BAC Information

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BAC

Clone NameB6Ng01-135L23
Chromosome13 (Build37)
Map Location 12,561,800 - 12,700,963
singlet/doubletdoublet
Overlap geneEdaradd, Ero1lb
Upstream geneZp4, Ryr2, LOC100039678, Mtr, LOC100039826, Actn2, EG432725, Heatr1, LOC546246, Lgals8, LOC100039900
Downstream geneLOC664862, EG238507, LOC100039744, EG630757, Prl2c3, LOC100039999, LOC100039754, Prl2c2, LOC434483, LOC674723, Prl2c5, LOC630611, LOC100039786, LOC385049, LOC630663, LOC100040108, Gpr137b, LOC664960, Nid1, Lyst
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-135L23.bB6Ng01-135L23.g
ACCDH935708DH935709
length1,143583
definitionDH935708|Mus musculus domesticus DNA, BAC clone: B6Ng01-135L23, 5' end.DH935709|Mus musculus domesticus DNA, BAC clone: B6Ng01-135L23, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(12,699,807 - 12,700,963)(12,561,800 - 12,562,380)
sequence
gaattcattctaacaaccatttctttcaacttcctagaacacactgtact
actgtgtgtcctaagcttggaacaaatcatagttaagaaaaattcagcaa
gtggaaatgaagatttttccccccttaagcaaatagtttaaataatagca
tctaactgcagtggtgataagtgacatttccaaacaatctccacatttaa
aataaaaatagacaaagtgcaaaatttccacctttccttacattctaaat
gggcactacagaacccgctggtgtacaaggcaaggtcactggcattcact
tggtgggctttttatcttagagtggcccgttcccatcacatggcaatact
tgcaactctttaaaaaataaaaagcaaagaaaaaagaaaacttcaagcca
gcttaaaaagagtaatcaaccgacaaaattcactactatcaacaaaacat
taagtttataaagattaggaatgaggagcagaaataatcatagaggcctc
aggtctcatcacacctctgtagtggaagactaggcattcagaggggaatg
agccaacttaataatctggcctacaccatgaagttacaaggaacacagta
aagactttggcagataggatgtggatttaagagcacttactgtttactcc
agaaagacagaatctaaggagaagcgagatttttggactcgcatagataa
aaacctttcaagtaatcccattatacactgccacctttaaaagaaccaag
atttaaaatatttaaagattttttaaatcccgggtttagaaaatggcagt
ttagggccattttagtcctccactgtcttgagtcaccaaaggatggctga
tccgggatgaactgaagatggagggacagggaggaagtgacagccgtgct
gaagcagctcaccagacagtcgcacaaaagaggtagaggattgcatagat
tgtgttcaaatcaaatattgaaaatgcttactttaaaacagcaaaatgtg
tgtgtaatccaattagcattataaactcataggatcccattcaaatttgt
gaagaaaaaattccataaataataggcttttcataaaacactgaaattgt
ctatatagagaggaacaagagaaagccgaaggactgtaggctt
gaattccttagccactgactgtggaccttctggaagttgaggcaatggtg
aaggtagcagaagctgcactgtttctgaaaacagggccatttgttggagt
gggatttagggtaaagttctagcctaagctgactcttggcacttccggca
gttggtatgggtagcaatcttagcagttcctagtaatggccggatgagtc
aggatctattgactgtgtctattgacggatccagactcatctctcctgtg
agttctttcaggatgagagaaggtttgagagaggggattactgcacacgg
ctggctggctccagcatctagaactagactccttaatgggctgaggagat
ggctcctttggtaaagtgcctgtcactccaagcttgagggcctgagtcac
ccacatgaaagccaagatcagtgggaaagtcatgcatctttaaaagctct
ctctctctctctctctctctctctctctctctctctctctctccctccct
ccctccctccttctccctcccctcccccaagctttaaatatgtgtgcctc
tgggcagggtgtgtgtgtgtgtgtgtgtgtgtg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr13_12699807_12700963
seq2: B6Ng01-135L23.b_47_1189 (reverse)

seq1  AAGCCTACAGCTCCCCTTCTGGCTTTTCTCTTTGTTCCTCTTCTAATTAT  50
      ||||||||||    ||||| ||| |||||| ||||||||| ||||  |||
seq2  AAGCCTACAG---TCCTTC-GGC-TTTCTC-TTGTTCCTC-TCTA--TAT  41

