BAC Information

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BAC

Clone NameB6Ng01-136H23
Chromosome13 (Build37)
Map Location 108,430,244 - 108,617,094
singlet/doubletdoublet
Overlap geneZswim6
Upstream geneIpo11, Dimt1, Kif2a, LOC100040322, LOC100040350, LOC100040366, Apoo, AI197445, LOC100040820
Downstream gene3021401N23Rik, 2810008M24Rik, Ndufa12l, Ercc8, LOC668123, LOC621498, Elovl7, LOC668129, LOC100040524, Depdc1b, Pde4d, EG668144, LOC621663
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-136H23.bB6Ng01-136H23.g
ACCDH936254DH936255
length1,1561,114
definitionDH936254|Mus musculus domesticus DNA, BAC clone: B6Ng01-136H23, 5' end.DH936255|Mus musculus domesticus DNA, BAC clone: B6Ng01-136H23, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(108,615,936 - 108,617,094)(108,430,244 - 108,431,369)
sequence
gaattcttaagcacaggcacagcgttgcctagttctttaagagtagtctg
cctttcacatctctcagccagggttcattattgtttggaggtacttccca
ttgcagagtgaatattctacaaagaaagccactgtggtctgtgggatgga
atcaactttttcctttagagatgatcctgtcagcagcaggtcttggcttc
tgcagttagtcactggctttagctgcccagaggagtttacaaagatcaca
agataactgcaccgttatcttggtggttgtgttactctgatggtatcgca
gccacgccagttccatgaacctcccgagtaaaccagtgctacgtctgggc
tcaccaggaagttgatgctttttttgtttgtttgtgctcacagattcatt
gcaacatttcgatgttgagattaaggccggcttccaggcttccaggtata
gaattgcattacccagcaaaataagcactagctgcgagtgattatttcaa
ttttaactaattcttttaaataatattaaacatttggttcccacttttgc
attgcatgtggttaatgtattgaatagctcaggtatggaatgtttcatca
ttggagagatgtctgctagacaagacttgtttagaatcacattccttgtc
catcagtgcaagtctctgatagacttttgatctgacagataggcctttta
gaacaatgatagggtgtagcccttaccttctggttgtattacaaaagaga
acatgccaacagataatgaagtggtctaggctggtgtcagatgaacaact
gggctggaggtagccacggttttattacatggaggagcttggagaccata
ctcagaggtctgattgaggcctgattctaccacttacacccaatagacat
ctgtgtttattctttgtcttttccttttagtttcttcacttgtaaataat
aaaaggttggtgtactaaataattgggaaatgccttgtttgtttacgtag
acttttctaaaatgagagggcttgcttaagtatttgtgctcagctagctg
agcatttcctgtcgatgacgtcatactgatgatgtataagaggcctgctt
taataagttttcttttggaaatactaacacgctggagaaattgtccttgg
atttat
gaattcacttgaaggcctagaccttttggtacagaatttaacattgcaat
acatagcagcagaccacctcaatagaacagcacttaaggaatggtggacc
tgacagtaaccagtaataggctggactgtccttaaccttacacattccca
catctgaagtctcctaagtcagccctttaggtgatgttcagttaggtttc
tactgctgtgataaaacaccatgatcaaaagcaacgtagcgagaaaggga
tttatttcagcttaaagttctccatcacagtcaaaggaagtcaagacagg
cactggagcagtgcaagaacctggagataggagctgatgcagggggatgc
tgcgtactggcttgctactcggggcttgcttatcctgatttcctatacca
tcccaaacccccctgcctagggatcacaccacctccaatgggcagatcct
tctcatatcaatgactaatcaggagaatacccccacaggccaatccggtg
gaggcagtctcttaactgagtctcctcctgcccaaatgactctaggtcct
gtcaagttgaagcaacactagccagcacagtaatctcacagttcatttac
tgagatttttaaatgacacatcaataagcagggcatggtggcacatgcct
ctaagggaggcagaggcaggtggataacggccaacctggtctacaaagcc
aattccaggacagccagggctgttacacagagaaactctgtctcaaaaaa
caaaaacaaaaacaaaaacaaaaacccaaaaccaatagtcagaaccaaaa
acaaagcaaagacaaagaaacaaaaagacacatcaatgttgtggtaactt
ctaagtgagcacctgtattagttactcgtttcctgctgtgacaaatatct
ggcaagaagtaacttcagaaaggaagacttattttggctcacagcttcag
gtacgcaccctttccttcatggctgcaagtgaagggaaaggaaggagctt
aaacagctgcccacacgtgtctgcagtcgctaagctaagaaggaagaaga
aggagctcagctgtttttttcttctgtttaatggacttcagcccagcaag
tgcacccactgtgg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr13_108615936_108617094
seq2: B6Ng01-136H23.b_37_1192 (reverse)

