BAC Information

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BAC

Clone NameB6Ng01-137B06
Chromosome13 (Build37)
Map Location 76,620,318 - 76,788,381
singlet/doubletdoublet
Overlap geneMctp1
Upstream geneLOC672443, LOC666764, LOC100042606, LOC100042986, Ell2, LOC666786, Glrx, Rhobtb3, LOC666553, LOC622313, Spata9, Rfesd, LOC100043008, Gpr150, Arsk, AK129128, Gm276
Downstream geneLOC666603, EG666607, Ankrd32, 2210408I21Rik, LOC631139, LOC675063
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-137B06.bB6Ng01-137B06.g
ACCDH936687DH936688
length5741,048
definitionDH936687|Mus musculus domesticus DNA, BAC clone: B6Ng01-137B06, 5' end.DH936688|Mus musculus domesticus DNA, BAC clone: B6Ng01-137B06, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(76,620,318 - 76,620,896)(76,787,339 - 76,788,381)
sequence
tgaactgaggagtcattacctcgcctttagcctagttgtgtatgagcctt
ctctcagattctaaactgctccaatcctgtatctatgggcatttggattc
taatcacaaccttttatagtacctggctgtctactgacactcattgtgct
gtctgctcctgaaaccctttatgctccctccatttcttctcaatttccgg
tgcatcatttgattccacgttttcctctggagaaatacaggccaccaact
gctctgtgaccagggtctggaaagctccatcatccatacattgcatcttt
gccttttatcaaaatagtgttgccctcacttcctgtctatcttgctgcct
ccttgcctaacctccttttagaaatagatgtgaagtattgcttcattcct
ttgtaagaagaatttttttctattttttaaattatctttttcttaaatat
tttaaaaatataattatataatttccatcttctttttcctccctccctcc
aacatcttcaatgccctccctcaaattcatggcctctctttctatcatta
ttagtgtgtgtgtgtgtgtgtgtg
gaattctggaattttggtttctttaaaaaacacataaatagctgggtggt
ggtggcactcaagagacagaggcaaaggcagaggcaagtggatctctgag
tttgaggccatccaagtctacagagagagctccaaaacacttagagctaa
aacagagaagcctgtggggtaaggggaaccattatcaacaaagactggga
agattgagtgggttcataagacctgaggacaataggagtttcacctggtt
ccaaacagggctcctgatctggagctcatgactacaacccccatgggaag
actgtaaccactagtcacttagcacagagttctatgccagtgaggtatct
atataggccagcccggagggtttagccaataagcttcccttcctggacat
tccttcctgcaaaaggaaatctctggctcacactaagtgaagagtatgca
cccattttccatgatgaacaatgaataaacagtgtggacaaacaaggact
gtctctctcttcaagacctaccatgggggtaaagccttcgtcatacagag
cctcaccacctaatctcagcagaaggcccctctgcattcccagacactca
cccccagagctaagccagagttccccctctccctgacctggcctaatcac
aggccccctttgttcccaactccacatgatttctagtaatgattggatgc
ctgggagtttgggaacccctgcctcctcagcctcagcttgcctcatctgg
gctgtgccccccacacttagactgcattctctctcccacccctgagtggt
gcattggcacttcccaaaataaaaggaaaaacaatggccagtttcagagt
acccagcatacctcaatgacttggtgaatatgattctacactaacaaaat
tggaacttatagggatgttgactgtgatgacaaattggtattctttccat
tcccctgtgaatagtaatgggaaggttcagagatataggccatctggatc
ttcttgcaggatatgaaggcagcattggaataaataataagggtgaat
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr13_76620318_76620896
seq2: B6Ng01-137B06.b_48_627

seq1  GAATTCTGAACTGAGGAGTCATTACCT-GCCTTTAGCCTAGTTGTGTATG  49
      ||||||||||||||||||||||||||| ||||||||||||||||||||||
seq2  GAATTCTGAACTGAGGAGTCATTACCTCGCCTTTAGCCTAGTTGTGTATG  50

seq1  AGCCTTCTCTCAGATTCTAAACTGCTCCAATCCTGTATCTATGGGCATTT  99
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCTTCTCTCAGATTCTAAACTGCTCCAATCCTGTATCTATGGGCATTT  100

