BAC Information

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BAC

Clone NameB6Ng01-134F04
Chromosome13 (Build37)
Map Location 58,967,315 - 59,111,602
singlet/doubletdoublet
Overlap geneNtrk2
Upstream geneSpock1, Klhl3, Hnrpa0, 5133401N09Rik, Ubqln1, LOC671252, Gkap1, Kif27, Hnrpk, Rmi1, LOC100041086, Slc28a3, LOC100041510, LOC435361
Downstream geneLOC100041533, Agtpbp1, Mak10, Golph2, 4921517D22Rik, 1700013B16Rik, EG238662, 4932411G14Rik, Isca1, Zcchc6
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-134F04.bB6Ng01-134F04.g
ACCDH934649DH934650
length1,1221,214
definitionDH934649|Mus musculus domesticus DNA, BAC clone: B6Ng01-134F04, 5' end.DH934650|Mus musculus domesticus DNA, BAC clone: B6Ng01-134F04, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(59,110,467 - 59,111,602)(58,967,315 - 58,968,537)
sequence
gaattctgtccccttcttagaaactgggtctcaaagttgatgttaatttg
gaggtcatgtcctggggaacctcacactgctatgaaagccaagttaagga
ctcctctttgcctaccttggctctctcccagaaaaccaagcctgccccac
agcaaagcccagtgaactttaagcaagagaactgtcctgtggataatctg
cagactttgacccgaaacaagggcaaatagattcagatacgtgatttgtt
ttctggctgctgcatgatttcaaagcagttttaacttcttatggtggaaa
cctcctccaccatccgggaaatgaaccagactgggttacaaaccgtctct
gctgctcccagctgatatccatctcccatcacgatggccgaagggtgcct
ccttaaaaatagttttaatgtggcacacgggagtaaagatttatttttta
tttttgaatatgacatattgtctgggccaaacaaattaagttacagcgcg
ggacatcttaagaaaatagtgtcgttttgtgtttctgctaatttataaca
ttcaattctgtagtctaatggatggaaacacatccacggacatcaataaa
aatagctttgggattcggtcactggtatccactgagtgagataaatgcat
aggctggctaaccctcaaagtttcgtgtaactcccctccttgttcagccc
tggagtcccaagatacaatctgacagcggagatcggaaaatcctggaact
tacttcccaagtgacactcatggcagggctcattttattttactgttgta
aggcgtgcatacagttttatgctaaatgaaaacagatgtactcttggtta
atacacagagcctccctgcaataactgccaaatcacttgggtgacatctc
tgcttccacacccttgtgtgtctctcacttgaaatccaccttgagtcttc
cacgatgttcatgtagacagttcccatggagagactaagaaggcctctgc
tctcacagctgatctgagccagaaatttcgtgtcagctcctgagagcaga
gatattgtagctttcttgtgctcagatgggtagggtatgtgtaagtttca
agaccatccacagcactatgag
gaattcaatcctacatgcagaaaagctctccacaagcaggcagatgttca
tggtgacagtcgtgagaccagaagcaagcatgggcttctttttcagggag
gccctgaaatgatcactaagagctgaaaaataaactagttttttgccaca
aggcagggatttggacctgtcatgactagcttctgaccaaatagagcaaa
tttggagaactctaagggccagatgtttcttaagcgtgagcactctgact
ggggtcagatggtcccatccacgtcagcacaccagcaattcaatatgtcc
gccttggagcagaccgacaagaactcgatgatgacactcttattttgaag
cttgtgattctttaggcgttgcagagagtgtctctctggcccactcatcc
aggaagactgtcacagctccaggatgctcattcacacagcagtgggagtt
ggtgacttctgctcccttattcagaagcagttgtctcctatgcaaaaact
cgcgtcagggacaaactataaatatcggaagtgttttcccacagtttctc
ccagtgctgttttgtcaaaagattcatgatgtggggtgaactggcgctct
ctctgctgcacttagaaaggccccaaagtagcagatctagggacggagtg
ttcaagtcaaggaacacagcgagagtaaatttctcctggagttccacaga
agagtagaatgtgaagcccatgctgtttcaatcaccaggacctgttcctt
gtcctggggctaaaactacagagccatagattctttcttgccttgagaaa
ccaaggagaagatggtttgggcacaagccttagataaccagagtaattaa
gattcatccttacagttcttctaatctccagagtactaaggttattggtt
acaccttcctcgctcatccttggggaagactccattctaacaggaaagaa
gagactcaaagctctcagcaaattggtggctgtcagactctgggcttagt
cttctcgtccccctccgaggggcagccttgtcagcagaggcttgctgcca
attgtcagagcatgctgatcaaagcaggactgtccactagagaagaagaa
tgcatttgctctcttactggcaggatttctttggaatcgttagatctttg
aaatctgcagaataaccttgaaggaaaagactatgttgtgaggagattta
gagggggttggagg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr13_59110467_59111602
seq2: B6Ng01-134F04.b_49_1170 (reverse)

