BAC Information

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BAC

Clone NameB6Ng01-135G07
Chromosome10 (Build37)13 (Build37)
Map Location 104,053,978 - 104,054,691109,316,797 - 109,317,865
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneEG627488, EG667692, EG667695, LOC100043292
Downstream geneLOC100042383, Tmtc2, EG627573
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-135G07.bB6Ng01-135G07.g
ACCDH935442DH935443
length1,1281,065
definitionDH935442|Mus musculus domesticus DNA, BAC clone: B6Ng01-135G07, 5' end.DH935443|Mus musculus domesticus DNA, BAC clone: B6Ng01-135G07, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(104,053,978 - 104,054,691)(109,316,797 - 109,317,865)
sequence
gaattcattaaaaaattatatcacctgggattcacagccaattcctatat
tattttaatgccaagccaattacatctcagagcatacaatctgatatacc
tttgaacttaaaatttgtcttagactcctggctcttgacttctcggtgct
gctgagatgagaacagaaacatctggtaaacacaaatatcagaagatgag
agcgtttggattgcttagcttaccacatatgtgcatagagaaggatatct
agcatatacaaaaatatatcccctcctatctaaaaacatccagtgggaaa
aaagacagcattttcaacaaatggtgctggcacaactggcagctatcctg
tagaagaatgcgaattgatccattcttatctccttgaacaaagctcaagt
ctaagtggatcaaagacctccacataagaccaaagacactgaaattaata
ggagaaagtagggtaaagcctcaaagatatgggtacaggggaaaaattcc
taaacagaacagcaatggcttgtgctgtaagatcaagaattgacaaatgg
gacctcataaaattgcaaagcttctgtaaggcaaaagacactatcaataa
gacaaaaaggtcaccaacagattgggaaaggatttttaccaatcctaaat
ctgataggggactaatatccaatatatacaaagagctcaagaagctggac
tccagaaattcaaataaccccattaaaaactgggattcagagctaaacaa
agaattcacaactgaggaatatcgaatgactgagaagcacctgaaaaaat
gttcaacatccttaatcatcagggaaatgcaaatcaaaacaaccttgaca
ttccacctcacaccagtcagaatgactaagatcaaaaatccaggtgacag
cagatgctggcaaggatgtggagaaagaggaacactcctccattgttggt
gggactgcaagcttgtacaccactctggaagtcagtctggaggttcctca
gaaattgacatactactactggaagatccagcaaatctcctcctggcaat
acccagaagtccaactggtaataagaacccatgctcccactatgttcata
gcagcctatttttaattgccagaagctg
gaattctcattgtctgccttttctcggttgctaacaccctggaatgcgag
cctgttgagtggctttcataccatttcaatcatgaataatacagttgtgt
aaaaatagacaaagtgtaggtctcttagaagcctacaatttgctcggcct
aactgatgttaaacaaatgcttgaatatgtaaattaatgtctggcagcag
tacctggggtggagaaaatgaagccgtgtatagatggactagtagtggag
ttgaatggagaacgggtactcagggaaggcttctgaagtgaggagcaagc
ggtgaggagctggacaaagtgttttcagcagaggaattagcaggtgcaaa
ggctgctgggacttgcaatgggaagaaaggtaagaaacgtggcgagcaga
caaccagggtctagctcatgcagcgcctttttgaacagtaacatctttgc
gcttagactctgagttcagtggcaatctgtaggtccttttagatatgatc
tgatgtctggctgccgtgtgaataggctactgtagggagtcaagctttga
atcctgtgatagttgagttggagaaagatgctgaggggcccttgggcgag
ttggagtggagtcagcgtgagaggagggcagatcctttaagatgtgtttc
atttaaataatctaaatttagagagcatgatcagctctgcaaagctgagc
atatggagagtgtttcccacagcagacccagcatacatccggtgacatct
gagttaattttaggtagtgtgtcacatgaatggatgtctgtctacatttt
taacggctacttaggaatttgcggctcattaggaaactcacatgtaaatc
ttgtggttacagtttttatttttagtaagtatgaagtattaagtctacag
taaaggtagtaaaaattagacacattggctatctggagtggaagctgcta
ctgggactgtgataaggctcactttctaggagagcattgactcaggtggt
tttaccatgtgagaccattagaatagactttacagtatttattgattcgt
aggctccacacttag
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr10_104053978_104054691
seq2: B6Ng01-135G07.b_473_1175 (reverse)

seq1  CAGCTCCTGGCTATTATAAATAAGGCTGCTATGAATATAGT-GGAGCATG  49
      ||||| ||||| |||| |||| ||||||||||||| ||||| ||||||||
seq2  CAGCTTCTGGCAATTAAAAAT-AGGCTGCTATGAACATAGTGGGAGCATG  49

seq1  TGTCCTTCTTACCGGTTGGGGCATCTTCTGGATATATGCCCAGAAGAGGT  99
       || ||| ||||| |||||     ||||||| ||| ||||  || ||| |
seq2  GGTTCTTATTACCAGTTGG----ACTTCTGGGTAT-TGCCAGGAGGAGAT  94

