BAC Information

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BAC

Clone NameB6Ng01-137N18
Chromosome13 (Build37)
Map Location 115,524,883 - 115,660,891
singlet/doubletdoublet
Overlap geneMocs2, Itga2
Upstream geneEG632832, LOC622701, LOC100040927, Arl15, A430090L17Rik, Ndufs4, LOC100040958, Fst, 4930467J12Rik
Downstream geneLOC100040975, Itga1, Pelo, LOC100041023, LOC547402, LOC100041045
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-137N18.bB6Ng01-137N18.g
ACCDH937265DH937266
length1,1591,186
definitionDH937265|Mus musculus domesticus DNA, BAC clone: B6Ng01-137N18, 5' end.DH937266|Mus musculus domesticus DNA, BAC clone: B6Ng01-137N18, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(115,659,701 - 115,660,891)(115,524,883 - 115,526,097)
sequence
gaattcctttgccttaaaggtgatttgtcttaatcttcatttcttcaatc
ttttcaggatattctgatgttaggtgcagtgggggcttttgactggagtg
gaactcttgtccaggagacatctcacaagcccgtgatctttcctaaacaa
gcctttgaccaggttctgcaggatagaaaccacagttcgtttttaggtga
ggcacagcaatagttggctcagaaaactcagggtttggttggttgttttt
ttgttttgcttttgtttttgtttttccctctttgaactctcagttcagct
cagacagtgagctctcctctctcattaatgtggttttaatccagtagtta
cctcttggccagttgggtctccaaaacagaatttgttcctaaaacataat
acactgagcagtagcctcctgttgttttggagttcttagggtgtttgtta
ttgttggtacacatatgatgagcatccagtgatgttcactacctgaggga
gattacttatattctataagtaaggatttgaaaatcatttcagagccagt
gactttaatgtttattaacttcaacaacctagcaaatgactagtccagaa
ttcaaacccaggcctctaactccagggcctgtattctttccattaaatag
caacaccacttaatttcatttgctgattcattaaactaaaggacagtatc
tttgttttgtttcctgttgctataataagatatggagacaaaggcaactc
aaaggaaaaagggtttatttggctcacaattctaggttgcagtccatcac
tgcaggtaaatcaaggcaacaggaacttgaagcaactattcacataatat
acacagtcagaagctgagagaagtggtttaatggatgcgtgcttgctctt
agctcagttcctctactcttactcagttcagatccctgcctaggaatgat
gccacccacagtgggcgtccatcccattactcaatatgcatcaacttatt
ctcatagaatatcgtggagcacactaatctaaacaccctactgagactct
cttccagtataatagaattatgtcagtgacctaaatggacattagcaagc
ttgtagtaagtagctagaagtttccgaaccggagaaggcacgttaagtct
gtctatgct
gaattcatagtgtgtgtcatttatgaatgagcaggagaaaagaaaaggca
gtattaattaagtacagataaaaatgccaatggaagctagcatgctatag
ggtatttggaggcagctcgtatttaaattttgcctgaggttgatgagtgg
gctgatctgttatggggacacgttgtgtaagggaagttgaaaggatgtta
gaaaatagtttaggaataggggagccaaatgacaaatagaaattgttcct
ctattaagctttgtcatgctcaaagggcaacattttaaaacatgttcgtt
ttattacatccgctaaactagaatagcttactttgccgctcactccacca
ctgcagtaccgtagttgagtctttcctcatcttatgttcagggaaattcc
agtcaaattaggagaactgagatcctatcttctataatcactgttcttgg
agggaataaaaagagaagaagatttattgatgaccataatttcctctacg
taatcgctgagaaaatgtctcatttccaggaacactgacacaaagagaga
gagctcatacattgcggatgagtcagggttgggcgaggaagcctacaaag
accttttcctgtagtgagtcatgtggccatggcatgttcggtggcaggtc
ttctaattgcttttcgtaatcagcagttccagtgggcagctcacactttg
cagacatgagacacagaaaaatgtttgtgctgttacataacagttagaat
ttgcttcccctcttctcaaacctcagggccttcctgtcgtctctgtatta
gaaatgaacttttaaaacaaccactacttctgttgcattttgttctctgc
ttctaattataaacctgtgtaactgtttcgttgtagtttatctcaaaaca
ataagtttagaatgctctgaagttcttaagtactttgtaaataggaccca
cctacttccatgtactagaatggtctctagagaataaaatcaatagcatg
acattcactataagacgcatattgactgcctaccagtaggctagggattt
cagcatgaccattctgcatcttggagaggcaaagaattcagtagctgctc
gtcatgaagactggaatttaaactctctttcctcaagtcctcaagtccag
gactcacaggctgttaccttcagggaatgatctttc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr13_115659701_115660891
seq2: B6Ng01-137N18.b_49_1207 (reverse)

seq1  AGCATAGACAGGACTTATAAAGCTGCC-TCT-CGGTTCTGGGATACTCTC  48
      |||||||||| |||||   ||  |||| ||| ||||||  ||| |||   
seq2  AGCATAGACA-GACTT---AACGTGCCTTCTCCGGTTC--GGAAACT---  41

seq1  TTTAGCTACTTACTTACAAGCCTTGCTAATTGTTCATATTAGTGGTCAAC  98
      | ||||||||||| |||||| |||||||| ||| ||| |||  |||||  
seq2  TCTAGCTACTTAC-TACAAG-CTTGCTAA-TGTCCAT-TTA--GGTCA--  83

