BAC Information

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BAC

Clone NameB6Ng01-136O13
Chromosome13 (Build37)
Map Location 74,618,585 - 74,731,142
singlet/doubletdoublet
Overlap geneBC012278, LOC434490
Upstream geneAytl2, Slc6a3, Clptm1l, Tert, Slc6a18, Slc6a19, Slc12a7, Nkd2, EG666360, Trip13, Brd9, Zdhhc11, LOC100042909, 2900041A09Rik, LOC621824, Cep72, Slc9a3, Exoc3, Ahrr, Pdcd6, Sdha, Ccdc127, AI595366, Zfp72, LOC666670, LOC634386, LOC100042547, LOC666683, LOC547136
Downstream geneArts1, Cast, LOC622204, EG544954, Pcsk1, LOC672443, LOC666764, LOC100042606
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-136O13.bB6Ng01-136O13.g
ACCDH936559DH936560
length7461,036
definitionDH936559|Mus musculus domesticus DNA, BAC clone: B6Ng01-136O13, 5' end.DH936560|Mus musculus domesticus DNA, BAC clone: B6Ng01-136O13, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(74,618,585 - 74,619,156)(74,730,097 - 74,731,142)
sequence
gaattctttcatgcctgcaaagataattgggccatgttaaagcttcacca
tattcaaacgttttaatagttttatgaattttataaattggtctaatggt
aaagatgaatcagatcttaaggttttatcactttgtttatgttcatggtg
ttcctccttattatgggttattttacacttttgaagaaatccatcatggt
aagagcatttactacatggcttacatttataaaatcctttttgtatataa
gatttttacaggaagtatttcgcatatgtgaagaacaatggaacaactca
aaaccttaccacattgactgcattcataatttttcatacagtacgagtca
aaccacatttgcaaagtgagccaggacaaagagaagaattgccaaatacc
tagaaccttagatattttctgcactggaactttgggtatattcccagtaa
cctcagaaaaccaattaattgcaaacttgtatcatattcagatagtctac
caaaggtataatactacatatcttctcattgtttttagacagaaacaggg
aaatcacctctttcaattttcctatgttcacatggcttttatccattgtg
acacatgatatatgtattaaaagagactaacaaatgaaaaggtcattcac
agtttgactctttgctctcatagacagtggaatatggattaagtttcttt
attacaacatctgactctcataaactgcctctcataacttagcatg
gaattcaaaacagaggaactcaaatggctgagaaacacctaaagaaatgg
ccttggtaatcagagaaattcaaatcaaaacaactgtgagattccacctt
acaccaatcagaatggctaagatcaaaaactcaggttggcaacacatgtt
ggctgtaccccatttttttcttttttgctttttctagacagggtttctct
gtgtagccctgcttgtcctggaactcactttgtagaccaggatggcctcg
aactcagaaatccaaccgcctcaccacccaagttctgtgtatcccatttt
taatagggttatttgattctctgtagtccaacttcttgagttctttgtat
atattggatattaaccctctgtcacatgttggattggtaaagatcttttc
ccaatctgttgttgccattttggcctaatgacagtgtcctttgccaagca
gaagctttgcaattttatgaggttccatttatctattgttgatcttagag
cataagccattggtgttttgttcaggacatttctccctgtgcccatgaga
ttgaggctcttctccactttctcttgtattagtttcaatgtaaacctatt
tcccatcagggaattccgggttcttgcatagcccccatatgactttcctt
gtggcaggaaggaagatgctgatactatgaaaaagaggactgggaaggca
gatgagagaagagacaggagctgatttcacatagcacagcaaaatctttg
tgctaaccctgagcctaaccctaaacctgtaaccctaaccagtctaaccc
taatctaaacaatctttatcttaatcctaaccctctaatcccctaactct
aaccctgcaccctgtagggagttttcttaattattcgttttgaagtgaga
aacccttgctatatcttggtctttagagagtttagatccacctttaatcc
agctaaagtctttctgaaacctacatacataaaggaccttaacaggagtt
ctttcaatgtctactctttccctatatattttagca
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr13_74618585_74619156
seq2: B6Ng01-136O13.b_46_617

