BAC Information

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BAC

Clone NameB6Ng01-135J19
Chromosome13 (Build37)13 (Build37)
Map Location 67,685,775 - 67,685,877117,501,412 - 117,502,554
singlet/doubletsingletsinglet
Overlap geneZfp87
Upstream geneMzf6d, Vmn2r-ps106, LOC666027, LOC100042492, LOC100041947, EG382769, LOC666052, EG432768, LOC666061, Uqcrb, Mterfd1, Ptdss1, Zfp712, Zfp708, Zfp759, Rsl1, LOC674699, Zfp455, Zfp458, Zfp457, A230042K10Rik, E130120F12Rik, Zfp456, 2810487A22Rik, Zfp459, C330011K17Rik, LOC666098, 9630025I21Rik, Zfp817, Zfp748
Downstream geneA530054K11Rik, LOC328277, 3830402I07Rik, EG666137, Zfp85-rs1, LOC674597, Zfp273, BC048507, LOC666185, LOC100042687, LOC100042692, LOC674779, LOC677603, LOC100042124, LOC666222, AA414992, LOC666238, EG666245, EG666272, LOC100042223
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-135J19.bB6Ng01-135J19.g
ACCDH935605DH935606
length9951,122
definitionDH935605|Mus musculus domesticus DNA, BAC clone: B6Ng01-135J19, 5' end.DH935606|Mus musculus domesticus DNA, BAC clone: B6Ng01-135J19, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(67,685,775 - 67,685,877)(117,501,412 - 117,502,554)
sequence
gaattctgtttatctctgtatgccatttttaattgggttatatagtttgt
tggtgtctaatttcctgagttctttgtgtattttggacattagccctgtc
agaaatagggttggtcaagatattttcacattctgttggctagtgttttg
tcctactgatggtgtactgagccttgcaatacctttcagtttcatgaggt
cccacttatcaattgttgatcttagtgcctgagctattggtgttctattt
gggaatttatctcctgtaccaatctattcaaggcagatttctattcgatt
tagtgtgtacagtatttattgttattgttattattattattttactttta
tttttttataatctattctttgccccccttctattctgccctcccacagt
tcctcatcccattccttctcccccatgtctccaagagtatgctcccctac
ttcattccccaacaggcctccccattccctggggcctcaagtctctcagg
ggagcatgttctcccactgagaccagactagctagttttctgctatatgt
gtgtgtgtgtttggggggagcagcaagtatatgctgccttgtttataact
cagtgtctgagagatctcagaggtctgggttagttaagactgctggtctt
cctatggggtcaccctcctcctcaacttcttccagtctttccctacttca
accaccaggatccccaacttcagtccaatggttggatgtaaatatctgca
tctgttttagtcagctgcttgttgggcctctcaggggatggtttgatcta
cttgcacttgaggtttgtacagggtaataaatatctaactctttgccttc
ttctacagacaagcatgcagttagagcagcaccatttgctgaaaatgctt
tcctttttccattgtattgttttgtatgctttgtcaaaatcaaatgtcca
taggcatgtaggtttacttctaggtcttcatctatttcatatcaa
gaattccagttgtatattcctgaaagatgttgacttttgtttttaacaaa
atcttgcaaagaaaaaaaaaaaagacacctgtccttctagtaaattgagg
gaaggcaggggataattagggacaaatgatcttcagagtgaaaccatggc
tttacaagttcaagtcttggctaataaaattctcagagtgataccaggaa
tcagacaaatacccagaaatgtgtatttcccatcattgctgttatttgta
tgccctatctttcccccagctcctttatgactcaaatccttgtgtaaatt
accataaaaggaaagcactttatttatagagggttctcttttgcctaaat
attccagatgagaatttttttaagtgacaatgaaaactaacatttttaaa
aatgttgttaaggatattgtaaaaaccttaaacatcatccacacttcaaa
gcaaagttcaaaaatctgggttgcatgacttgtctcttcgggaaatgaat
tcaacacctcataaaaatatcttcaggcttctcagtaaagccatgtttgt
tctttgtgtgtttggagtttgtactttctctgagtgcagaagatgtgtta
gcaagctaactgggattatgccctttacagaaaacgaaggctcctttggg
aaaactatttgtccaaaaggagtcaatggctttctggcttacagtccact
gcttcttctagcccttctctcagtagtagctttgtgttaaggtcgttgtt
ttattgatgttgaagttcctcacaacataatttacccccaaggaaagaag
cagcaaagcaggaaattattctctgaagtctccagttgtttcaagtcaca
gcctgatactaaagcgcaaattcagttttccatacattaatatcatcttt
gcaacatctccaagaacctaaagagaaatagcatcctgagggttttctac
agggaataatatctatcaataagatacataaaaataagtgttaaatcgac
gtctttttaaaatgggctctagtctgatagtacttgaagtcagaaagttt
actacgctctccactctccctacctgaggtctattttgaagagatgactt
tcgatctttagttggatgaatt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr13_67685775_67685877
seq2: B6Ng01-135J19.b_68_318 (reverse)

