BAC Information

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BAC

Clone NameB6Ng01-135F02
Chromosome13 (Build37)
Map Location 100,219,100 - 100,367,662
singlet/doubletdoublet
Overlap geneMtap1b
Upstream geneLOC100039665, LOC100039854, LOC218501, Tmem174, Tmem171, LOC669675, Fcho2, Tnpo1, EG432798, LOC100039771, 1700024P04Rik, LOC100039967, LOC100039797, Zfp366, Ptcd2, Mrps27
Downstream geneCartpt, Mccc2, Bdp1, Serf1, Smn1, Naip2, Birc1-rs1, Naip5, Birc1c-ps1, Birc1f, EG667838, Naip1, Gtf2h2, Ocln, LOC667861, Marveld2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-135F02.bB6Ng01-135F02.g
ACCDH935388DH935389
length1,090853
definitionDH935388|Mus musculus domesticus DNA, BAC clone: B6Ng01-135F02, 5' end.DH935389|Mus musculus domesticus DNA, BAC clone: B6Ng01-135F02, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(100,366,591 - 100,367,662)(100,219,100 - 100,219,952)
sequence
gaattctcatagctataccatatgtgtaagtttttaaaacacaggtgaaa
taaaattcctttgtggtggattcacaaactaaagtagctataaaaatata
aatgaaaaccaaatggaaggtgctggaaaaatagctcagtggttaagagt
ctcattgctcagccgggcggtgatggccgcacacctttaatcccagcact
tgggaggcagaggcaggcagatttctgagtttgaggccagcctggcctgc
aaagtgagttccaggacagtcagggctacacagagaaaccctgtcataaa
gagaccaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaagagtctg
acttgctcttctagaagacctgggttcaattcccagctctcacagggtag
ctctctaatcctgttctagggcatctaatggcttctatttctggcctcct
gggcaccaggcatacacatggtactcagacatgcatgcaaaccacaaata
catatatagtaaaataaaataatttttaaaaacaggttgaacatggcctt
tggagaaaattgattagaatattcaatatgttttcctgtaattcgtattt
tagtaaaatggagtaaatacaaagtcaagggattgaaagcatttaaactg
atctttatcttttttttttcctgtctgttttgaagcctctaaaaaaatga
aagcaaacgaacaaaggagccatagcatgtggtctgcctttgtcctcagg
ctgccatgtcacttctcttagtgtacacacaccaggctcaagggagagag
aagggtcgagccaccctgagcctcggcgatggcctgaagattctgctgat
gggggttaaaccaactcttgagggaaaaaaaaaaatcagctggtttttct
tagtaatcttttcctgaaaattaaaaggagttagggggtgaagaaaaagg
aggaaaactattttcctgttgctatagtacagtacctccagaatctcctc
tggtagtctaggcctgtaggcatagggtgatttctttaataatataatgc
ttaacatttttcaggaacaatggtattttgctggggacta
gaattccacaggtccttgctaccctatctctaccttttctcctgccagtt
cccactgctgtcatgccttttcctatcccctcccaccagtctttgcgggc
tgaacactagagtgactgtttgatcaggcatctggtcttgtgaaccaaca
ctagaatctagactccattgtgaagatgaaagaacatcctagggttgggt
tgggagacgcttgggctaaagacagcctgagactgcttcattaaacataa
ggtctgatcactcaaggactgtgaacaccctgcatgttaaagcaggaaag
gaggcagggagacggaccttcatcccaacccctccatcacagaagggctg
tgaaggggaaaccctctcacctcaaacctttgtgctcaataaaactccac
cggtgaagtttagctaaatggataaaagcaagaatcaagagctgtgcttc
acagccatggaaatcacagccctgtggtcggtaattacctacaggtctct
aggcagcgtttaataacatcttttatttaaaaccataaccaggcctcctt
actctaggaacccacataatatgcagggcagatgtgtggtcagtgtgaag
agaaacagagccgggatgggaggaattaactctgggaggaaagcaagacc
tgccttggcaggaactgtggccaaacttccctcacagggtagaggtgata
caacaggagaggaatctgtgaagggcccaaggcgattggtcccctgtgag
cctctgccctacctgtgtttctaaacaggaaaaccagagtctgggtgaat
atagtttatcaggaacagagcttctgagaggccacaattagcagattccc
acc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr13_100366591_100367662
seq2: B6Ng01-135F02.b_43_1132 (reverse)

seq1  TAGTCCCCAGC-AAATACCA-TGGTCTTGAAAAATGTTAGCCATTATTAT  48
      ||||||||||| |||||||| || || ||||||||||||  ||||| |||
seq2  TAGTCCCCAGCAAAATACCATTGTTCCTGAAAAATGTTAAGCATTA-TAT  49

