BAC Information

Click to search

BAC

Clone NameB6Ng01-135O04
Chromosome13 (Build37)
Map Location 9,052,888 - 9,054,038
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC382722, Adarb2, EG666941, Wdr37, LOC100039632, Idi1, EG382723, LOC100039655, Idi2, Gtpbp4, LOC667721
Downstream geneLarp5, EG667727, LOC100039719, Dip2c, LOC666986, Zmynd11, Chrm3, LOC100039604
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-135O04.g
ACCDH935813
length1,124
definitionDH935813|Mus musculus domesticus DNA, BAC clone: B6Ng01-135O04, 3' end.
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattcaatacccactaacattccctctgcttctgtgactctagaatcct
aatggcgtgagaaacttcattaacttgaaacctgataatttgtagtttgt
taaaatcacactggggttggggatttagctcagtggtagagcgcttgcct
agcaagcgcaaggccctgggttcggtcctcagctctggaaaaaaaaaaaa
aaaaaaaaaaagacaaaataaaatcacactgggctcaagttgtggtgtgc
ttttgagctaataaaaagactttctttttaaagatttatttatctcgtgt
agatgagtacactgtagctgtacagatggttgtgagccaccaagtggttg
ctgggatttgaactcaggaccttcagaagagcagtcagtgctcttaacca
ctgagccatcttttcagcccataaaaagactttctaggcaaggaatgttc
ctgaagatcaaactaaggtcaaagatctctgatataatatgcaaataatt
tgtacatctattaaggtagtttctcagagactgtgttcaagtatattctt
ctacttagcaagtctggtttagcattacattgaaactaaatctgctggac
ctttcactaattccattagccactcctcccagttactgtgagcctagggt
tctgccacatgcagccgccttaaacacagacgtagaaagaggactgaaag
ggcttccttccttctaaccgatgaacacaaagacaagccccacgggatgg
acactgtcttgccagtcagaaggtgtaaatctgcaagctcaccatctgac
tgtggtgcttgagttgttggtcacctctccaaaggctgaaatcctgtgac
ccacaaagatggatattttttttcttgaactctgtgataggagtgaaagt
gtgtactctggtaacaggaggaagcctcaggggaacgttacagagaacac
taagttctagtttagtgaaattaattgggtagtactatatgtccgagaga
aaacagatgccatctcactagtgtttcacagaacatggccgtcatactca
atctcaatctggtcttgtctagattgacttagtctgactttttttcaaga
atattagtatatataagtacctat
quality valuesOpen.




Alignment Information

BAC End 1BAC End 2
seq1: chr13_9052888_9054038
seq2: B6Ng01-135O04.g_67_1190 (reverse)

seq1  ATAGTGTACTTATATATAATAAATAAATAAATCTTTAAAAAAAAAAGTCA  50
      |||| ||||||||||||| |||       | ||||    |||||||||||
seq2  ATAG-GTACTTATATATACTAA------TATTCTT---GAAAAAAAGTCA  40

seq1  GATGTAGTCAGATCTAGACAGAGA-CAGATTGGAAGATTGGAGTTATGGA  99
      ||   ||||| ||||||||| ||| |||||||  ||||| ||| ||||  
seq2  GACTAAGTCA-ATCTAGACA-AGACCAGATTG--AGATT-GAG-TATG--  82

seq1  ACGGCCATTGTTCTGTGAAACACTTAAGTTGAAGATGGCATCTGTTTTCT  149
      ||||||| ||||||||||||||||  |||   ||||||||||||||||||
seq2  ACGGCCA-TGTTCTGTGAAACACT--AGT--GAGATGGCATCTGTTTTCT  127

seq1  CTTCGGACATTATAGTTACTACCCAATTAATTTTCACCTAAACTAGAACT  199
      | ||||||| ||||| |||||||||||||| ||||| |||||||||||||
seq2  C-TCGGACA-TATAG-TACTACCCAATTAA-TTTCA-CTAAACTAGAACT  172

seq1  TAGTGTTCTTCTGTAACGTTCCCCTGAGGCTTCCTCCTGTTACCAGAGTA  249
      |||||||| |||||||||||||||||||||||||||||||||||||||||
seq2  TAGTGTTC-TCTGTAACGTTCCCCTGAGGCTTCCTCCTGTTACCAGAGTA  221