seq1  ATTGGTACAGG-GGGAAATTTCCTGATTG---------TGCTCAGGCTCT  40
      ||||||||||| |  ||||| ||  || |          |||||||| ||
seq2  ATTGGTACAGGAGATAAATTCCCAAATAGAACACCAATAGCTCAGGCACT  50

seq1  AAGATCAACAATTGA---------------CAAACTCA------------  63
      |||||||||||||||                ||||| |            
seq2  AAGATCAACAATTGATAAGTGGGACCTCATGAAACTGAAAGGTATTGCAA  100

seq1  -----AGTTAAC--------GTACAAAACTCCAGATAACCCAAT-TAAAA  99
           |||  ||        | ||||||| | ||  |||  ||| | |||
seq2  GGCTCAGTACACCATCAGTAGGACAAAACACTAGCCAACAGAATGTGAAA  150

seq1  ATGG----------------------------------------------  103
      ||                                                
seq2  AT--ATCTTGACCAACCCTATTTCTGACAGGGCTAATGTCCAAAATACAC  198

seq1  --------------------------------------------------  103
                                                        
seq2  AAAGAACTCAGGAAATTAGACACCAACAAACTATATAACCCAATTAAAAA  248

seq1  ---  103
         
seq2  TGG  251

seq1: chr13_117501412_117502554
seq2: B6Ng01-135J19.g_66_1187 (reverse)

seq1  AATTCA---GACTATAAGATCGAAAGTCATCTTCTCTCAAAATATGTACC  47
      ||||||    |||| |||||||||||||||| ||| ||||||||   |||
seq2  AATTCATCCAACTA-AAGATCGAAAGTCATC-TCT-TCAAAATA--GACC  45

seq1  TCAAGGTAGGGAGAGTGGAGAGCCCGTAGTTAAAATTTTTCTGACTTTTC  97
      || |||||||||||||||||||  ||||||   ||  ||||||||||   
seq2  TC-AGGTAGGGAGAGTGGAGAG--CGTAGT---AAACTTTCTGACTT---  86

seq1  CAAAGTACTATCAGACTAGAGCCCAATTTTTAAAAAGACGTCGATTTAAC  147
        |||||||||||||||||||||||  |||||||||||||||||||||||
seq2  -CAAGTACTATCAGACTAGAGCCCA--TTTTAAAAAGACGTCGATTTAAC  133

seq1  ACTTAATTTTTTAATGTATCTTATTTGATAGATATTATTTCCCTGTAG-A  196
      |||||   |||| |||||||||| ||||||||||||| |||||||||| |
seq2  ACTTA---TTTTTATGTATCTTA-TTGATAGATATTA-TTCCCTGTAGAA  178

seq1  AACCCTCAGGATTGCTATTTCTCTTTAGGTTCCTTGGAGATGTTGCAAAG  246
      ||||||||||| ||||||||||||||||||| ||||||||||||||||||
seq2  AACCCTCAGGA-TGCTATTTCTCTTTAGGTT-CTTGGAGATGTTGCAAAG  226

seq1  ATGATATTAATGTATGGAAAACTGAATTTTGCGCTTTAGTATCAGGCTGT  296
      |||||||||||||||||||||||||| |||||||||||||||||||||||
seq2  ATGATATTAATGTATGGAAAACTGAA-TTTGCGCTTTAGTATCAGGCTGT  275

