BAC Information

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BAC

Clone NameB6Ng01-136D03
Chromosome13 (Build37)
Map Location 21,466,499 - 21,467,079
singlet/doubletsinglet
Overlap genenone
Upstream geneElmo1, LOC100040226, LOC665381, LOC665386, Aoah, Olfr1370, Olfr1369-ps1, Olfr42, Olfr1368, Trim27, Gpx5, LOC625752, Gpx6, Olfr1367, Zfp96
Downstream geneLOC665454, Zkscan3, Pgbd1, 4930470G03Rik, Zfp187, 4921504I05Rik, OTTMUSG00000000421, AK157302, LOC100040340, Zfp192, Olfr1366, Olfr1365, Olfr1364, Olfr1362, Olfr1363-ps1, Olfr11, Olfr1361, Olfr1360, Olfr1359, Hist1h2bl, Hist1h2ai, Hist1h3h, Hist1h2aj, Hist1h2bm, Hist1h4j, Hist1h4k, Hist1h2ak, Hist1h2bn, LOC100041150, Hist1h1b, Hist1h3i, Hist1h2an, Hist1h2bp, LOC665596, Rp23-480b19.10, LOC100041230, Hist1h4m, Hist1h2ao, LOC665622, LOC665634, Zfp184, Gm24, Prss16, Hist1h2ah, Hist1h2bk, Hist1h4i, Hist1h2ag, Hist1h2bj, LOC665690, V1rh17, V1rh2, V1ri8, LOC632534, V1ri1, V1ri9, OTTMUSG00000000480, V1ri6, LOC665726, V1rh21, V1ri3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-136D03.bB6Ng01-136D03.g
ACCDH936033DH936034
length1,228735
definitionDH936033|Mus musculus domesticus DNA, BAC clone: B6Ng01-136D03, 5' end.DH936034|Mus musculus domesticus DNA, BAC clone: B6Ng01-136D03, 3' end.
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattcaacaccccactctcagcaatggaaagatcatggaaacagaaact
aaacagaaacacagtgaaactaagggaagttatgaaccagatggatctaa
cagatatttagagcatttcccccaaaagcaagataatattccttcttctc
agcacctcacagtatattctccaaaattgaccatataattggtcaaaaaa
cgggactcatcagacacaagaagattgtaataattccatgcatcttatca
gatcaccacagattaagactggtcttcagtatacatgaacatggaagttg
aacaatgctctactcaatgataacttggtcaaggaagaaataaagagaga
aattaaagacattttacaatttaataaaaatagaggcacattcaagtgtc
cggtcatggtgcccataccaaagtttatgggcaccatgaaagcagtgcta
agaggaaaattcatagctctgcatgagtccaaaaagaaactggaaagagc
atatactagcaccttgaccagtcacctgaaagctctagaacaaaaggaag
caaatacaacctagaggaattgatggcaggaaataatcaaactcagggtt
gaaatcaaccaagtacaaaccaaaagaactatacaaaggatcaacaaaac
ttggagcctgttctttgagaaaatcaatgtggtaaataaaccctgagcca
gactaaccagagggcacagagacagtatccaaattaacaaaatcagaaat
gaaaagggagacataacaacagaaactgaggaaattaaaaaaaaaaatca
tatctacaagaaaagcctatactaaaaaacaaaacaaaacaaaaaaccaa
aaaaaaaaaaaaacctgggaaatctggatgaaatagaccgttttctagaa
agataccggggaacaaaatttaatcaggatcagataaatcatctaaacag
tcatatatcccgtacagaaatacaagcagtcataaaatctccaatcctaa
aaaaaaaaaaaaagcccagaccagatgggtttatgcagaatttatcagac
tcaagagactataccatactcttcaactatcacaaataaaaacgaagaac
cttcccaatcatcatcaagctcagtaggcttgaatacatcagatgacaga
agaagctcgaccattcatgagcaatccatagagctgcactgatccaacct
ttacaacatcctactgatcgaaagaggt
gaattcattcataaaacaattacaaaatctttagtaaatacaagctgaaa
ctttaagtcagtttctgtgctttcatggcccttggtcttatgaagatcat
atggcccagtacaggggaatgccagggccaggaagagggagtgggtgggt
tgggcaactcttataaaaacaacatttagttggggctggcttacaggttc
agagggtcagtccagtttcatcaaggctggagcatggcagtgtccaggca
ggcatggtgcaggctgagatgagagttctacatcttcatctgaaggctgc
tagcagaatactggcttccaagcagataggatgagggtcttatagcccac
acccacagtgacacacctactccaatagtgccactccctgggccgagcat
atacaaaccatcacagtatcatggctcattttctgtccggctggtctgtt
aattactgaaagtggtatatagaggaagtctgctgaaatggagtggtgaa
atatccaaatattgtcatagtcaggatactttttaagaacactggggatt
gaatccagggtcttgtgtattttaggcaagtattctaccactgagctaca
tccctagtcctaaatacttttgtaaatcaaggagaaaagcaaaacaaaac
aaaacaaaaccaacccgaaactggatgtgggagctctctgctgtatccta
gcactcaggaagcagattcatgagggttcaggttt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr13_21466499_21467079
seq2: B6Ng01-136D03.g_220_801 (reverse)