seq1  CTCATAGTGCTGTGGATTGTCCTGAAAACTTTACACATACCCTACCCATC  50
      ||||||||||||||||| ||| |||||   ||||||||||||||||||||
seq2  CTCATAGTGCTGTGGATGGTCTTGAAA--CTTACACATACCCTACCCATC  48

seq1  TGAGCACCAGGAAAGCCTACAATATCCTCCTGCTTCTCAGGAGCTGACAC  100
      |||||| || ||||| ||||||||||   |||| ||||||||||||||||
seq2  TGAGCA-CAAGAAAG-CTACAATATC--TCTGC-TCTCAGGAGCTGACAC  93

seq1  GAAATTTCTGGCTCAGAATTCAGCTGTGAGAGCAGAGGCCCTTCCTTAGT  150
      |||||||||||||||||  |||||||||||||||||||||  | ||||||
seq2  GAAATTTCTGGCTCAGA--TCAGCTGTGAGAGCAGAGGCC--TTCTTAGT  139

seq1  CTCCTCCATGGGAACTTGTCTACATGAACATCGTGGAAGACTCAAGGTGG  200
      || |||||||||||| ||||||||||||||||||||||||||||||||||
seq2  CT-CTCCATGGGAAC-TGTCTACATGAACATCGTGGAAGACTCAAGGTGG  187

seq1  ATTTCAAGTGAGGAGACACACAAGGGTGTGGAAGCAGAGATGTCACCCAA  250
      ||||||||||| ||||||||||||||||||||||||||||||||||||||
seq2  ATTTCAAGTGA-GAGACACACAAGGGTGTGGAAGCAGAGATGTCACCCAA  236

seq1  GTGATTTGGCAGTTATTGCAGGGAGGCTCTGTGTATTAACCAAGAGTACA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGATTTGGCAGTTATTGCAGGGAGGCTCTGTGTATTAACCAAGAGTACA  286

seq1  TCTGTTTTCATTTAGCATAAAACTGTATGCACGCCTTACAACAGTAAAAT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGTTTTCATTTAGCATAAAACTGTATGCACGCCTTACAACAGTAAAAT  336

seq1  AAAATGAGCCCTGCCATGAGTGTCACTTGGGAAGTAAGTTCCAGGATTTT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAATGAGCCCTGCCATGAGTGTCACTTGGGAAGTAAGTTCCAGGATTTT  386

seq1  CCGATCTCCGCTGTCAGATTGTATCTTGGGACTCCAGGGCTGAACAAGGA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCGATCTCCGCTGTCAGATTGTATCTTGGGACTCCAGGGCTGAACAAGGA  436

seq1  GGGGAGTTACACGAAACTTTGAGGGTTAGCCAGCCTATGCATTTATCTCA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGGAGTTACACGAAACTTTGAGGGTTAGCCAGCCTATGCATTTATCTCA  486

seq1  CTCAGTGGATACCAGTGACCGAATCCCAAAGCTATTTTTATTGATGTCCG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCAGTGGATACCAGTGACCGAATCCCAAAGCTATTTTTATTGATGTCCG  536

seq1  TGGATGTGTTTCCATCCATTAGACTACAGAATTGAATGTTATAAATTAGC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGATGTGTTTCCATCCATTAGACTACAGAATTGAATGTTATAAATTAGC  586

seq1  AGAAACACAAAACGACACTATTTTCTTAAGATGTCCCGCGCTGTAACTTA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAACACAAAACGACACTATTTTCTTAAGATGTCCCGCGCTGTAACTTA  636

seq1  ATTTGTTTGGCCCAGACAATATGTCATATTCAAAAATAAAAAATAAATCT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTGTTTGGCCCAGACAATATGTCATATTCAAAAATAAAAAATAAATCT  686

