BAC Information

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BAC

Clone NameB6Ng01-133F18
Chromosome13 (Build37)
Map Location 60,885,088 - 60,886,277
singlet/doubletsinglet
Overlap geneBC051665
Upstream geneZcchc6, LOC100041267, Gas1, EG328264, Dapk1, LOC218274
Downstream gene2310051M13Rik, 4930486L24Rik, Tpbpb, Ctla2a, Tpbpa, Ctsj, Ctsq, Ctsr, Cts6, Cts8, Cts8-ps, LOC435362, Cts7, Cts7-ps, EG624056, LOC665717, Ctsm, Cts3, EG665401, LOC624140, EG623505, LOC665415, LOC673332, BC052688
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-133F18.bB6Ng01-133F18.g
ACCDH933926DH933927
length1,1701,214
definitionDH933926|Mus musculus domesticus DNA, BAC clone: B6Ng01-133F18, 5' end.DH933927|Mus musculus domesticus DNA, BAC clone: B6Ng01-133F18, 3' end.
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
gaattctgtactgtttgtggaatggtttgcaatagctccatgtgagcaga
agcatgggcagctacgtggaaactacagaaatcagatcagcatggaaagg
ctctgtccctttagtggcaacacttgggacttattaggatggattctact
atatataaaagcaagttctgaggactttgcaatttgttctgctttctaaa
cctggtcaggaaaaacaccttagggtttgtacttacccaggcttcatatg
cgtaggactcccttgtgtccaggcctctgttttccttcacatactggaag
gctagttccatcaagccaccattacaacctacgttgccataggaccagga
gcagtccattaggttctgttcactcagagggaccagtttgcctgtttttc
tgaatatttgtccttccaaggaaccaactgcactaaaagcccaacaagat
ccacaatgaccctaagaagaaagaaaaggttgtcacccacacacaaaaaa
aataatacaggtgtttgatagcagtgcacatgacccaataattccacaag
caatgaagtatatggagctccaccatcagcaagccaaagttggtgtttcc
ttcctggcctcctggtggacagtgatacctggaatgtgttatatgtccta
cctggtctttcacaggagtcacatagccatgatctctccaatcaacagac
ttggggacatcacccagcaagggctcctggaagatggtcatctccttgtg
ccccatgctttgaaagccagtcatcaattctctgaattctgtattggtct
tcaagaaaaggtaaacaaatcattgcaaatggagagatgacttacaatga
actggagaggaaggaccatgttctgcaatccacaccacactcaccaaatc
accaaaggcgttcatctccaagttgaagccatgcttccccttcagatagt
cctcgttgtgcaggccgatcatcttcatgttattctcccacactgctctc
tctgtgctctcattctggaagagatacagtgtgtggtcttctacttcaac
ccagcattagtttccctcagtggctgctgctacagcaacaagaccaggta
ttcttgtccacctctggagcataccagcctgtggcacaggtgttgccaca
agtgttctaagcctgccatg
gaattctcacagagaaaggagcctaccatgatgaaatgcctccttgagat
ccagctgtaaggcatgttctcaattagtgatcaagggggaggacccagcc
cattgtgggtgataccatccctgggctgttaatcctgggttctataagaa
agcaagctgagcaaaccaaggtaaaaaaaaaaatccagcaatcaacacca
ctccatgacctctgcatcagctccttcctccaagtttctgccttgtataa
gttcctgtcctgacttcctttagtgataaacagaaatgtggaagtgtaag
ctgaataaaccctttcctccccaacttgcttagtggtcatgatgtgcagg
aatacaaaccctgactaagacagtcagtaactatgaaaaaccaaatacgt
gagtaataggaacagagcaaagaggagaaacccaagccataagcacagaa
attgatttcaacaacatcatggaagaaaatgtccctaacctaaagaagaa
gttgcctatcaaggtgcaagaagcagattaaacactaagacaggaccaaa
aaataaatcctcctacaacacatattaatcaaaacagtaaacataccaac
aaaggaagatgttaaaagatgcaaagggccgggcgtagtggcacacgcct
ttaatcccagcacttgggaggcagaggcaggcggatttctgagtttgagg
ccaacctggtctacagagtgagttccaggacagccagggctatacagaga
aaccctgtcttaaaaagacaaaacaaaacaaaacaaaacaaacaaacaaa
acaaagacacaaaggaaaccgaccaagcaacatttgaaggctgagccctt
ggagtaagtcctctctttagagtctcagtggacacaaaagccattttgca
attaagttctgtttgggattttgaaagtagcgcattcctcacggaatgtg
tcactctaacctcatatcgcatgaccctgaaagctgctagttatatgtgc
agcaggacacagcaagccttttcatagtctaggctttctttgtagactct
ttctatcactgatcatgcaatgcaaatacttgatagactcaggttcagtg
aagacatattaaggatgtgaactggagctatgagtctatgcaggccctat
gatttcagaagaaacctgagattggaaagtcctggactattgtaaggcaa
tctcttcctctcga
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr13_60885088_60886277
seq2: B6Ng01-133F18.b_47_1216

seq1  GAATTCTGTACTGTTTGTGGAATGGTTTGCAATAGCTCCATGTGAGCAGA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTGTACTGTTTGTGGAATGGTTTGCAATAGCTCCATGTGAGCAGA  50

seq1  AGCATGGGCAGCTACGTGGAAACTACAGAAATCAGATCAGCATGGAAAGG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCATGGGCAGCTACGTGGAAACTACAGAAATCAGATCAGCATGGAAAGG  100