seq1  AAACCTGAACCCTCCTGAATCTGCTTCCTGAGTGCTAGGATTACAGCAG-  49
      |||||||||||||| ||||||||||||||||||||||||| |||||||| 
seq2  AAACCTGAACCCTCATGAATCTGCTTCCTGAGTGCTAGGA-TACAGCAGA  49

seq1  GAGCTACCACATCCAGTTTCGGGTTGGTTTTGTTTTGTTTTGTTTTGC-T  98
      ||||| |||||||||||||||||||||||||||||||||||||||||| |
seq2  GAGCTCCCACATCCAGTTTCGGGTTGGTTTTGTTTTGTTTTGTTTTGCTT  99

seq1  TTCTCCTTGATTTACAAAAGTATTTAGGACTAGGGATGTAGCTCAGTGGT  148
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTCCTTGATTTACAAAAGTATTTAGGACTAGGGATGTAGCTCAGTGGT  149

seq1  AGAATACTTGCCTAAAATACACAAGACCCTGGATTCAATCCCCAGTGTTC  198
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAATACTTGCCTAAAATACACAAGACCCTGGATTCAATCCCCAGTGTTC  199

seq1  TTAAAAAGTATCCTGACTATGACAATATTTGGATATTTCACCACTCCATT  248
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAAAAGTATCCTGACTATGACAATATTTGGATATTTCACCACTCCATT  249

seq1  TCAGCAGACTTCCTCTATATACCACTTTCAGTAATTAACAGACCAGCCGG  298
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGCAGACTTCCTCTATATACCACTTTCAGTAATTAACAGACCAGCCGG  299

seq1  ACAGAAAATGAGCCATGATACTGTGATGGTTTGTATATGCTCGGCCCAGG  348
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGAAAATGAGCCATGATACTGTGATGGTTTGTATATGCTCGGCCCAGG  349

seq1  GAGTGGCACTATTGGAGTAGGTGTGTCACTGTGGGTGTGGGCTATAAGAC  398
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTGGCACTATTGGAGTAGGTGTGTCACTGTGGGTGTGGGCTATAAGAC  399

seq1  CCTCATCCTATCTGCTTGGAAGCCAGTATTCTGCTAGCAGCCTTCAGATG  448
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCATCCTATCTGCTTGGAAGCCAGTATTCTGCTAGCAGCCTTCAGATG  449

seq1  AAGATGTAGAACTCTCATCTCAGCCTGCACCATGCCTGCCTGGACACTGC  498
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGATGTAGAACTCTCATCTCAGCCTGCACCATGCCTGCCTGGACACTGC  499

seq1  CATGCTCCAGCCTTGATGAAACTGGACTGACCCTCTGAACCTGTAAGCCA  548
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGCTCCAGCCTTGATGAAACTGGACTGACCCTCTGAACCTGTAAGCCA  549

seq1  GCCCCAACTAAATGTTGTTTTTATAAGAGTTGC  581
      |||||||||||||||||||||||||||||||||
seq2  GCCCCAACTAAATGTTGTTTTTATAAGAGTTGC  582