seq1  TTACTCCCGTGTGCCACATTAAAACTATTTTTAAGGAGGCACCCTTCGGC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACTCCCGTGTGCCACATTAAAACTATTTTTAAGGAGGCACCCTTCGGC  736

seq1  CATCGTGATGGGAGATGGATATCAGCTGGGAGCAGCAGAGACGGTTTGTA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCGTGATGGGAGATGGATATCAGCTGGGAGCAGCAGAGACGGTTTGTA  786

seq1  ACCCAGTCTGGTTCATTTCCCGGATGGTGGAGGAGGTTTCCACCATAAGA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCCAGTCTGGTTCATTTCCCGGATGGTGGAGGAGGTTTCCACCATAAGA  836

seq1  AGTTAAAACTGCTTTGAAATCATGCAGCAGCCAGAAAACAAATCACGTAT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTAAAACTGCTTTGAAATCATGCAGCAGCCAGAAAACAAATCACGTAT  886

seq1  CTGAATCTATTTGCCCTTGTTTCGGGTCAAAGTCTGCAGATTATCCACAG  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGAATCTATTTGCCCTTGTTTCGGGTCAAAGTCTGCAGATTATCCACAG  936

seq1  GACAGTTCTCTTGCTTAAAGTTCACTGGGCTTTGCTGTGGGGCAGGCTTG  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACAGTTCTCTTGCTTAAAGTTCACTGGGCTTTGCTGTGGGGCAGGCTTG  986

seq1  GTTTTCTGGGAGAGAGCCAAGGTAGGCAAAGAGGAGTCCTTAACTTGGCT  1050
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTTCTGGGAGAGAGCCAAGGTAGGCAAAGAGGAGTCCTTAACTTGGCT  1036

seq1  TTCATAGCAGTGTGAGGTTCCCCAGGACATGACCTCCAAATTAACATCAA  1100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCATAGCAGTGTGAGGTTCCCCAGGACATGACCTCCAAATTAACATCAA  1086

seq1  CTTTGAGACCCAGTTTCTAAGAAGGGGACAGAATTC  1136
      ||||||||||||||||||||||||||||||||||||
seq2  CTTTGAGACCCAGTTTCTAAGAAGGGGACAGAATTC  1122

seq1: chr13_58967315_58968537
seq2: B6Ng01-134F04.g_68_1281

seq1  GAATTCAATCCTACATGCAGAAAAGCTCTCCACAAGCAGGCAGATGTTCA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAATCCTACATGCAGAAAAGCTCTCCACAAGCAGGCAGATGTTCA  50

seq1  TGGTGACAGTCGTGAGACCAGAAGCAAGCATGGGCTTCTTTTTCAGGGAG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTGACAGTCGTGAGACCAGAAGCAAGCATGGGCTTCTTTTTCAGGGAG  100

seq1  GCCCTGAAATGATCACTAAGAGCTGAAAAATAAACTAGTTTTTTGCCACA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCCTGAAATGATCACTAAGAGCTGAAAAATAAACTAGTTTTTTGCCACA  150

seq1  AGGCAGGGATTTGGACCTGTCATGACTAGCTTCTGACCAAATAGAGCAAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCAGGGATTTGGACCTGTCATGACTAGCTTCTGACCAAATAGAGCAAA  200

seq1  TTTGGAGAACTCTAAGGGCCAGATGTTTCTTAAGCGTGAGCACTCTGACT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGGAGAACTCTAAGGGCCAGATGTTTCTTAAGCGTGAGCACTCTGACT  250

seq1  GGGGTCAGATGGTCCCATCCACGTCAGCACACCAGCAATTCAATATGTCC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGGTCAGATGGTCCCATCCACGTCAGCACACCAGCAATTCAATATGTCC  300

seq1  GCCTTGGAGCAGACCGACAAGAACTCGATGATGACACTCTTATTTTGAAG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTTGGAGCAGACCGACAAGAACTCGATGATGACACTCTTATTTTGAAG  350

seq1  CTTGTGATTCTTTAGGCGTTGCAGAGAGTGTCTCTCTGGCCCACTCATCC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGTGATTCTTTAGGCGTTGCAGAGAGTGTCTCTCTGGCCCACTCATCC  400

seq1  AGGAAGACTGTCACAGCTCCAGGATGCTCATTCACACAGCAGTGGGAGTT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAAGACTGTCACAGCTCCAGGATGCTCATTCACACAGCAGTGGGAGTT  450

