BAC Information

Click to search

BAC

Clone NameB6Ng01-132N23
Chromosome13 (Build37)
Map Location 117,667,712 - 117,821,569
singlet/doubletdoublet
Overlap geneParp8
Upstream geneEG623174, Isl1, EG668276, Gm280, LOC100041169
Downstream geneLOC668288, LOC623312, Emb, EG623365, LOC382807, Hcn1, LOC100041695
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-132N23.bB6Ng01-132N23.g
ACCDH933567DH933568
length1,089615
definitionDH933567|Mus musculus domesticus DNA, BAC clone: B6Ng01-132N23, 5' end.DH933568|Mus musculus domesticus DNA, BAC clone: B6Ng01-132N23, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(117,667,712 - 117,668,805)(117,820,957 - 117,821,569)
sequence
gaattctgccctggagaacagtgacgagaagacagcattggactggaaca
aatttttgagatcaaaaccaggcccaattagcacgggtacctgagctccg
gtagcgatctcgtcggcagcttcattcatcactcccagggtttgaaaagc
aaacacacacagctctcgctcacatactgtgggctgcaaaggaacaggca
tcagctacagtatatgtttccatctttcaattcataaatgtaaagttgct
ctacataataaatgggacatatagagcttagagtgtttgaggaaaggaaa
tgatatcatattacttattaatatattattaattcttacactgaagtaac
aatagtcttctggtagagtcacaactacaataacagatcatccgttccag
agagttgtaggcatttccattcagaacaacttagctactgatgaaaagaa
tattaagcagtaaaatacatctattcaaaatataatgcatagtagatgta
ttcattttgaaaaatatttctctaagttggggatataatcaagtcacaca
caaaaactacatttaaaaaaaaaaggatatataatgggcgaatctcactt
ttccctaggaaatttattagtgagaattaagcatgactcgacttactcgc
cacctagctcttgaaagattggtttcgttgcatttgttgcacaggctctt
gacttcaataacctcccgaggtcaacggcactgaaatatacactctccaa
ttactttggaggagctctcatctttcaaatctaatatagtgtcatcccct
tgatttatcttatctccccagttacattgcattaggtagctgatgaagcc
taacacagcgcgatccactgagcttctgcacagcagacaaaaggcatttg
ttagtgccactgctcttgtgctcgctgcttctagaggatggcttggtctg
tgcatagcactgggaaagtatggctccattctgggcattctttatgttca
gggaagcccacatgtgtggcttcatgcatagaagcctgagttatccgcaa
ctttccacagatccctgaagagaagtctaggagaaggag
gaattctctttcctgaaataggggcaggcttttcagaagtgaaggttagc
tggttagaattgggttatttagaagcatgttcatacaatgccttgtgtgt
gctccttagggggtgggaaccagtcagcctgccaacactggctcagggcc
ttgctatttctcttatctggtcagtttggttatctcatacccagcattcc
caacctaaccactttaaccctaacatacttcctaacccaacctttgtttt
gttttgttttgttttgtttttatcttatctcaagtactaagttatatatc
cagcccttgctctcttccctcctctccttgctgtttttgaggcagggctc
cagatacctcaggctagcctcaaacttgcttgtagcctaggatagccttg
aaattcagagttcctgtgtttctgtatcttacacactgggactgcagcat
tggtcagtgtctaccaactgatgcacatcaactccttccttccttcctat
tttttttttttgggtgtggggggggatgcatgtgacagtcaaaggacaac
ttgaaggagtcacttttctccatcatttatgaagggttctgcggattcaa
attctggtcatcata
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr13_117667712_117668805
seq2: B6Ng01-132N23.b_48_1136

seq1  GAATTCTGCCCTGGAGAACAGTGACGAGAAGACAGCATTGGACTGGAACA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTGCCCTGGAGAACAGTGACGAGAAGACAGCATTGGACTGGAACA  50

seq1  AATTTTTGAGATCAAAACCAGGCCCAATTAGCACGGGTACCTGAGCTCCG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTTTTGAGATCAAAACCAGGCCCAATTAGCACGGGTACCTGAGCTCCG  100