seq1  GAATTCTTTCATGCCTGCAAAGATAATTGGGCCATGTTAAAGCTTCACCA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTTCATGCCTGCAAAGATAATTGGGCCATGTTAAAGCTTCACCA  50

seq1  TATTCAAACGTTTTAATAGTTTTATGAATTTTATAAATTGGTCTAATGGT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTCAAACGTTTTAATAGTTTTATGAATTTTATAAATTGGTCTAATGGT  100

seq1  AAAGATGAATCAGATCTTAAGGTTTTATCACTTTGTTTATGTTCATGGTG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGATGAATCAGATCTTAAGGTTTTATCACTTTGTTTATGTTCATGGTG  150

seq1  TTCCTCCTTATTATGGGTTATTTTACACTTTTGAAGAAATCCATCATGGT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCTCCTTATTATGGGTTATTTTACACTTTTGAAGAAATCCATCATGGT  200

seq1  AAGAGCATTTACTACATGGCTTACATTTATAAAATCCTTTTTGTATATAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAGCATTTACTACATGGCTTACATTTATAAAATCCTTTTTGTATATAA  250

seq1  GATTTTTACAGGAAGTATTTCGCATATGTGAAGAACAATGGAACAACTCA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTTTTACAGGAAGTATTTCGCATATGTGAAGAACAATGGAACAACTCA  300

seq1  AAACCTTACCACATTGACTGCATTCATAATTTTTCATACAGTACGAGTCA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACCTTACCACATTGACTGCATTCATAATTTTTCATACAGTACGAGTCA  350

seq1  AACCACATTTGCAAAGTGAGCCAGGACAAAGAGAAGAATTGCCAAATACC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACCACATTTGCAAAGTGAGCCAGGACAAAGAGAAGAATTGCCAAATACC  400

seq1  TAGAACCTTAGATATTTTCTGCACTGGAACTTTGGGTATATTCCCAGTAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGAACCTTAGATATTTTCTGCACTGGAACTTTGGGTATATTCCCAGTAA  450

seq1  CCTCAGAAAACCAATTAATTGCAAACTTGTATCATATTCAGATAGTCTAC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCAGAAAACCAATTAATTGCAAACTTGTATCATATTCAGATAGTCTAC  500

seq1  CAAAGGTATAATACTACATATCTTCTCATTGTTTTTAGACAGAAACAGGG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAGGTATAATACTACATATCTTCTCATTGTTTTTAGACAGAAACAGGG  550

seq1  AAATCACCTCTTTCAATTTTCC  572
      ||||||||||||||||||||||
seq2  AAATCACCTCTTTCAATTTTCC  572

seq1: chr13_74730097_74731142
seq2: B6Ng01-136O13.g_68_1103 (reverse)

seq1  TGCTAAAAATATATAGGGAAAGAAGTAGACATTTGAAAGAACTTCCCTGT  50
      |||| ||||||||||||||||| |||||||| |||||||||||  |||| 
seq2  TGCT-AAAATATATAGGGAAAG-AGTAGACA-TTGAAAGAACT--CCTG-  44

seq1  TTAAGGTCCTTTATGTATGTAGGTTTCAGAAAGACCTTTAGCCTGGATTA  100
      |||||||||||||||||||||||||||||||||| |||||| ||||||||
seq2  TTAAGGTCCTTTATGTATGTAGGTTTCAGAAAGA-CTTTAG-CTGGATTA  92

seq1  AAGGTGGATCTTAAACTCTCTAAAGACCAAGATATAGCAAGGGTTTCTCA  150
      |||||||||| |||||||||||||||||||||||||||||||||||||||
seq2  AAGGTGGATC-TAAACTCTCTAAAGACCAAGATATAGCAAGGGTTTCTCA  141

seq1  CTTCAAAACGAATAATTAAGAAAACTCCCTTACAGGGTGCAGGGTTAGAG  200
      ||||||||||||||||||||||||||||| ||||||||||||||||||||
seq2  CTTCAAAACGAATAATTAAGAAAACTCCC-TACAGGGTGCAGGGTTAGAG  190