seq1  GGTGACTTCTGCTCCCTTATTCAGAAGCAGTTGTCTCCTATGCAAAAACT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTGACTTCTGCTCCCTTATTCAGAAGCAGTTGTCTCCTATGCAAAAACT  500

seq1  CGCGTCAGGGACAAACTATAAATATCGGAAGTGTTTTCCCACAGTTTCTC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGCGTCAGGGACAAACTATAAATATCGGAAGTGTTTTCCCACAGTTTCTC  550

seq1  CCAGTGCTGTTTTGTCAAAAGATTCATGATGTGGGGTGAACTGGCGCTCT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGTGCTGTTTTGTCAAAAGATTCATGATGTGGGGTGAACTGGCGCTCT  600

seq1  CTCTGCTGCACTTAGAAAGGCCCCAAAGTAGCAGATCTAGGGACGGAGTG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTGCTGCACTTAGAAAGGCCCCAAAGTAGCAGATCTAGGGACGGAGTG  650

seq1  TTCAAGTCAAGGAACACAGCGAGAGTAAATTTCTCCTGGAGTTCCACAGA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAAGTCAAGGAACACAGCGAGAGTAAATTTCTCCTGGAGTTCCACAGA  700

seq1  AGAGTAGAATGTGAAGCCCATGCTGTTTCAATCACCAGGACCTGTTCCTT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGTAGAATGTGAAGCCCATGCTGTTTCAATCACCAGGACCTGTTCCTT  750

seq1  GTCCTGGGGCTAAAACTACAGAGCCATAGATTCTTTCTTGCCTTGAGAAA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCCTGGGGCTAAAACTACAGAGCCATAGATTCTTTCTTGCCTTGAGAAA  800

seq1  CCAAGGAGAAGATGGTTTGGGCACAAGCCTTAGATAACCAGAGTAATTAA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAAGGAGAAGATGGTTTGGGCACAAGCCTTAGATAACCAGAGTAATTAA  850

seq1  GATTCATCCTTACAGTTCTTCTAATCTCCAGAGTACTAAGGTTAATTGGT  900
      ||||||||||||||||||||||||||||||||||||||||||| ||||||
seq2  GATTCATCCTTACAGTTCTTCTAATCTCCAGAGTACTAAGGTT-ATTGGT  899

seq1  TACACCTTCCTCGCTCATCCTT-GGGAAGACTCCATTCTAACAGGAAAGA  949
      |||||||||||||||||||||| |||||||||||||||||||||||||||
seq2  TACACCTTCCTCGCTCATCCTTGGGGAAGACTCCATTCTAACAGGAAAGA  949

seq1  AGAGACTCAAAGCTCTCAGCAAATTGGTGGCTGTCAGACTCTGGGCTTAG  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGACTCAAAGCTCTCAGCAAATTGGTGGCTGTCAGACTCTGGGCTTAG  999

seq1  TCTCCTCGTCCCCCTCCGAGGGGGCAGCCTGGCCAGCAGAGGC-TGCTGG  1048
      ||| ||||||||||||||| |||||||||| | |||||||||| |||| |
seq2  TCTTCTCGTCCCCCTCCGA-GGGGCAGCCTTGTCAGCAGAGGCTTGCT-G  1047

seq1  CCACATGTCAGAAGCATGCTGATCCAAAGCCAGGACTGTCCACTAGAGAA  1098
      |||  |||||| ||||||||||| ||||| ||||||||||||||||||||
seq2  CCAATTGTCAG-AGCATGCTGAT-CAAAG-CAGGACTGTCCACTAGAGAA  1094

seq1  GAAGGAATATGCAATTTGCTCTTCCTACTGCAAGGGTTTCTTTGGGATCG  1148
      ||||    |||| |||||||| || |||||  ||| ||||||||| ||||
seq2  GAAG---AATGC-ATTTGCTC-TCTTACTGGCAGGATTTCTTTGGAATCG  1139

seq1  TTTTAAAGATC-CTGGAATCTGCAAGATAACACTGAAGGAAAAGACTA-G  1196
      ||    |||||  || ||||||||  |||||  ||||||||||||||| |
seq2  TT----AGATCTTTGAAATCTGCAGAATAACCTTGAAGGAAAAGACTATG  1185

seq1  TT-TGAGGAGTATTTGA-GGGGTTGGAGG  1223
      || |||||||  || || |||||||||||
seq2  TTGTGAGGAGATTTAGAGGGGGTTGGAGG  1214