seq1  GTAGCGATCTCGTCGGCAGCTTCATTCATCACTCCCAGGGTTTGAAAAGC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAGCGATCTCGTCGGCAGCTTCATTCATCACTCCCAGGGTTTGAAAAGC  150

seq1  AAACACACACAGCTCTCGCTCACATACTGTGGGCTGCAAAGGAACAGGCA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACACACACAGCTCTCGCTCACATACTGTGGGCTGCAAAGGAACAGGCA  200

seq1  TCAGCTACAGTATATGTTTCCATCTTTCAATTCATAAATGTAAAGTTGCT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGCTACAGTATATGTTTCCATCTTTCAATTCATAAATGTAAAGTTGCT  250

seq1  CTACATAATAAATGGGACATATAGAGCTTAGAGTGTTTGAGGAAAGGAAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTACATAATAAATGGGACATATAGAGCTTAGAGTGTTTGAGGAAAGGAAA  300

seq1  TGATATCATATTACTTATTAATATATTATTAATTCTTACACTGAAGTAAC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATATCATATTACTTATTAATATATTATTAATTCTTACACTGAAGTAAC  350

seq1  AATAGTCTTCTGGTAGAGTCACAACTACAATAACAGATCATCCGTTCCAG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAGTCTTCTGGTAGAGTCACAACTACAATAACAGATCATCCGTTCCAG  400

seq1  AGAGTTGTAGGCATTTCCATTCAGAACAACTTAGCTACTGATGAAAAGAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGTTGTAGGCATTTCCATTCAGAACAACTTAGCTACTGATGAAAAGAA  450

seq1  TATTAAGCAGTAAAATACATCTATTCAAAATATAATGCATAGTAGATGTA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTAAGCAGTAAAATACATCTATTCAAAATATAATGCATAGTAGATGTA  500

seq1  TTCATTTTGAAAAATATTTCTCTAAGTTGGGGATATAATCAAGTCACACA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCATTTTGAAAAATATTTCTCTAAGTTGGGGATATAATCAAGTCACACA  550

seq1  CAAAAACTACATTTAAAAAAAAAAGGATATATAATGGGCGAATCTCACTT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAAACTACATTTAAAAAAAAAAGGATATATAATGGGCGAATCTCACTT  600

seq1  TTCCCTAGGAAATTTATTAGTGAGAATTAAGCATGACTCGACTTACTCGC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCCTAGGAAATTTATTAGTGAGAATTAAGCATGACTCGACTTACTCGC  650

seq1  CACCTAGCTCTTGAAAGATTGGTTTCGTTGCATTTGTTGCACAGGCTCTT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACCTAGCTCTTGAAAGATTGGTTTCGTTGCATTTGTTGCACAGGCTCTT  700

seq1  GACTTCAATAACCTCCCGAGGTCAACGGCACTGAAATATACACTCTCCAA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACTTCAATAACCTCCCGAGGTCAACGGCACTGAAATATACACTCTCCAA  750

seq1  TTACTTTGGAGGAGCTCTCATCTTTCAAATCTAATATAGTGTCATCCCCT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACTTTGGAGGAGCTCTCATCTTTCAAATCTAATATAGTGTCATCCCCT  800

seq1  TGATTTATCTTATCTCCCCAGTTACATTGCATTAGGTAGCTGATGAAGCC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATTTATCTTATCTCCCCAGTTACATTGCATTAGGTAGCTGATGAAGCC  850

seq1  TAACACAGCGCGATCCACTGAGCTTCTGCACAGCAGACAAAAGGCATTTG  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAACACAGCGCGATCCACTGAGCTTCTGCACAGCAGACAAAAGGCATTTG  900

seq1  TTAGTGCCACTGCTCTTGTGCTCGCTGCTTCTAGAGGATGGCTTGGTCTG  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGTGCCACTGCTCTTGTGCTCGCTGCTTCTAGAGGATGGCTTGGTCTG  950

seq1  TTGCATAGCCACTGGGAAAGTATGGCTCCATTCTGGGCATTCTTTATGTT  1000
       ||||||| |||||||||||||||||||||||||||||||||||||||||
seq2  -TGCATAG-CACTGGGAAAGTATGGCTCCATTCTGGGCATTCTTTATGTT  998