seq1  TATATAAAGAA--TACACTATGCCTACAGGCCTAGACTA-CAGA-GAGAT  94
      ||| |||||||   || |||||||||||||||||||||| |||| |||||
seq2  TAT-TAAAGAAATCACCCTATGCCTACAGGCCTAGACTACCAGAGGAGAT  98

seq1  TTCTTGGAGGTAACTGTAACTA-AGCAACAGG-AAATAGTTTTCCTCCTT  142
      |   ||||||| ||||| |||| ||||||||| |||||||||||||||||
seq2  T--CTGGAGGT-ACTGT-ACTATAGCAACAGGAAAATAGTTTTCCTCCTT  144

seq1  TTTCTTCA-CCCCTAACTCCTCTTAATTTTCAGGAAAAGATTACTAAG-A  190
      |||||||| |||||||||||| |||||||||||||||||||||||||| |
seq2  TTTCTTCACCCCCTAACTCCTTTTAATTTTCAGGAAAAGATTACTAAGAA  194

seq1  AAACCAGCTGA-TTTTTTTTTTCCCTCAAGAGTTGGTTTAACCCCCATCA  239
      ||||||||||| ||||||||||||||||||||||||||||||||||||||
seq2  AAACCAGCTGATTTTTTTTTTTCCCTCAAGAGTTGGTTTAACCCCCATCA  244

seq1  GCAGAATCTTCAGGCCATCGCCGA-GCTCAGGGTGGCTCGACCCTTCTCT  288
      |||||||||||||||||||||||| |||||||||||||||||||||||||
seq2  GCAGAATCTTCAGGCCATCGCCGAGGCTCAGGGTGGCTCGACCCTTCTCT  294

seq1  CTCCCTTGAGCCTGGTGTGTGTACACTAAGAGAAGTGACATGGCAGCCTG  338
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCCTTGAGCCTGGTGTGTGTACACTAAGAGAAGTGACATGGCAGCCTG  344

seq1  AGGACAAAGGCAGACCACATGCTATGGCTCCTTTGTTCGTTTGCTTTCAT  388
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGACAAAGGCAGACCACATGCTATGGCTCCTTTGTTCGTTTGCTTTCAT  394

seq1  TTTTTTAGAGGCTTCAAAACAGACAGGAAAAAAAAAAGATAAAGATCAGT  438
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTTAGAGGCTTCAAAACAGACAGGAAAAAAAAAAGATAAAGATCAGT  444

seq1  TTAAATGCTTTCAATCCCTTGACTTTGTATTTACTCCATTTTACTAAAAT  488
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAATGCTTTCAATCCCTTGACTTTGTATTTACTCCATTTTACTAAAAT  494

seq1  ACGAATTACAGGAAAACATATTGAATATTCTAATCAATTTTCTCCAAAGG  538
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACGAATTACAGGAAAACATATTGAATATTCTAATCAATTTTCTCCAAAGG  544

seq1  CCATGTTCAACCTGTTTTTAAAAATTATTTTATTTTACTATATATGTATT  588
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATGTTCAACCTGTTTTTAAAAATTATTTTATTTTACTATATATGTATT  594

seq1  TGTGGTTTGCATGCATGTCTGAGTACCATGTGTATGCCTGGTGCCCAGGA  638
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGGTTTGCATGCATGTCTGAGTACCATGTGTATGCCTGGTGCCCAGGA  644

seq1  GGCCAGAAATAGAAGCCATTAGATGCCCTAGAACAGGATTAGAGAGCTAC  688
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCCAGAAATAGAAGCCATTAGATGCCCTAGAACAGGATTAGAGAGCTAC  694

seq1  CCTGTGAGAGCTGGGAATTGAACCCAGGTCTTCTAGAAGAGCAAGTCAGA  738
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGTGAGAGCTGGGAATTGAACCCAGGTCTTCTAGAAGAGCAAGTCAGA  744

seq1  CTC------------TTTTTTTTTTTTTTTTTTTTTTTTTGGTCTCTTTA  776
      |||            |||||||||||||||||||||||||||||||||||
seq2  CTCTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTGGTCTCTTTA  794

seq1  TGACAGGGTTTCTCTGTGTAGCCCTGACTGTCCTGGAACTCACTTTGCAG  826
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACAGGGTTTCTCTGTGTAGCCCTGACTGTCCTGGAACTCACTTTGCAG  844

seq1  GCCAGGCTGGCCTCAAACTCAGAAATCTGCCTGCCTCTGCCTCCCAAGTG  876
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCAGGCTGGCCTCAAACTCAGAAATCTGCCTGCCTCTGCCTCCCAAGTG  894

seq1  CTGGGATTAAAGGTGTGCGGCCATCACCGCCCGGCTGAGCAATGAGACTC  926
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGGATTAAAGGTGTGCGGCCATCACCGCCCGGCTGAGCAATGAGACTC  944