seq1  ATAAATACAAGGACAA-TTCT-CAGCGTGTTAGTTATTTCAAAAAAGAAA  48
      |||||| ||||||||| |||| ||||||||||| ||||||  ||||||||
seq2  ATAAATCCAAGGACAATTTCTCCAGCGTGTTAG-TATTTC-CAAAAGAAA  48

seq1  AC-TAATAAAGCAGCCTTCCTTATACATCAATCAGTATGACGTCATCGAC  97
      || || |||||||| | | |||||||||| ||||||||||||||||||||
seq2  ACTTATTAAAGCAGGCCT-CTTATACATC-ATCAGTATGACGTCATCGAC  96

seq1  AGGAAATGCTCAGCTAGCCTGAGCACAAATACTTAAGCAAGCCCTCTCAT  147
      ||||||||||||||||| ||||||||||||||||||||||||||||||||
seq2  AGGAAATGCTCAGCTAG-CTGAGCACAAATACTTAAGCAAGCCCTCTCAT  145

seq1  TTTTAGAAAGTCTACGTAAACAAACAAGGCATTTCCCAATTATTTAGTAC  197
      |||   ||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAGAAAAGTCTACGTAAACAAACAAGGCATTTCCCAATTATTTAGTAC  195

seq1  ACCAACCTTTTATTATTTTACAAGTGAAGAAACTAAAAGGAAAAGACAAA  247
      ||||||||||||||| ||||||||||||||||||||||||||||||||||
seq2  ACCAACCTTTTATTA-TTTACAAGTGAAGAAACTAAAAGGAAAAGACAAA  244

seq1  GAATAAACACAGATGTCTATTGGGTGTAAGTGGTAGAATCAGGCCTCAAT  297
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATAAACACAGATGTCTATTGGGTGTAAGTGGTAGAATCAGGCCTCAAT  294

seq1  CAGACCTCTGAGTATGGTCTCCAAGCTCCTCCATGTAATAAAACCGTGGC  347
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGACCTCTGAGTATGGTCTCCAAGCTCCTCCATGTAATAAAACCGTGGC  344

seq1  TACCTCCAGCCCAGTTGTTCATCTGACACCAGCCTAGACCACTTCATTAT  397
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACCTCCAGCCCAGTTGTTCATCTGACACCAGCCTAGACCACTTCATTAT  394

seq1  CTGTTGGCATGTTCTCTTTTGTAATACAACCAGAAGGTAAGGGCTACACC  447
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTTGGCATGTTCTCTTTTGTAATACAACCAGAAGGTAAGGGCTACACC  444

seq1  CTATCATTGTTCTAAAAGGCCTATCTGTCAGATCAAAAGTCTATCAGAGA  497
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATCATTGTTCTAAAAGGCCTATCTGTCAGATCAAAAGTCTATCAGAGA  494

seq1  CTTGCACTGATGGACAAGGAATGTGATTCTAAACAAGTCTTGTCTAGCAG  547
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGCACTGATGGACAAGGAATGTGATTCTAAACAAGTCTTGTCTAGCAG  544

seq1  ACATCTCTCCAATGATGAAACATTCCATACCTGAGCTATTCAATACATTA  597
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATCTCTCCAATGATGAAACATTCCATACCTGAGCTATTCAATACATTA  594

seq1  ACCACATGCAATGCAAAAGTGGGAACCAAATGTTTAATATTATTTAAAAG  647
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCACATGCAATGCAAAAGTGGGAACCAAATGTTTAATATTATTTAAAAG  644

seq1  AATTAGTTAAAATTGAAATAATCACTCGCAGCTAGTGCTTATTTTGCTGG  697
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTAGTTAAAATTGAAATAATCACTCGCAGCTAGTGCTTATTTTGCTGG  694