seq1  GACTTGAAACAACTGGAGACTTCAGAGAATAATTTCCTGCTTTGCTGCTT  346
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACTTGAAACAACTGGAGACTTCAGAGAATAATTTCCTGCTTTGCTGCTT  325

seq1  CTTTCCTTGGGGGTAAATTATGTTGTGAGGAACTTCAACATCAATAAAAC  396
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTCCTTGGGGGTAAATTATGTTGTGAGGAACTTCAACATCAATAAAAC  375

seq1  AACGACCTTAACACAAAGCTACTACTGAGAGAAGGGCTAGAAGAAGCAGT  446
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACGACCTTAACACAAAGCTACTACTGAGAGAAGGGCTAGAAGAAGCAGT  425

seq1  GGACTGTAAGCCAGAAAGCCATTGACTCCTTTTGGACAAATAGTTTTCCC  496
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGACTGTAAGCCAGAAAGCCATTGACTCCTTTTGGACAAATAGTTTTCCC  475

seq1  AAAGGAGCCTTCGTTTTCTGTAAAGGGCATAATCCCAGTTAGCTTGCTAA  546
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGGAGCCTTCGTTTTCTGTAAAGGGCATAATCCCAGTTAGCTTGCTAA  525

seq1  CACATCTTCTGCACTCAGAGAAAGTACAAACTCCAAACACACAAAGAACA  596
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACATCTTCTGCACTCAGAGAAAGTACAAACTCCAAACACACAAAGAACA  575

seq1  AACATGGCTTTACTGAGAAGCCTGAAGATATTTTTATGAGGTGTTGAATT  646
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACATGGCTTTACTGAGAAGCCTGAAGATATTTTTATGAGGTGTTGAATT  625

seq1  CATTTCCCGAAGAGACAAGTCATGCAACCCAGATTTTTGAACTTTGCTTT  696
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTTCCCGAAGAGACAAGTCATGCAACCCAGATTTTTGAACTTTGCTTT  675

seq1  GAAGTGTGGATGATGTTTAAGGTTTTTACAATATCCTTAACAACATTTTT  746
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGTGTGGATGATGTTTAAGGTTTTTACAATATCCTTAACAACATTTTT  725

seq1  AAAAATGTTAGTTTTCATTGTCACTTAAAAAAATTCTCATCTGGAATATT  796
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAATGTTAGTTTTCATTGTCACTTAAAAAAATTCTCATCTGGAATATT  775

seq1  TAGGCAAAAGAGAACCCTCTATAAATAAAGTGCTTTCCTTTTATGGTAAT  846
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGGCAAAAGAGAACCCTCTATAAATAAAGTGCTTTCCTTTTATGGTAAT  825

seq1  TTACACAAGGATTTGAGTCATAAAGGAGCTGGGGGAAAGATAGGGCATAC  896
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACACAAGGATTTGAGTCATAAAGGAGCTGGGGGAAAGATAGGGCATAC  875

seq1  AAATAACAGCAATGATGGGAAATACACATTTCTGGGTATTTGTCTGATTC  946
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATAACAGCAATGATGGGAAATACACATTTCTGGGTATTTGTCTGATTC  925

seq1  CTGGTATCACTCTGAGAATTTTATTAGCCAAGACTTGAACTTGTAAAGCC  996
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGTATCACTCTGAGAATTTTATTAGCCAAGACTTGAACTTGTAAAGCC  975

seq1  ATGGTTTCACTCTGAAGATCATTTGTCCCTAATTATCCCCTGCCTTCCCT  1046
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGTTTCACTCTGAAGATCATTTGTCCCTAATTATCCCCTGCCTTCCCT  1025

seq1  CAATTTACTAGAAGGACAGGTGTCTTTTTTTTTTTTCTTTGCAAGATTTT  1096
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATTTACTAGAAGGACAGGTGTCTTTTTTTTTTTTCTTTGCAAGATTTT  1075

seq1  GTTAAAAACAAAAGTCAACATCTTTCAGGAATATACAACTGGAATTC  1143
      |||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTAAAAACAAAAGTCAACATCTTTCAGGAATATACAACTGGAATTC  1122