seq1  GGATTCTAATCACAACCTTTTATAGTACCTGGCTGTCTACTGACACTCAT  149
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGATTCTAATCACAACCTTTTATAGTACCTGGCTGTCTACTGACACTCAT  150

seq1  TGTGCTGTCTGCTCCTGAAACCCTTTATGCTCCCTCCATTTCTTCTCAAT  199
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGCTGTCTGCTCCTGAAACCCTTTATGCTCCCTCCATTTCTTCTCAAT  200

seq1  TTCCGGTGCATCATTTGATTCCACGTTTTCCTCTGGAGAAATACAGGCCA  249
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCGGTGCATCATTTGATTCCACGTTTTCCTCTGGAGAAATACAGGCCA  250

seq1  CCAACTGCTCTGTGACCAGGGTCTGGAAAGCTCCATCATCCATACATTGC  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAACTGCTCTGTGACCAGGGTCTGGAAAGCTCCATCATCCATACATTGC  300

seq1  ATCTTTGCCTTTTATCAAAATAGTGTTGCCCTCACTTCCTGTCTATCTTG  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTTTGCCTTTTATCAAAATAGTGTTGCCCTCACTTCCTGTCTATCTTG  350

seq1  CTGCCTCCTTGCCTAACCTCCTTTTAGAAATAGATGTGAAGTATTGCTTC  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCCTCCTTGCCTAACCTCCTTTTAGAAATAGATGTGAAGTATTGCTTC  400

seq1  ATTCCTTTGTAAGAAGAATTTTTTTCTATTTTTTAAATTATCTTTTTCTT  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCCTTTGTAAGAAGAATTTTTTTCTATTTTTTAAATTATCTTTTTCTT  450

seq1  AAATATTTTAAAAATATAATTATATAATTTCCATCTTCTTTTTCCTCCCT  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATATTTTAAAAATATAATTATATAATTTCCATCTTCTTTTTCCTCCCT  500

seq1  CCCTCCAACATCTTCAATGCCCTCCCTCAAATTCATGGCCTCTCTTTCTA  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTCCAACATCTTCAATGCCCTCCCTCAAATTCATGGCCTCTCTTTCTA  550

seq1  TCATTATTAGTGTGTGTGTGTGTGTGTGTG  579
      ||||||||||||||||||||||||||||||
seq2  TCATTATTAGTGTGTGTGTGTGTGTGTGTG  580

seq1: chr13_76787339_76788381
seq2: B6Ng01-137B06.g_70_1109 (reverse)

seq1  TTATTATTTATTACAATGCTGCCTTCATATACTGCCAAGAAAGATCCAGA  50
      |||||||||||| ||||||||||||||||| ||| |||| ||||||||||
seq2  TTATTATTTATTCCAATGCTGCCTTCATATCCTG-CAAG-AAGATCCAGA  48

seq1  T-GCCTATATTCTCTGAACC-TCACATTACATATTCACAGGGGAATGGAA  98
      | ||||||| |||||||||| || |||||| |||||||||||||||||||
seq2  TGGCCTATA-TCTCTGAACCTTCCCATTAC-TATTCACAGGGGAATGGAA  96

seq1  AGAATACCACATTTGTCATCACAGTCAACATCCCTATAATGTTCCAATTT  148
      ||||||||| ||||||||||||||||||||||||||||| ||||||||||
seq2  AGAATACCA-ATTTGTCATCACAGTCAACATCCCTATAA-GTTCCAATTT  144

seq1  TGTTAGTGTAGAATCATATTCACC-AGTCATTGAGGTATGCTGGGTACTC  197
      |||||||||||||||||||||||| |||||||||||||||||||||||||
seq2  TGTTAGTGTAGAATCATATTCACCAAGTCATTGAGGTATGCTGGGTACTC  194

seq1  TG-AACTGGCCATTGTTTTTCTTTTTATTTGTGGGAAGTGCCAATGCACC  246
      || |||||||||||||||||| |||||||| |||||||||||||||||||
seq2  TGAAACTGGCCATTGTTTTTCCTTTTATTT-TGGGAAGTGCCAATGCACC  243