seq1  ATTGCTGGATCCTCCGGTAGTACTATGTCCAATTTTCTGACGAACCGCCA  149
       |||||||||| ||| |||||| ||||||  | ||||||| ||||| |||
seq2  -TTGCTGGATCTTCCAGTAGTAGTATGTC--AATTTCTGAGGAACCTCCA  141

seq1  GACGGATTTCCAGAGTGGTTGTACAAGCCTGCAATCCCACCAACAATGGA  199
      ||| || ||||||||||| ||||||||| |||| ||||||||||||||||
seq2  GACTGACTTCCAGAGTGG-TGTACAAGCTTGCAGTCCCACCAACAATGGA  190

seq1  GGAGTGTTCCTCTTTCTCCACATCCTCGCCAGCATCTGCTGTCACCTGAA  249
      |||||||||||||||||||||||||| ||||||||||||||||||||| |
seq2  GGAGTGTTCCTCTTTCTCCACATCCTTGCCAGCATCTGCTGTCACCTGGA  240

seq1  TTTTTGATCTTAGCCATTCTGACTGGTGTGAGGTGGAATCTCAGGGTTGT  299
      ||||||||||||| ||||||||||||||||||||||||| ||| ||||||
seq2  TTTTTGATCTTAGTCATTCTGACTGGTGTGAGGTGGAATGTCAAGGTTGT  290

seq1  TTTGATTTGCATTTCCCTGATGATTAAGGATGTTGAACATTTTTTCAGGT  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGATTTGCATTTCCCTGATGATTAAGGATGTTGAACATTTTTTCAGGT  340

seq1  GCTTCTCTGCCATTCGGTATTCCTCAGGTGAGAATTCTTTGTTCAGTTCT  399
      ||||||| | |||||| |||||||||| || |||||||||||| || |||
seq2  GCTTCTCAGTCATTCGATATTCCTCAGTTGTGAATTCTTTGTTTAGCTCT  390

seq1  GAGCCCCATTTTTTAATAGGGTTATTTGATTTTCTGAAGTCCACCTTCTT  449
      ||  |||| |||||||| ||||||||||| |||||| |||||| ||||||
seq2  GAATCCCAGTTTTTAATGGGGTTATTTGAATTTCTGGAGTCCAGCTTCTT  440

seq1  GAGTTCTTTATATATGTTGGATATTAGTCCCCTATCTGAATTAGGATAGG  499
      ||| ||||| ||||| |||||||||||||||||||| || ||||||| ||
seq2  GAGCTCTTTGTATATATTGGATATTAGTCCCCTATCAGATTTAGGATTGG  490

seq1  TAAAGATCCTTTCTCAATCTGTTGGTGGTCTTTTTGTCTTATTGACGGTG  549
      |||| |||||||| |||||||||||||  ||||||||||||||||  |||
seq2  TAAAAATCCTTTCCCAATCTGTTGGTGACCTTTTTGTCTTATTGATAGTG  540

seq1  TCTTTTGCCTTGCAGAAGCTTTGCAATTTTATGAGGTCCCATTTATCAAC  599
      ||||||||||| |||||||||||||||||||||||||||||||| |||| 
seq2  TCTTTTGCCTTACAGAAGCTTTGCAATTTTATGAGGTCCCATTTGTCAAT  590

seq1  TCTCTATCTTACAGCACAAGCCATTGCTGTTCTATTCAGGAATTTTTCCC  649
      |||  |||||||||||||||||||||||||||| || |||||||||||||
seq2  TCTTGATCTTACAGCACAAGCCATTGCTGTTCTGTTTAGGAATTTTTCCC  640

seq1  CTGTACCCATATCTTCGAGGCTTTTCCCTACTTTTTCCTCTATAAGTTTC  699
      ||||||||||||||| |||||||| ||||||||| ||  |||| | ||||
seq2  CTGTACCCATATCTTTGAGGCTTTACCCTACTTTCTC--CTATTAATTTC  688

seq1  AGTGTCTCTGGTTTT  714
      ||||||| |||| ||
seq2  AGTGTCTTTGGTCTT  703

seq1: chr13_109316797_109317865
seq2: B6Ng01-135G07.g_66_1130

seq1  GAATTCTCATTGTCTGCCTTTTCTCGGTTGCTAACACCCTGGAATGCGAG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTCATTGTCTGCCTTTTCTCGGTTGCTAACACCCTGGAATGCGAG  50

seq1  CCTGTTGAGTGGCTTTCATACCATTTCAATCATGAATAATACAGTTGTGT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGTTGAGTGGCTTTCATACCATTTCAATCATGAATAATACAGTTGTGT  100

seq1  AAAAATAGACAAAGTGTAGGTCTCTTAGAAGCCTACAATTTGCTCGGCCT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAATAGACAAAGTGTAGGTCTCTTAGAAGCCTACAATTTGCTCGGCCT  150