seq1  GTAATGCAATTCTATACCTGGAAGCCTGGAAGCCGGCCTTAATCTCAACA  747
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAATGCAATTCTATACCTGGAAGCCTGGAAGCCGGCCTTAATCTCAACA  744

seq1  TCGAAATGTTGCAATGAATCTGTGAGCACAAACAAACAAAAAAAGCATCA  797
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCGAAATGTTGCAATGAATCTGTGAGCACAAACAAACAAAAAAAGCATCA  794

seq1  ACTTCCTGGTGAGCCCAGACGTAGCACTGGTTTACTCGGGAGGTTCATGG  847
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTCCTGGTGAGCCCAGACGTAGCACTGGTTTACTCGGGAGGTTCATGG  844

seq1  AACTGGCGTGGCTGCGATACCATCAGAGTAACACAACCACCAAGATAACG  897
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTGGCGTGGCTGCGATACCATCAGAGTAACACAACCACCAAGATAACG  894

seq1  GTGCAGTTATCTTGTGATCTTTGTAAACTCCTCTGGGCAGCTAAAGCCAG  947
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGCAGTTATCTTGTGATCTTTGTAAACTCCTCTGGGCAGCTAAAGCCAG  944

seq1  TGACTAACTGCAGAAGCCAAGACCTGCTGCTGACAGGATCATCTCTAAAG  997
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACTAACTGCAGAAGCCAAGACCTGCTGCTGACAGGATCATCTCTAAAG  994

seq1  GAAAAAGTTGATTCCATCCCACAGACCACAGTGGCTTTCTTTGTAGAATA  1047
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAAAGTTGATTCCATCCCACAGACCACAGTGGCTTTCTTTGTAGAATA  1044

seq1  TTCACTCTGCAATGGGAAGTACCTCCAAACAATAATGAACCCTGGCTGAG  1097
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCACTCTGCAATGGGAAGTACCTCCAAACAATAATGAACCCTGGCTGAG  1094

seq1  AGATGTGAAAGGCAGACTACTCTTAAAGAACTAGTCAACGCTGTGCCTGT  1147
      |||||||||||||||||||||||||||||||||| |||||||||||||||
seq2  AGATGTGAAAGGCAGACTACTCTTAAAGAACTAGGCAACGCTGTGCCTGT  1144

seq1  GCTTAAGAATTC  1159
      ||||||||||||
seq2  GCTTAAGAATTC  1156

seq1: chr13_108430244_108431369
seq2: B6Ng01-136H23.g_68_1181

seq1  GAATTCACTTGAAGGCCTAGACCTTTTGGTACAGAATTTAACATTGCAAT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCACTTGAAGGCCTAGACCTTTTGGTACAGAATTTAACATTGCAAT  50

seq1  ACATAGCAGCAGACCACCTCAATAGAACAGCACTTAAGGAATGGTGGACC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATAGCAGCAGACCACCTCAATAGAACAGCACTTAAGGAATGGTGGACC  100

seq1  TGACAGTAACCAGTAATAGGCTGGACTGTCCTTAACCTTACACATTCCCA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACAGTAACCAGTAATAGGCTGGACTGTCCTTAACCTTACACATTCCCA  150

seq1  CATCTGAAGTCTCCTAAGTCAGCCCTTTAGGTGATGTTCAGTTAGGTTTC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCTGAAGTCTCCTAAGTCAGCCCTTTAGGTGATGTTCAGTTAGGTTTC  200

seq1  TACTGCTGTGATAAAACACCATGATCAAAAGCAACGTAGCGAGAAAGGGA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTGCTGTGATAAAACACCATGATCAAAAGCAACGTAGCGAGAAAGGGA  250

seq1  TTTATTTCAGCTTAAAGTTCTCCATCACAGTCAAAGGAAGTCAAGACAGG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTATTTCAGCTTAAAGTTCTCCATCACAGTCAAAGGAAGTCAAGACAGG  300

seq1  CACTGGAGCAGTGCAAGAACCTGGAGATAGGAGCTGATGCAGGGGGATGC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTGGAGCAGTGCAAGAACCTGGAGATAGGAGCTGATGCAGGGGGATGC  350