seq1  CAGGGAAGGCCCACATGTGTGGCTTCATGCATAGAAAGCCTGAGTTAT-C  1049
      ||||||| |||||||||||||||||||||||||| ||||||||||||| |
seq2  CAGGGAA-GCCCACATGTGTGGCTTCATGCATAG-AAGCCTGAGTTATCC  1046

seq1  GCAACTTTCCCACAGAATCCCTGAAGAG-AGTCTAAGGAGGAGGAG  1094
      |||||||| |||||| |||||||||||| ||||| ||||| |||||
seq2  GCAACTTT-CCACAG-ATCCCTGAAGAGAAGTCT-AGGAGAAGGAG  1089

seq1: chr13_117820957_117821569
seq2: B6Ng01-132N23.g_66_680 (reverse)

seq1  TGTGATGACCTGAGTTTG-ATCCGCAGAA-CCTTCATAAATGATGGAGAA  48
      | |||||||| || |||| |||||||||| ||||||||||||||||||||
seq2  TATGATGACCAGAATTTGAATCCGCAGAACCCTTCATAAATGATGGAGAA  50

seq1  AAGTGACTCCTACAAGTTGTCCTTTGACTGTCACATGCATCCCCCCCCAC  98
      ||||||||||| ||||||||||||||||||||||||||||||||||||||
seq2  AAGTGACTCCTTCAAGTTGTCCTTTGACTGTCACATGCATCCCCCCCCAC  100

seq1  ACCCAAAAAAAAAAAATAGGAAGGAAGGAAGGAGTTGATGTGCATCAGTT  148
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCCAAAAAAAAAAAATAGGAAGGAAGGAAGGAGTTGATGTGCATCAGTT  150

seq1  GGTAGACACTGACCAATGCTGCAGTCCCAGTGTGTAAGATACAGAAACAC  198
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTAGACACTGACCAATGCTGCAGTCCCAGTGTGTAAGATACAGAAACAC  200

seq1  AGGAACTCTGAATTTCAAGGCTATCCTAGGCTACAAGCAAGTTTGAGGCT  248
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAACTCTGAATTTCAAGGCTATCCTAGGCTACAAGCAAGTTTGAGGCT  250

seq1  AGCCTGAGGTATCTGGAGCCCTGCCTCAAAAACAGCAAGGAGAGGAGGGA  298
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCTGAGGTATCTGGAGCCCTGCCTCAAAAACAGCAAGGAGAGGAGGGA  300

seq1  AGAGAGCAAGGGCTGGATATATAACTTAGTACTTGAGATAAGATAAAAAC  348
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGAGCAAGGGCTGGATATATAACTTAGTACTTGAGATAAGATAAAAAC  350

seq1  AAAACAAAACAAAACAAAACAAAGGTTGGGTTAGGAAGTATGTTAGGGTT  398
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAACAAAACAAAACAAAACAAAGGTTGGGTTAGGAAGTATGTTAGGGTT  400

seq1  AAAGTGGTTAGGTTGGGAATGCTGGGTATGAGATAACCAAACTGACCAGA  448
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGTGGTTAGGTTGGGAATGCTGGGTATGAGATAACCAAACTGACCAGA  450

seq1  TAAGAGAAATAGCAAGGCCCTGAGCCAGTGTTGGCAGGCTGACTGGTTCC  498
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGAGAAATAGCAAGGCCCTGAGCCAGTGTTGGCAGGCTGACTGGTTCC  500

seq1  CACCCCCTAAGGAGCACACACAAGGCATTGTATGAACATGCTTCTAAATA  548
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACCCCCTAAGGAGCACACACAAGGCATTGTATGAACATGCTTCTAAATA  550

seq1  ACCCAATTCTAACCAGCTAACCTTCACTTCTGAAAAGCCTGCCCCTATTT  598
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCCAATTCTAACCAGCTAACCTTCACTTCTGAAAAGCCTGCCCCTATTT  600

seq1  CAGGAAAGAGAATTC  613
      |||||||||||||||
seq2  CAGGAAAGAGAATTC  615