BAC Information

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BAC

Clone NameB6Ng01-136I09
Chromosome13 (Build37)
Map Location 115,398,701 - 115,512,831
singlet/doubletdoublet
Overlap genenone
Upstream geneSnag1, Hspb3, EG632832, LOC622701, LOC100040927, Arl15, A430090L17Rik, Ndufs4, LOC100040958, Fst, 4930467J12Rik
Downstream geneMocs2, Itga2, LOC100040975, Itga1, Pelo, LOC100041023, LOC547402, LOC100041045
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-136I09.bB6Ng01-136I09.g
ACCDH936274DH936275
length1,086525
definitionDH936274|Mus musculus domesticus DNA, BAC clone: B6Ng01-136I09, 5' end.DH936275|Mus musculus domesticus DNA, BAC clone: B6Ng01-136I09, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(115,398,701 - 115,399,738)(115,512,301 - 115,512,831)
sequence
gaattctgtgtaagggaggctcagggattacagagtattgtggtgcaggc
acaaactttcttttttttttttaattggatattttttatatttacatttc
aaatgttatcccctttccatggctcccctctggaaacccccaccctattg
ccccaccccacccctgcttctatgagggtgccctccctccactcccgcct
ttttgccctagcattcccttacaccagggcatcaaacccacacaggccca
agtgtctgatgtccaacaagtccaccctctgccacacaccagctggagcc
atggcttcttccatgtgtactctttggttggtggtccagtcacgggcagc
cacggggtggggggagggactggccggatgacactgttgctccctgcacg
gagttgcaaaccccctcagctccttcactcccttctctaactcctccatc
tggggccctgcgctcagtccaatggttggctgcgagcatccgcctctgta
tttgtcaggctctctgaggattcgaactcagactctcatgctcatttggc
aaacactgaagagttatttcacaggtatgtggtcagacatttttttaaaa
gagacattttggtttttagatttatgccaaactccaatttaccgtgtccc
tataacagcaggagagagccccctccccccgagctttcccaaccactcca
ctaaagaaatcccctctcacaggacttgacatcaggcaagcggaagacct
gatggacacataaaactgtttattctaaagaaaccctctataaacatttc
tgaaaccctgtgtgccaacagcgtgagctggttattgaaagtcatgtgtg
tattattccattgcaaattctttttctgcgtggcttcattctcctattaa
atgcagtgttattgtattgggtggacttagccaaaatctcattttatatt
tactatatttacttgacaaagatgtccaagggagctctgacttctgagct
agtgttactctggtgcagcaccgaagtccccggccagctcctcagactgc
cacctgctttgtcaagcctacagggtgatctagcag
ttaaggctttgaggcccatacctgtacagttcctgatagagggattatga
aaatctcatttttgtggtcttttattcttgaaagtgacggatcatctctt
tggcctaaagctttcgtccttctctccttaaggctcctgttgattcgcat
atgtgcctattacctggataccataaaagagatgagtacttcacatcact
atctagagttgaaaacagtagtgcttagaaattcaatgtttccaggtagt
gtcctcagtgtgctgtgactagtatatcccagactcacttatacgtttcc
tgctttagtgtccattataataaagttagaactaggtattgggtgcattc
ctatagtatcaagcacatagaggattgaagcaggggggtgggcagattgc
tgttaggtgaaggccagcctggactacacagtgaataccaagtgagtcag
tgctatatagtgtcaatcaataaatctgacgagtctccatagggatgagt
gtgtgtgtgtgtgtgtgtgtgtgtg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr13_115398701_115399738
seq2: B6Ng01-136I09.b_111_1135

seq1  TTTTTTTTTTTAATTGGATATTTTTTATATTTACATTTCAAATGTTATCC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTTTTTTTAATTGGATATTTTTTATATTTACATTTCAAATGTTATCC  50