seq1  CTCTGTCCCTTTAGTGGCAACACTTGGGACTTATTAGGATGGATTCTACT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTGTCCCTTTAGTGGCAACACTTGGGACTTATTAGGATGGATTCTACT  150

seq1  ATATATAAAAGCAAGTTCTGAGGACTTTGCAATTTGTTCTGCTTTCTAAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATATAAAAGCAAGTTCTGAGGACTTTGCAATTTGTTCTGCTTTCTAAA  200

seq1  CCTGGTCAGGAAAAACACCTTAGGGTTTGTACTTACCCAGGCTTCATATG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGGTCAGGAAAAACACCTTAGGGTTTGTACTTACCCAGGCTTCATATG  250

seq1  CGTAGGACTCCCTTGTGTCCAGGCCTCTGTTTTCCTTCACATACTGGAAG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGTAGGACTCCCTTGTGTCCAGGCCTCTGTTTTCCTTCACATACTGGAAG  300

seq1  GCTAGTTCCATCAAGCCACCATTACAACCTACGTTGCCATAGGACCAGGA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTAGTTCCATCAAGCCACCATTACAACCTACGTTGCCATAGGACCAGGA  350

seq1  GCAGTCCATTAGGTTCTGTTCACTCAGAGGGACCAGTTTGCCTGTTTTTC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGTCCATTAGGTTCTGTTCACTCAGAGGGACCAGTTTGCCTGTTTTTC  400

seq1  TGAATATTTGTCCTTCCAAGGAACCAACTGCACTAAAAGCCCAACAAGAT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAATATTTGTCCTTCCAAGGAACCAACTGCACTAAAAGCCCAACAAGAT  450

seq1  CCACAATGACCCTAAGAAGAAAGAAAAGGTTGTCACCCACACACAAAAAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACAATGACCCTAAGAAGAAAGAAAAGGTTGTCACCCACACACAAAAAA  500

seq1  AATAATACAGGTGTTTGATAGCAGTGCACATGACCCAATAATTCCACAAG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAATACAGGTGTTTGATAGCAGTGCACATGACCCAATAATTCCACAAG  550

seq1  CAATGAAGTATATGGAGCTCCACCATCAGCAAGCCAAAGTTGGTGTTTCC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATGAAGTATATGGAGCTCCACCATCAGCAAGCCAAAGTTGGTGTTTCC  600

seq1  TTCCTGGCCTCCTGGTGGACAGTGATACCTGGAATGTGTTATATGTCCTA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCTGGCCTCCTGGTGGACAGTGATACCTGGAATGTGTTATATGTCCTA  650

seq1  CCTGGTCTTTCACAGGAGTCACATAGCCATGATCTCTCCAATCAACAGAC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGGTCTTTCACAGGAGTCACATAGCCATGATCTCTCCAATCAACAGAC  700

seq1  TTGGGGACATCACCCAGCAAGGGCTCCTGGAAGATGGTCATCTCCTTGTG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGGGACATCACCCAGCAAGGGCTCCTGGAAGATGGTCATCTCCTTGTG  750

seq1  CCCCATGCTTTGAAAGCCAGTCATCAATTCTCTGAATTCTGTATTGGTCT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCCATGCTTTGAAAGCCAGTCATCAATTCTCTGAATTCTGTATTGGTCT  800

seq1  TCAAGAAAAGGTAAACAAATCATTGCAAATGGAGAGATGACTTACAATGA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAAGAAAAGGTAAACAAATCATTGCAAATGGAGAGATGACTTACAATGA  850

seq1  ACTGGAGAGGAAGGACCATGTTCTGCAATCCACACCACACTCACCAAATC  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGGAGAGGAAGGACCATGTTCTGCAATCCACACCACACTCACCAAATC  900

seq1  ACCAAAGGCGTTCATCTCCAAGTTGAAGCCATGCTTCCCCTTCAGATAGT  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCAAAGGCGTTCATCTCCAAGTTGAAGCCATGCTTCCCCTTCAGATAGT  950

seq1  CCTCGTTGTGCAGGCCGATCATCTTCATGTTATTCTCCCACACTGCTCTC  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCGTTGTGCAGGCCGATCATCTTCATGTTATTCTCCCACACTGCTCTC  1000

seq1  TTCTGTGCTTCTTCATTCTGGAAGAGATACAGTGTGTGGTCTTTCTACTT  1050
       ||||||||   ||||||||||||||||||||||||||||| ||||||||
seq2  -TCTGTGCT--CTCATTCTGGAAGAGATACAGTGTGTGGTC-TTCTACTT  1046

seq1  CAAACCCAGCATTAG-TTCCCTCAGTGGGCCTGCTGCTACAGCCAACAAG  1099
      | ||||||||||||| ||||||||||||  |||||||||||| |||||||
seq2  C-AACCCAGCATTAGTTTCCCTCAGTGG--CTGCTGCTACAG-CAACAAG  1092

seq1  AACCAAGGGTAT--CTGTCCACCTCTGGAAGCCATAACCCAGGCCCTGTG  1147
       ||||  |||||   ||||||||||||||   ||||  ||||  ||||||
seq2  -ACCA--GGTATTCTTGTCCACCTCTGGA--GCATA--CCAG--CCTGTG  1133

seq1  GCACCAAGGTGGTTTGCCACCAGTGTTCATAAAGCCTGCCATG  1190
      ||||  |||||  ||||||| |||||||   ||||||||||||
seq2  GCAC--AGGTG--TTGCCACAAGTGTTC--TAAGCCTGCCATG  1170