seq1  TTAACCACTGAGCTATTTTTCCAGCACCTTCCATTTGGTTTTCATTTATA  976
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAACCACTGAGCTATTTTTCCAGCACCTTCCATTTGGTTTTCATTTATA  994

seq1  TTTTTATAGCTACTTTAGTTTGTGAATCCACCACAAAGGAATTTTATTTC  1026
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTATAGCTACTTTAGTTTGTGAATCCACCACAAAGGAATTTTATTTC  1044

seq1  ACCTGTGTTTTAAAAACTTACACATATGGTATAGCTATGAGAATTC  1072
      ||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTGTGTTTTAAAAACTTACACATATGGTATAGCTATGAGAATTC  1090

seq1: chr13_100219100_100219952
seq2: B6Ng01-135F02.g_69_921

seq1  GAATTCCACAGGTCCTTGCTACCCTATCTCTACCTTTTCTCCTGCCAGTT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCACAGGTCCTTGCTACCCTATCTCTACCTTTTCTCCTGCCAGTT  50

seq1  CCCACTGCTGTCATGCCTTTTCCTATCCCCTCCCACCAGTCTTTGCGGGC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCACTGCTGTCATGCCTTTTCCTATCCCCTCCCACCAGTCTTTGCGGGC  100

seq1  TGAACACTAGAGTGACTGTTTGATCAGGCATCTGGTCTTGTGAACCAACA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAACACTAGAGTGACTGTTTGATCAGGCATCTGGTCTTGTGAACCAACA  150

seq1  CTAGAATCTAGACTCCATTGTGAAGATGAAAGAACATCCTAGGGTTGGGT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAGAATCTAGACTCCATTGTGAAGATGAAAGAACATCCTAGGGTTGGGT  200

seq1  TGGGAGACGCTTGGGCTAAAGACAGCCTGAGACTGCTTCATTAAACATAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGAGACGCTTGGGCTAAAGACAGCCTGAGACTGCTTCATTAAACATAA  250

seq1  GGTCTGATCACTCAAGGACTGTGAACACCCTGCATGTTAAAGCAGGAAAG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTCTGATCACTCAAGGACTGTGAACACCCTGCATGTTAAAGCAGGAAAG  300

seq1  GAGGCAGGGAGACGGACCTTCATCCCAACCCCTCCATCACAGAAGGGCTG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGCAGGGAGACGGACCTTCATCCCAACCCCTCCATCACAGAAGGGCTG  350

seq1  TGAAGGGGAAACCCTCTCACCTCAAACCTTTGTGCTCAATAAAACTCCAC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAGGGGAAACCCTCTCACCTCAAACCTTTGTGCTCAATAAAACTCCAC  400

seq1  CGGTGAAGTTTAGCTAAATGGATAAAAGCAAGAATCAAGAGCTGTGCTTC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGGTGAAGTTTAGCTAAATGGATAAAAGCAAGAATCAAGAGCTGTGCTTC  450

seq1  ACAGCCATGGAAATCACAGCCCTGTGGTCGGTAATTACCTACAGGTCTCT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGCCATGGAAATCACAGCCCTGTGGTCGGTAATTACCTACAGGTCTCT  500

seq1  AGGCAGCGTTTAATAACATCTTTTATTTAAAACCATAACCAGGCCTCCTT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCAGCGTTTAATAACATCTTTTATTTAAAACCATAACCAGGCCTCCTT  550

seq1  ACTCTAGGAACCCACATAATATGCAGGGCAGATGTGTGGTCAGTGTGAAG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCTAGGAACCCACATAATATGCAGGGCAGATGTGTGGTCAGTGTGAAG  600

seq1  AGAAACAGAGCCGGGATGGGAGGAATTAACTCTGGGAGGAAAGCAAGACC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAACAGAGCCGGGATGGGAGGAATTAACTCTGGGAGGAAAGCAAGACC  650

seq1  TGCCTTGGCAGGAACTGTGGCCAAACTTCCCTCACAGGGTAGAGGTGATA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCTTGGCAGGAACTGTGGCCAAACTTCCCTCACAGGGTAGAGGTGATA  700

seq1  CAACAGGAGAGGAATCTGTGAAGGGCCCAAGGCGATTGGTCCCCTGTGAG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAACAGGAGAGGAATCTGTGAAGGGCCCAAGGCGATTGGTCCCCTGTGAG  750

seq1  CCTCTGCCCTACCTGTGTTTCTAAACAGGAAAACCAGAGTCTGGGTGAAT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCTGCCCTACCTGTGTTTCTAAACAGGAAAACCAGAGTCTGGGTGAAT  800

seq1  ATAGTTTATCAGGAACAGAGCTTCTGAGAGGCCACAATTAGCAGATTCCC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGTTTATCAGGAACAGAGCTTCTGAGAGGCCACAATTAGCAGATTCCC  850

seq1  ACC  853
      |||
seq2  ACC  853