seq1  CCTTTCCATGGCTCCCCTCTGGAAACCCCCACCCTATTGCCCCACCCCAC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTTCCATGGCTCCCCTCTGGAAACCCCCACCCTATTGCCCCACCCCAC  100

seq1  CCCTGCTTCTATGAGGGTGCCCTCCCTCCACTCCCGCCTTTTTGCCCTAG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTGCTTCTATGAGGGTGCCCTCCCTCCACTCCCGCCTTTTTGCCCTAG  150

seq1  CATTCCCTTACACCAGGGCATCAAACCCACACAGGCCCAAGTGTCTGATG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTCCCTTACACCAGGGCATCAAACCCACACAGGCCCAAGTGTCTGATG  200

seq1  TCCAACAAGTCCACCCTCTGCCACACACCAGCTGGAGCCATGGCTTCTTC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCAACAAGTCCACCCTCTGCCACACACCAGCTGGAGCCATGGCTTCTTC  250

seq1  CATGTGTACTCTTTGGTTGGTGGTCCAGTCACGGGCAGCCACGGGGTGGG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGTGTACTCTTTGGTTGGTGGTCCAGTCACGGGCAGCCACGGGGTGGG  300

seq1  GGGAGGGACTGGCCGGATGACACTGTTGCTCCCTGCACGGAGTTGCAAAC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGAGGGACTGGCCGGATGACACTGTTGCTCCCTGCACGGAGTTGCAAAC  350

seq1  CCCCTCAGCTCCTTCACTCCCTTCTCTAACTCCTCCATCTGGGGCCCTGC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCCTCAGCTCCTTCACTCCCTTCTCTAACTCCTCCATCTGGGGCCCTGC  400

seq1  GCTCAGTCCAATGGTTGGCTGCGAGCATCCGCCTCTGTATTTGTCAGGCT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTCAGTCCAATGGTTGGCTGCGAGCATCCGCCTCTGTATTTGTCAGGCT  450

seq1  CTCTGAGGATTCGAACTCAGACTCTCATGCTCATTTGGCAAACACTGAAG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTGAGGATTCGAACTCAGACTCTCATGCTCATTTGGCAAACACTGAAG  500

seq1  AGTTATTTCACAGGTATGTGGTCAGACATTTTTTTAAAAGAGACATTTTG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTATTTCACAGGTATGTGGTCAGACATTTTTTTAAAAGAGACATTTTG  550

seq1  GTTTTTAGATTTATGCCAAACTCCAATTTACCGTGTCCCTATAACAGCAG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTTTAGATTTATGCCAAACTCCAATTTACCGTGTCCCTATAACAGCAG  600

seq1  GAGAGAGCCCCCTCCCCCCGAGCTTTCCCAACCACTCCACTAAAGAAATC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAGAGCCCCCTCCCCCCGAGCTTTCCCAACCACTCCACTAAAGAAATC  650

seq1  CCCTCTCACAGGACTTGACATCAGGCAAGCGGAAGACCTGATGGACACAT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTCTCACAGGACTTGACATCAGGCAAGCGGAAGACCTGATGGACACAT  700

seq1  AAAACTGTTTATTCTAAAGAAACCCTCTATAAACA-TTCTGAAACCCTGT  749
      ||||||||||||||||||||||||||||||||||| ||||||||||||||
seq2  AAAACTGTTTATTCTAAAGAAACCCTCTATAAACATTTCTGAAACCCTGT  750

seq1  GTGCCAACAGCGTGAGCTGGTTATTGAAAGTCATGTGTGTATTATTCCAT  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGCCAACAGCGTGAGCTGGTTATTGAAAGTCATGTGTGTATTATTCCAT  800

seq1  TGCAAATTCTTTTTCTGCGTGGCTTCATTTCTCCTTTAAAATGCAGTGTT  849
      ||||||||||||||||||||||||||| ||||||| | |||||||||| |
seq2  TGCAAATTCTTTTTCTGCGTGGCTTCA-TTCTCCTATTAAATGCAGTG-T  848