seq1  AGACATTTTCAGTTGTTTTATGAAAAGCCCTATTTATTTAATGGATTTTT  100
      ||||| |||||| |||||||||||||| |||| |||||| ||||| ||||
seq2  AGACAATTTCAG-TGTTTTATGAAAAG-CCTA-TTATTT-ATGGAATTTT  87

seq1  TTCTTCACAAAATTTGAATGGGATCCTATGGGTTTATAATGCTAATTGGA  150
      |||||||| ||||||||||||||||||||| |||||||||||||||||||
seq2  TTCTTCAC-AAATTTGAATGGGATCCTATGAGTTTATAATGCTAATTGGA  136

seq1  TTACACACACATTTTGCTGTTTTAAAGTAAGCATTTTCAATATTTGATTT  200
      ||||||||||||||||||||||||||||||||||||||||||||||| ||
seq2  TTACACACACATTTTGCTGTTTTAAAGTAAGCATTTTCAATATTTGA-TT  185

seq1  TGAACACAATCTATGCAATCCTCTACCTCTTTTGTGCGACTGTCTGGTGA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAACACAATCTATGCAATCCTCTACCTCTTTTGTGCGACTGTCTGGTGA  235

seq1  GCTGCTTCAGCACGGCTGTCACTTCCTCCCTGTCCCTCCATCTTCAGTTC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGCTTCAGCACGGCTGTCACTTCCTCCCTGTCCCTCCATCTTCAGTTC  285

seq1  ATCCCGGATCAGCCATCC-TTGGTGACTCAAGACAGTGGAGGACTAAAAT  349
      |||||||||||||||||| |||||||||||||||||||||||||||||||
seq2  ATCCCGGATCAGCCATCCTTTGGTGACTCAAGACAGTGGAGGACTAAAAT  335

seq1  GGCCCTAAACTGCCATTTTCTAAACCCGGGATTTAAAAAATCTTTAAATA  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCCCTAAACTGCCATTTTCTAAACCCGGGATTTAAAAAATCTTTAAATA  385

seq1  TTTTAAATCTTGGTTCTTTTAAAGGTGGCAGTGTATAATGGGATTACTTG  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTAAATCTTGGTTCTTTTAAAGGTGGCAGTGTATAATGGGATTACTTG  435

seq1  AAAGGTTTTTATCTATGCGAGTCCAAAAATCTCGCTTCTCCTTAGATTCT  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGGTTTTTATCTATGCGAGTCCAAAAATCTCGCTTCTCCTTAGATTCT  485

seq1  GTCTTTCTGGAGTAAACAGTAAGTGCTCTTAAATCCACATCCTATCTGCC  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTTTCTGGAGTAAACAGTAAGTGCTCTTAAATCCACATCCTATCTGCC  535

seq1  AAAGTCTTTACTGTGTTCCTTGTAACTTCATGGTGTAGGCCAGATTATTA  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGTCTTTACTGTGTTCCTTGTAACTTCATGGTGTAGGCCAGATTATTA  585

seq1  AGTTGGCTCATTCCCCTCTGAATGCCTAGTCTTCCACTACAGAGGTGTGA  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTGGCTCATTCCCCTCTGAATGCCTAGTCTTCCACTACAGAGGTGTGA  635

seq1  TGAGACCTGAGGCCTCTATGATTATTTCTGCTCCTCATTCCTAATCTTTA  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGACCTGAGGCCTCTATGATTATTTCTGCTCCTCATTCCTAATCTTTA  685

seq1  TAAACTTAATGTTTTGTTGATAGTAGTGAATTTTGTCGGTTGATTACTCT  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAACTTAATGTTTTGTTGATAGTAGTGAATTTTGTCGGTTGATTACTCT  735

seq1  TTTTAAGCTGGCTTGAAGTTTTCTTTTTTCTTTGCTTTTTATTTTTTAAA  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTAAGCTGGCTTGAAGTTTTCTTTTTTCTTTGCTTTTTATTTTTTAAA  785

seq1  GAGTTGCAAGTATTGCCATGTGATGGGAACGGGCCACTCTAAGATAAAAA  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTTGCAAGTATTGCCATGTGATGGGAACGGGCCACTCTAAGATAAAAA  835

seq1  GCCCACCAAGTGAATGCCAGTGACCTTGCCTTGTACACCAGCGGGTTCTG  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCCACCAAGTGAATGCCAGTGACCTTGCCTTGTACACCAGCGGGTTCTG  885