seq1  ACTCAGGGGTGGGAGAGAGAATGCAGTCTAAGTGTGGGGGGCACAGCCCA  296
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCAGGGGTGGGAGAGAGAATGCAGTCTAAGTGTGGGGGGCACAGCCCA  293

seq1  GATGAGGCAAGCTGAGGCTGAGGAGGCAGGGGTTCCCAAACTCCCAGGCA  346
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGAGGCAAGCTGAGGCTGAGGAGGCAGGGGTTCCCAAACTCCCAGGCA  343

seq1  TCCAATCATTACTAGAAATCATGTGGAGTTGGGAACAAAGGGGGCCTGTG  396
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCAATCATTACTAGAAATCATGTGGAGTTGGGAACAAAGGGGGCCTGTG  393

seq1  ATTAGGCCAGGTCAGGGAGAGGGGGAACTCTGGCTTAGCTCTGGGGGTGA  446
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTAGGCCAGGTCAGGGAGAGGGGGAACTCTGGCTTAGCTCTGGGGGTGA  443

seq1  GTGTCTGGGAATGCAGAGGGGCCTTCTGCTGAGATTAGGTGGTGAGGCTC  496
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTCTGGGAATGCAGAGGGGCCTTCTGCTGAGATTAGGTGGTGAGGCTC  493

seq1  TGTATGACGAAGGCTTTACCCCCATGGTAGGTCTTGAAGAGAGAGACAGT  546
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTATGACGAAGGCTTTACCCCCATGGTAGGTCTTGAAGAGAGAGACAGT  543

seq1  CCTTGTTTGTCCACACTGTTTATTCATTGTTCATCATGGAAAATGGGTGC  596
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTGTTTGTCCACACTGTTTATTCATTGTTCATCATGGAAAATGGGTGC  593

seq1  ATACTCTTCACTTAGTGTGAGCCAGAGATTTCCTTTTGCAGGAAGGAATG  646
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATACTCTTCACTTAGTGTGAGCCAGAGATTTCCTTTTGCAGGAAGGAATG  643

seq1  TCCAGGAAGGGAAGCTTATTGGCTAAACCCTCCGGGCTGGCCTATATAGA  696
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCAGGAAGGGAAGCTTATTGGCTAAACCCTCCGGGCTGGCCTATATAGA  693

seq1  TACCTCACTGGCATAGAACTCTGTGCTAAGTGACTAGTGGTTACAGTCTT  746
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACCTCACTGGCATAGAACTCTGTGCTAAGTGACTAGTGGTTACAGTCTT  743

seq1  CCCATGGGGGTTGTAGTCATGAGCTCCAGATCAGGAGCCCTGTTTGGAAC  796
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCATGGGGGTTGTAGTCATGAGCTCCAGATCAGGAGCCCTGTTTGGAAC  793

seq1  CAGGTGAAACTCCTATTGTCCTCAGGTCTTATGAACCCACTCAATCTTCC  846
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGTGAAACTCCTATTGTCCTCAGGTCTTATGAACCCACTCAATCTTCC  843

seq1  CAGTCTTTGTTGATAATGGTTCCCCTTACCCCACAGGCTTCTCTGTTTTA  896
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTCTTTGTTGATAATGGTTCCCCTTACCCCACAGGCTTCTCTGTTTTA  893

seq1  GCTCTAAGTGTTTTGGAGCTCTCTCTGTAGACTTGGATGGCCTCAAACTC  946
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTCTAAGTGTTTTGGAGCTCTCTCTGTAGACTTGGATGGCCTCAAACTC  943

seq1  AGAGATCCACTTGCCTCTGCCTTTGCCTCTGTCTCTTGAGTGCCACCACC  996
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGATCCACTTGCCTCTGCCTTTGCCTCTGTCTCTTGAGTGCCACCACC  993

seq1  ACCCAGCTATTTATGTGTTTTTTAAAGAAACCAAAATTCCAGAATTC  1043
      |||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCCAGCTATTTATGTGTTTTTTAAAGAAACCAAAATTCCAGAATTC  1040