seq1  TGCGTACTGGCTTGCTACTCGGGGCTTGCTTATCCTGATTTCCTATACCA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCGTACTGGCTTGCTACTCGGGGCTTGCTTATCCTGATTTCCTATACCA  400

seq1  TCCCAAACCCCCCTGCCTAGGGATCACACCACCTCCAATGGGCAGATCCT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCAAACCCCCCTGCCTAGGGATCACACCACCTCCAATGGGCAGATCCT  450

seq1  TCTCATATCAATGACTAATCAGGAGAATACCCCCACAGGCCAATCCGGTG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCATATCAATGACTAATCAGGAGAATACCCCCACAGGCCAATCCGGTG  500

seq1  GAGGCAGTCTCTTAACTGAGTCTCCTCCTGCCCAAATGACTCTAGGTCCT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGCAGTCTCTTAACTGAGTCTCCTCCTGCCCAAATGACTCTAGGTCCT  550

seq1  GTCAAGTTGAAGCAACACTAGCCAGCACAGTAATCTCACAGTTCATTTAC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCAAGTTGAAGCAACACTAGCCAGCACAGTAATCTCACAGTTCATTTAC  600

seq1  TGAGATTTTTAAATGACACATCAATAAGCAGGGCATGGTGGCACATGCCT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGATTTTTAAATGACACATCAATAAGCAGGGCATGGTGGCACATGCCT  650

seq1  CTAAGGGAGGCAGAGGCAGGTGGATAACGGCCAACCTGGTCTACAAAGCC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAAGGGAGGCAGAGGCAGGTGGATAACGGCCAACCTGGTCTACAAAGCC  700

seq1  AATTCCAGGACAGCCAGGGCTGTTACACAGAGAAACTCTGTCTCAAAAAA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTCCAGGACAGCCAGGGCTGTTACACAGAGAAACTCTGTCTCAAAAAA  750

seq1  CAAAAACAAAAACAAAAACAAAAACCCAAAACCAATAGTCAGAACCAAAA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAAACAAAAACAAAAACAAAAACCCAAAACCAATAGTCAGAACCAAAA  800

seq1  ACAAAGCAAAGACAAAGAAACAAAAAGACACATCAATGTTGTGGTAACTT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAAGCAAAGACAAAGAAACAAAAAGACACATCAATGTTGTGGTAACTT  850

seq1  CTAAGTGAGCACCTGTATTAGTTACTCGTTCCCTGCTGTGACAAAATATC  900
      |||||||||||||||||||||||||||||| ||||||||||| |||||||
seq2  CTAAGTGAGCACCTGTATTAGTTACTCGTTTCCTGCTGTGAC-AAATATC  899

seq1  TGGCAAGAAGTAACTTCAGAAAGGAAGGACTTATTTTGGCTCACAGCTTC  950
      |||||||||||||||||||||||||| |||||||||||||||||||||||
seq2  TGGCAAGAAGTAACTTCAGAAAGGAA-GACTTATTTTGGCTCACAGCTTC  948

seq1  AGGGTACGCACCC-TTCCTTCATGGCTGCAAAGTGAAGGGGAAGGGAAGG  999
      | ||||||||||| ||||||||||||||| ||||||| ||||| ||||||
seq2  A-GGTACGCACCCTTTCCTTCATGGCTGC-AAGTGAA-GGGAAAGGAAGG  995

seq1  AGCTTAAAACAGCTGCCCACACGTGTCTGCAGTCGCAAAGCTAAGAGGGA  1049
      ||||| |||||||||||||||||||||||||||||| ||||||||| |||
seq2  AGCTT-AAACAGCTGCCCACACGTGTCTGCAGTCGCTAAGCTAAGAAGGA  1044

seq1  AGAAGATAGAGGCTCAGCTTGTTTTTTTCTTCTGTTTAATGGACTCCAGC  1099
      |||||| ||  ||||||| |||||||||||||||||||||||||| ||||
seq2  AGAAGA-AGGAGCTCAGC-TGTTTTTTTCTTCTGTTTAATGGACTTCAGC  1092

seq1  CCAGGAAATGTTGCCACCCACTTGTGG  1126
      |||| || ||    ||||||| |||||
seq2  CCAGCAAGTG----CACCCAC-TGTGG  1114