seq1  CACACTTTCACTCCTATCACAGAGTTCAAG-AAAAAAATATCCATCTTTG  298
      |||||||||||||||||||||||||||||| |||||||||||||||||||
seq2  CACACTTTCACTCCTATCACAGAGTTCAAGAAAAAAAATATCCATCTTTG  271

seq1  TGGGTCACAGGATTTCAGCCTTTGGAGAGGTGACCAACAACTCAAGCACC  348
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGTCACAGGATTTCAGCCTTTGGAGAGGTGACCAACAACTCAAGCACC  321

seq1  ACAGTCAGATGGTGAGCTTGCAGATTTACACCTTCTGACTGGCAAGACAG  398
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGTCAGATGGTGAGCTTGCAGATTTACACCTTCTGACTGGCAAGACAG  371

seq1  TGTCCATCCCGTGGGGCTTGTCTTTGTGTTCATCGGTTAGAAGGAAGGAA  448
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCCATCCCGTGGGGCTTGTCTTTGTGTTCATCGGTTAGAAGGAAGGAA  421

seq1  GCCCTTTCAGTCCTCTTTCTACGTCTGTGTTTAAGGCGGCTGCATGTGGC  498
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCCTTTCAGTCCTCTTTCTACGTCTGTGTTTAAGGCGGCTGCATGTGGC  471

seq1  AGAACCCTAGGCTCACAGTAACTGGGAGGAGTGGCTAATGGAATTAGTGA  548
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAACCCTAGGCTCACAGTAACTGGGAGGAGTGGCTAATGGAATTAGTGA  521

seq1  AAGGTCCAGCAGATTTAGTTTCAATGTAATGCTAAACCAGACTTGCTAAG  598
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGTCCAGCAGATTTAGTTTCAATGTAATGCTAAACCAGACTTGCTAAG  571

seq1  TAGAAGAATATACTTGAACACAGTCTCTGAGAAACTACCTTAATAGATGT  648
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGAAGAATATACTTGAACACAGTCTCTGAGAAACTACCTTAATAGATGT  621

seq1  ACAAATTATTTGCATATTATATCAGAGATCTTTGACCTTAGTTTGATCTT  698
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAATTATTTGCATATTATATCAGAGATCTTTGACCTTAGTTTGATCTT  671

seq1  CAGGAACATTCCTTGCCTAGAAAGTCTTTTTATGGGCTGAAAAGATGGCT  748
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGAACATTCCTTGCCTAGAAAGTCTTTTTATGGGCTGAAAAGATGGCT  721

seq1  CAGTGGTTAAGAGCACTGACTGCTCTTCTGAAGGTCCTGAGTTCAAATCC  798
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTGGTTAAGAGCACTGACTGCTCTTCTGAAGGTCCTGAGTTCAAATCC  771

seq1  CAGCAACCACTTGGTGGCTCACAACCATCTGTACAGCTACAGTGTACTCA  848
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCAACCACTTGGTGGCTCACAACCATCTGTACAGCTACAGTGTACTCA  821

seq1  TCTACACGAGATAAATAAATCTTTAAAAAGAAAGTCTTTTTATTAGCTCA  898
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTACACGAGATAAATAAATCTTTAAAAAGAAAGTCTTTTTATTAGCTCA  871

seq1  AAAGCACACCACAACTTGAGCCCAGTGTGATTTTATTTTGTCTTTTTTTT  948
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGCACACCACAACTTGAGCCCAGTGTGATTTTATTTTGTCTTTTTTTT  921

seq1  TTTTTTTTTTTTTTTCCAGAGCTGAGGACCGAACCCAGGGCCTTGCGCTT  998
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTTTTTTTTTTTCCAGAGCTGAGGACCGAACCCAGGGCCTTGCGCTT  971

seq1  GCTAGGCAAGCGCTCTACCACTGAGCTAAATCCCCAACCCCAGTGTGATT  1048
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTAGGCAAGCGCTCTACCACTGAGCTAAATCCCCAACCCCAGTGTGATT  1021

seq1  TTAACAAACTACAAATTATCAGGTTTCAAGTTAATGAAGTTTCTCACGCC  1098
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAACAAACTACAAATTATCAGGTTTCAAGTTAATGAAGTTTCTCACGCC  1071

seq1  ATTAGGATTCTAGAGTCACAGAAGCAGAGGGAATGTTAGTGGGTATTGAA  1148
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTAGGATTCTAGAGTCACAGAAGCAGAGGGAATGTTAGTGGGTATTGAA  1121

seq1  TTC  1151
      |||
seq2  TTC  1124