seq1  TATTGTATTGGGT-GACTTAGCCAAAAATCCCATTTTAATATTTTACTAT  898
      ||||||||||||| ||||||||| |||||| |||||| ||| ||||||||
seq2  TATTGTATTGGGTGGACTTAGCC-AAAATCTCATTTT-ATA-TTTACTAT  895

seq1  ATTTACTTGACAAAGATGTCCAAAGGGAGC-CTGACTTCTGAGCAAGTGG  947
      ||||||||||||||||||||| |||||||| ||||||||||||| ||| |
seq2  ATTTACTTGACAAAGATGTCC-AAGGGAGCTCTGACTTCTGAGCTAGT-G  943

seq1  TAACTCTGGTTGCAGCCACAGAGTCCCGCGGGCCAGGCTCCTCAGATCTG  997
      | ||||||| ||||||  |  |||||  | ||||| |||||||||| |||
seq2  TTACTCTGG-TGCAGCACCGAAGTCC--CCGGCCA-GCTCCTCAGA-CTG  988

seq1  CCACCTGCTTTTGTCAAAGCCTTACAGGGTGATCTCAGCAG  1038
      |||||||| |||||| ||||| ||||||||||||| |||||
seq2  CCACCTGC-TTTGTC-AAGCC-TACAGGGTGATCT-AGCAG  1025

seq1: chr13_115512301_115512831
seq2: B6Ng01-136I09.g_70_600 (reverse)

seq1  CACACACACACACACACACACACACACTCATCCCTATGGAGACTCGTCAG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACACACACACACACACACACACACACTCATCCCTATGGAGACTCGTCAG  50

seq1  ATTTATTGATTGACACTATATAGCACTGACTCACTTGGTATTCACTGTGT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTATTGATTGACACTATATAGCACTGACTCACTTGGTATTCACTGTGT  100

seq1  AGTCCAGGCTGGCCTTCACCTAACAGCAATCTGCCCACCCCCCTGCTTCA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTCCAGGCTGGCCTTCACCTAACAGCAATCTGCCCACCCCCCTGCTTCA  150

seq1  ATCCTCTATGTGCTTGATACTATAGGAATGCACCCAATACCTAGTTCTAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCCTCTATGTGCTTGATACTATAGGAATGCACCCAATACCTAGTTCTAA  200

seq1  CTTTATTATAATGGACACTAAAGCAGGAAACGTATAAGTGAGTCTGGGAT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTATTATAATGGACACTAAAGCAGGAAACGTATAAGTGAGTCTGGGAT  250

seq1  ATACTAGTCACAGCACACTGAGGACACTACCTGGAAACATTGAATTTCTA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATACTAGTCACAGCACACTGAGGACACTACCTGGAAACATTGAATTTCTA  300

seq1  AGCACTACTGTTTTCAACTCTAGATAGTGATGTGAAGTACTCATCTCTTT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCACTACTGTTTTCAACTCTAGATAGTGATGTGAAGTACTCATCTCTTT  350

seq1  TATGGTATCCAGGTAATAGGCACATATGCGAATCAACAGGAGCCTTAAGG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGGTATCCAGGTAATAGGCACATATGCGAATCAACAGGAGCCTTAAGG  400

seq1  AGAGAAGGACGAAAGCTTTAGGCCAAAGAGATGATCCGTCACTTTCAAGA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGAAGGACGAAAGCTTTAGGCCAAAGAGATGATCCGTCACTTTCAAGA  450

seq1  ATAAAAGACCACAAAAATGAGATTTTCATAATCCCTCTATCAGGAACTGT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAAAGACCACAAAAATGAGATTTTCATAATCCCTCTATCAGGAACTGT  500

seq1  ACAGGTATGGGCCTCAAAGCCTTAAGAATTC  531
      |||||||||||||||||||||||||||||||
seq2  ACAGGTATGGGCCTCAAAGCCTTAAGAATTC  531