  GAGCTAACTTTGAAGTAACCAGGCTC-CTAA  1078
      | |||||| ||||||||| ||||||| ||||
seq2  GGGCTAAC-TTGAAGTAA-CAGGCTCTCTAA  1067

seq1: chr13_76864675_76865729
seq2: B6Ng01-132H06.g_65_1109 (reverse)

seq1  AGAGAGAAACACCATGCTACATGCTACAGAGTGAAAGAGAGATGCCCAAA  50
        |||||||  |||||||||||||||||||||||||||||||||||| ||
seq2  --AGAGAAAACCCATGCTACATGCTACAGAGTGAAAGAGAGATGCCC-AA  47

seq1  CACCTAAACTGTGAGAGCCTGTTGTCCATGGTAAGATTTGTGAACTTTAT  100
      || ||||||||||| |||||| ||||||||||||||||||||||||||| 
seq2  CA-CTAAACTGTGAAAGCCTG-TGTCCATGGTAAGATTTGTGAACTTTA-  94

seq1  TGAAATAGCAATGAGGAATTATGGCAGGGTCTGGAAAGGGAAAATGACAT  150
      ||||||||||||||| | ||   |||||||||||||||||||||||||||
seq2  TGAAATAGCAATGAGAATTT---GCAGGGTCTGGAAAGGGAAAATGACAT  141

seq1  GATTGTATTTGCCTGTAAGGGAAAAAAAAACTTACCTCTGGTCATACGTT  200
      ||||||||||||||||||||| ||||||||||||||||||||||||||||
seq2  GATTGTATTTGCCTGTAAGGG-AAAAAAAACTTACCTCTGGTCATACGTT  190

seq1  GTAGAAAATGCATTAATCTGCAGACAAATTAGGAGACTGTTGAAAACTCT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAGAAAATGCATTAATCTGCAGACAAATTAGGAGACTGTTGAAAACTCT  240

seq1  ATTAAAAGATGATGAGGCTCTAAGTAAGAGTTCTCAGAGGTGATGTGGAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTAAAAGATGATGAGGCTCTAAGTAAGAGTTCTCAGAGGTGATGTGGAA  290

seq1  GGATATTGGCAGGTTTGCCTGTATGAGGTTAAAACAAGTCAAGACAGTTT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGATATTGGCAGGTTTGCCTGTATGAGGTTAAAACAAGTCAAGACAGTTT  340

seq1  AGTGATACATTAATCCTGTGTTGGTTTTCTTTGCTAGTTTAATTCAGGGC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGATACATTAATCCTGTGTTGGTTTTCTTTGCTAGTTTAATTCAGGGC  390

seq1  AGCACTTCATAAATGAAAATAACTAGTCCAAAGTCCTGTGTCTCCCCAGA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCACTTCATAAATGAAAATAACTAGTCCAAAGTCCTGTGTCTCCCCAGA  440

seq1  CCACCCACCTATAGTATTACCAAAGGCTTAGATGGTGTGGCTGCCCTTCT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACCCACCTATAGTATTACCAAAGGCTTAGATGGTGTGGCTGCCCTTCT  490

seq1  GGTTATTTGGGAGATTTGATAATGGATAGTCTGTAGAGAAGGACACTTTA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTTATTTGGGAGATTTGATAATGGATAGTCTGTAGAGAAGGACACTTTA  540

seq1  AGGATCTCATCAACCTGAGAGCTTAAGGGATGGAATTAGTTCTCAAGATA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGATCTCATCAACCTGAGAGCTTAAGGGATGGAATTAGTTCTCAAGATA  590

seq1  GACAAAGGAACTATTGAGTTCCTCTGATTGAGAGGGAAGTGGTAGCATTG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACAAAGGAACTATTGAGTTCCTCTGATTGAGAGGGAAGTGGTAGCATTG  640

seq1  GCAAGGATATTTCTCACATTACTTATTGTCAACAGTCCTTGAAAAGACCT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAAGGATATTTCTCACATTACTTATTGTCAACAGTCCTTGAAAAGACCT  690

seq1  CCCAACTGGCTCAAATTTACATCACAGGCACAATGCATTTATAATTAAAA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCAACTGGCTCAAATTTACATCACAGGCACAATGCATTTATAATTAAAA  740

seq1  AAAATAGCAATCAAGAGGTGACAGTCAGTGACTTCTTACATATGAATGAG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAATAGCAATCAAGAGGTGACAGTCAGTGACTTCTTACATATGAATGAG  790

seq1  AAGAAAATCAAATGAGAATGGAAAAATTATTCATCACAATACCATTCAAT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAAAATCAAATGAGAATGGAAAAATTATTCATCACAATACCATTCAAT  840

seq1  TTGTCTTCTTTTCCTTCCTCTTCATTGTTTATCTCCAGTCACATTCACCT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTCTTCTTTTCCTTCCTCTTCATTGTTTATCTCCAGTCACATTCACCT  890

seq1  TTGACACAAAGATTTTCTCCCAAAAAGTGTCAAGCTATTGCCATAACTCA  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGACACAAAGATTTTCTCCCAAAAAGTGTCAAGCTATTGCCATAACTCA  940

seq1  AATTACTTTGACTGTGTTTCAAGGATGTCCTTGCTGCCAGGTGTTCCTCA  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTACTTTGACTGTGTTTCAAGGATGTCCTTGCTGCCAGGTGTTCCTCA  990

seq1  TTTGCAGCCTAACTTAATGCCTTCTATTTTCAGAGTACCCATCTGTGCTG  1050
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGCAGCCTAACTTAATGCCTTCTATTTTCAGAGTACCCATCTGTGCTG  1040

seq1  AATTC  1055
      |||||
seq2  AATTC  1045