seq1  TAGTGCCCATTTAGAATGTAAGGAAAGGTGGAAATTTTGCACTTTGTCTA  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGTGCCCATTTAGAATGTAAGGAAAGGTGGAAATTTTGCACTTTGTCTA  935

seq1  TTTTTATTTTAAATGTGGAGATTGTTTGGAAATGTCACTTATCACCACTG  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTATTTTAAATGTGGAGATTGTTTGGAAATGTCACTTATCACCACTG  985

seq1  CAGTTAGATGCTATTATTTAAACTATTTGCTTAAGGGGGGAAAAATCTTC  1049
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTTAGATGCTATTATTTAAACTATTTGCTTAAGGGGGGAAAAATCTTC  1035

seq1  ATTTCCACTTGCTGAATTTTTCTTAACTATGATTTGTTCCAAGCTTAGGA  1099
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTCCACTTGCTGAATTTTTCTTAACTATGATTTGTTCCAAGCTTAGGA  1085

seq1  CACACAGTAGTACAGTGTGTTCTAGGAAGTTGAAAGAAATGGTTGTTAGA  1149
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACACAGTAGTACAGTGTGTTCTAGGAAGTTGAAAGAAATGGTTGTTAGA  1135

seq1  ATGAATTC  1157
      ||||||||
seq2  ATGAATTC  1143

seq1: chr13_12561800_12562380
seq2: B6Ng01-135L23.g_69_651

seq1  GAATTCCTTAGCCACTGACTGTGGACCTTCTGGAAGTTGAGGCAATGGTG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCTTAGCCACTGACTGTGGACCTTCTGGAAGTTGAGGCAATGGTG  50

seq1  AAGGTAGCAGAAGCTGCACTGTTTCTGAAAACAGGGCCATTTGTTGGAGT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGTAGCAGAAGCTGCACTGTTTCTGAAAACAGGGCCATTTGTTGGAGT  100

seq1  GGGATTTAGGGTAAAGTTCTAGCCTAAGCTGACTCTTGGCACTTCCGGCA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGATTTAGGGTAAAGTTCTAGCCTAAGCTGACTCTTGGCACTTCCGGCA  150

seq1  GTTGGTATGGGTAGCAATCTTAGCAGTTCCTAGTAATGGCCGGATGAGTC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTGGTATGGGTAGCAATCTTAGCAGTTCCTAGTAATGGCCGGATGAGTC  200

seq1  AGGATCTATTGACTGTGTCTATTGACGGATCCAGACTCATCTCTCCTGTG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGATCTATTGACTGTGTCTATTGACGGATCCAGACTCATCTCTCCTGTG  250

seq1  AGTTCTTTCAGGATGAGAGAAGGTTTGAGAGAGGGGATTACTGCACACGG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTCTTTCAGGATGAGAGAAGGTTTGAGAGAGGGGATTACTGCACACGG  300

seq1  CTGGCTGGCTCCAGCATCTAGAACTAGACTCCTTAATGGGCTGAGGAGAT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGCTGGCTCCAGCATCTAGAACTAGACTCCTTAATGGGCTGAGGAGAT  350

seq1  GGCTCCTTTGGTAAAGTGCCTGTCACTCCAAGCTTGAGGGCCTGAGTCAC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTCCTTTGGTAAAGTGCCTGTCACTCCAAGCTTGAGGGCCTGAGTCAC  400

seq1  CCACATGAAAGCCAAGATCAGTGGGAAAGTCATGCATCTTTAAAAG--CT  448
      ||||||||||||||||||||||||||||||||||||||||||||||  ||
seq2  CCACATGAAAGCCAAGATCAGTGGGAAAGTCATGCATCTTTAAAAGCTCT  450

seq1  CTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCCCTCCCT  498
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCCCTCCCT  500

seq1  CCCTCCCTCCTTCTCCCTCCCCTCCCCCAAGCTTTAAATATGTGTGCCTC  548
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTCCCTCCTTCTCCCTCCCCTCCCCCAAGCTTTAAATATGTGTGCCTC  550

seq1  TGGGCAGGGTGTGTGTGTGTGTGTGTGTGTGTG  581
      |||||||||||||||||||||||||||||||||
seq2  TGGGCAGGGTGTGTGTGTGTGTGTGTGTGTGTG  583