seq1  TTAGGGGATTAGAGGGTTAGGATTAAGATAAAGATTGTTTAGATTAGGGT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGGGGATTAGAGGGTTAGGATTAAGATAAAGATTGTTTAGATTAGGGT  240

seq1  TAGACTGGTTAGGGTTACAGGTTTAGGGTTAGGCTCAGGGTTAGCACAAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGACTGGTTAGGGTTACAGGTTTAGGGTTAGGCTCAGGGTTAGCACAAA  290

seq1  GATTTTGCTGTGCTATGTGAAATCAGCTCCTGTCTCTTCTCTCATCTGCC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTTTGCTGTGCTATGTGAAATCAGCTCCTGTCTCTTCTCTCATCTGCC  340

seq1  TTCCCAGTCCTCTTTTTCATAGTATCAGCATCTTCCTTCCTGCCACAAGG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCCAGTCCTCTTTTTCATAGTATCAGCATCTTCCTTCCTGCCACAAGG  390

seq1  AAAGTCATATGGGGGCTATGCAAGAACCCGGAATTCCCTGATGGGAAATA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGTCATATGGGGGCTATGCAAGAACCCGGAATTCCCTGATGGGAAATA  440

seq1  GGTTTACATTGAAACTAATACAAGAGAAAGTGGAGAAGAGCCTCAATCTC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTTTACATTGAAACTAATACAAGAGAAAGTGGAGAAGAGCCTCAATCTC  490

seq1  ATGGGCACAGGGAGAAATGTCCTGAACAAAACACCAATGGCTTATGCTCT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGGCACAGGGAGAAATGTCCTGAACAAAACACCAATGGCTTATGCTCT  540

seq1  AAGATCAACAATAGATAAATGGAACCTCATAAAATTGCAAAGCTTCTGCT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGATCAACAATAGATAAATGGAACCTCATAAAATTGCAAAGCTTCTGCT  590

seq1  TGGCAAAGGACACTGTCATTAGGCCAAAATGGCAACAACAGATTGGGAAA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCAAAGGACACTGTCATTAGGCCAAAATGGCAACAACAGATTGGGAAA  640

seq1  AGATCTTTACCAATCCAACATGTGACAGAGGGTTAATATCCAATATATAC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATCTTTACCAATCCAACATGTGACAGAGGGTTAATATCCAATATATAC  690

seq1  AAAGAACTCAAGAAGTTGGACTACAGAGAATCAAATAACCCTATTAAAAA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGAACTCAAGAAGTTGGACTACAGAGAATCAAATAACCCTATTAAAAA  740

seq1  TGGGATACACAGAACTTGGGTGGTGAGGCGGTTGGATTTCTGAGTTCGAG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGATACACAGAACTTGGGTGGTGAGGCGGTTGGATTTCTGAGTTCGAG  790

seq1  GCCATCCTGGTCTACAAAGTGAGTTCCAGGACAAGCAGGGCTACACAGAG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCATCCTGGTCTACAAAGTGAGTTCCAGGACAAGCAGGGCTACACAGAG  840

seq1  AAACCCTGTCTAGAAAAAGCAAAAAAGAAAAAAATGGGGTACAGCCAACA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACCCTGTCTAGAAAAAGCAAAAAAGAAAAAAATGGGGTACAGCCAACA  890

seq1  TGTGTTGCCAACCTGAGTTTTTGATCTTAGCCATTCTGATTGGTGTAAGG  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGTTGCCAACCTGAGTTTTTGATCTTAGCCATTCTGATTGGTGTAAGG  940

seq1  TGGAATCTCACAGTTGTTTTGATTTGAATTTCTCTGATTACCAAGGCCAT  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGAATCTCACAGTTGTTTTGATTTGAATTTCTCTGATTACCAAGGCCAT  990

seq1  TTCTTTAGGTGTTTCTCAGCCATTTGAGTTCCTCTGTTTTGAATTC  1046
      ||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTTTAGGTGTTTCTCAGCCATTTGAGTTCCTCTGTTTTGAATTC  1036