seq1  AACTGATGTTAAACAAATGCTTGAATATGTAAATTAATGTCTGGCAGCAG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTGATGTTAAACAAATGCTTGAATATGTAAATTAATGTCTGGCAGCAG  200

seq1  TACCTGGGGTGGAGAAAATGAAGCCGTGTATAGATGGACTAGTAGTGGAG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACCTGGGGTGGAGAAAATGAAGCCGTGTATAGATGGACTAGTAGTGGAG  250

seq1  TTGAATGGAGAACGGGTACTCAGGGAAGGCTTCTGAAGTGAGGAGCAAGC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGAATGGAGAACGGGTACTCAGGGAAGGCTTCTGAAGTGAGGAGCAAGC  300

seq1  GGTGAGGAGCTGGACAAAGTGTTTTCAGCAGAGGAATTAGCAGGTGCAAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTGAGGAGCTGGACAAAGTGTTTTCAGCAGAGGAATTAGCAGGTGCAAA  350

seq1  GGCTGCTGGGACTTGCAATGGGAAGAAAGGTAAGAAACGTGGCGAGCAGA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTGCTGGGACTTGCAATGGGAAGAAAGGTAAGAAACGTGGCGAGCAGA  400

seq1  CAACCAGGGTCTAGCTCATGCAGCGCCTTTTTGAACAGTAACATCTTTGC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAACCAGGGTCTAGCTCATGCAGCGCCTTTTTGAACAGTAACATCTTTGC  450

seq1  GCTTAGACTCTGAGTTCAGTGGCAATCTGTAGGTCCTTTTAGATATGATC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTAGACTCTGAGTTCAGTGGCAATCTGTAGGTCCTTTTAGATATGATC  500

seq1  TGATGTCTGGCTGCCGTGTGAATAGGCTACTGTAGGGAGTCAAGCTTTGA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATGTCTGGCTGCCGTGTGAATAGGCTACTGTAGGGAGTCAAGCTTTGA  550

seq1  ATCCTGTGATAGTTGAGTTGGAGAAAGATGCTGAGGGGCCCTTGGGCGAG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCCTGTGATAGTTGAGTTGGAGAAAGATGCTGAGGGGCCCTTGGGCGAG  600

seq1  TTGGAGTGGAGTCAGCGTGAGAGGAGGGCAGATCCTTTAAGATGTGTTTC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGAGTGGAGTCAGCGTGAGAGGAGGGCAGATCCTTTAAGATGTGTTTC  650

seq1  ATTTAAATAATCTAAATTTAGAGAGCATGATCAGCTCTGCAAAGCTGAGC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTAAATAATCTAAATTTAGAGAGCATGATCAGCTCTGCAAAGCTGAGC  700

seq1  ATATGGAGAGTGTTTCCCACAGCAGACCCAGCATACATCCGGTGACATCT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATGGAGAGTGTTTCCCACAGCAGACCCAGCATACATCCGGTGACATCT  750

seq1  GAGTTAATTTTAGGTAGTGTGTCACATGAATGGATGTCTGTCTACA-TTT  799
      |||||||||||||||||||||||||||||||||||||||||||||| |||
seq2  GAGTTAATTTTAGGTAGTGTGTCACATGAATGGATGTCTGTCTACATTTT  800

seq1  TAACGGCTACTTAGGAATTTGCGGCTCATTAGGAAACTCACATGTAAATC  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAACGGCTACTTAGGAATTTGCGGCTCATTAGGAAACTCACATGTAAATC  850

seq1  TTGTGGTTACAGTTTTTATTTTTAGTAAGTATGAAGTATTAAGTCTACAG  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTGGTTACAGTTTTTATTTTTAGTAAGTATGAAGTATTAAGTCTACAG  900

seq1  TAAAGGTAGTAAAAATTAGACACATTGGCTATCTGGAGTGG-AGCTGCTA  948
      ||||||||||||||||||||||||||||||||||||||||| ||||||||
seq2  TAAAGGTAGTAAAAATTAGACACATTGGCTATCTGGAGTGGAAGCTGCTA  950

seq1  CTGGGACTGTTGATAAGGCTCACTTTCTAGGGAGAGCAATGACTCAGGTG  998
      ||||||||| ||||||||||||||||||| |||||||| |||||||||||
seq2  CTGGGACTG-TGATAAGGCTCACTTTCTA-GGAGAGCATTGACTCAGGTG  998

seq1  GTTTTATACCATGTGAGGACCATTAGAATAGACTTTATCAGTTATTTATT  1048
      ||||  |||||||||| |||||||||||||||||||| ||| ||||||||
seq2  GTTT--TACCATGTGA-GACCATTAGAATAGACTTTA-CAG-TATTTATT  1043

seq1  GAATCGTAGGCTCCACA-TTAG  1069
      || |||||||||||||| ||||
seq2  GATTCGTAGGCTCCACACTTAG  1065