seq1  TTGACATAA-TCTATTATTACTTGGGAAGAGAGTCTCAGTTAGGGGTTGT  147
       |||||||| ||||||| ||||  ||||||||||||||| |||||  |||
seq2  CTGACATAATTCTATTA-TACT--GGAAGAGAGTCTCAG-TAGGG--TGT  127

seq1  TTAGATTAGGTGTGCTCACGGATATATCTATGAGGAATTAAGTTGATTGC  197
      |||||||| ||||||||   ||||| ||||||||  | |||||||| |||
seq2  TTAGATTA-GTGTGCTCCACGATAT-TCTATGAG--AATAAGTTGA-TGC  172

seq1  ATTAATTGAGTAATTGGGATGGGACGCCCACTGTGGGTGGCATCATTCCT  247
      ||  ||||||||| |||||| |||||||||||||||||||||||||||| 
seq2  AT--ATTGAGTAA-TGGGAT-GGACGCCCACTGTGGGTGGCATCATTCC-  217

seq1  TAGGCAGGGGATCCTGAACTGAGTAAGAGTAGAGGAACTGAGCTAAGAGC  297
      |||||| ||||| |||||||||||||||||||||||||||||||||||||
seq2  TAGGCA-GGGAT-CTGAACTGAGTAAGAGTAGAGGAACTGAGCTAAGAGC  265

seq1  AAGCACGCATCCATTAAACCACTTCTCTCAGCTTCTGACTGTGTATATTA  347
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCACGCATCCATTAAACCACTTCTCTCAGCTTCTGACTGTGTATATTA  315

seq1  TGTGAATAGTTGCTTCAAGTTCCTGTTGCCTTGATTTACCTGCAGTGATG  397
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGAATAGTTGCTTCAAGTTCCTGTTGCCTTGATTTACCTGCAGTGATG  365

seq1  GACTGCAACCTAGAATTGTGAGCCAAATAAACCCTTTTTCCTTTGAGTTG  447
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACTGCAACCTAGAATTGTGAGCCAAATAAACCCTTTTTCCTTTGAGTTG  415

seq1  CCTTTGTCTCCATATCTTATTATAGCAACAGGAAACAAAACAAAGATACT  497
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTTGTCTCCATATCTTATTATAGCAACAGGAAACAAAACAAAGATACT  465

seq1  GTCCTTTAGTTTAATGAATCAGCAAATGAAATTAAGTGGTGTTGCTATTT  547
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCCTTTAGTTTAATGAATCAGCAAATGAAATTAAGTGGTGTTGCTATTT  515

seq1  AATGGAAAGAATACAGGCCCTGGAGTTAGAGGCCTGGGTTTGAATTCTGG  597
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGGAAAGAATACAGGCCCTGGAGTTAGAGGCCTGGGTTTGAATTCTGG  565

seq1  ACTAGTCATTTGCTAGGTTGTTGAAGTTAATAAACATTAAAGTCACTGGC  647
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTAGTCATTTGCTAGGTTGTTGAAGTTAATAAACATTAAAGTCACTGGC  615

seq1  TCTGAAATGATTTTCAAATCCTTACTTATAGAATATAAGTAATCTCCCTC  697
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGAAATGATTTTCAAATCCTTACTTATAGAATATAAGTAATCTCCCTC  665

seq1  AGGTAGTGAACATCACTGGATGCTCATCATATGTGTACCAACAATAACAA  747
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTAGTGAACATCACTGGATGCTCATCATATGTGTACCAACAATAACAA  715

seq1  ACACCCTAAGAACTCCAAAACAACAGGAGGCTACTGCTCAGTGTATTATG  797
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACCCTAAGAACTCCAAAACAACAGGAGGCTACTGCTCAGTGTATTATG  765

seq1  TTTTAGGAACAAATTCTGTTTTGGAGACCCAACTGGCCAAGAGGTAACTA  847
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTAGGAACAAATTCTGTTTTGGAGACCCAACTGGCCAAGAGGTAACTA  815

seq1  CTGGATTAAAACCACATTAATGAGAGAGGAGAGCTCACTGTCTGAGCTGA  897
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGATTAAAACCACATTAATGAGAGAGGAGAGCTCACTGTCTGAGCTGA  865

seq1  ACTGAGAGTTCAAAGAGGGAAAAACAAAAACAAAAGCAAAACAAAAAAAC  947
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGAGAGTTCAAAGAGGGAAAAACAAAAACAAAAGCAAAACAAAAAAAC  915

seq1  AACCAACCAAACCCTGAGTTTTCTGAGCCAACTATTGCTGTGCCTCACCT  997
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACCAACCAAACCCTGAGTTTTCTGAGCCAACTATTGCTGTGCCTCACCT  965

seq1  AAAAACGAACTGTGGTTTCTATCCTGCAGAACCTGGTCAAAGGCTTGTTT  1047
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAACGAACTGTGGTTTCTATCCTGCAGAACCTGGTCAAAGGCTTGTTT  1015

seq1  AGGAAAGATCACGGGCTTGTGAGATGTCTCCTGGACAAGAGTTCCACTCC  1097
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAAAGATCACGGGCTTGTGAGATGTCTCCTGGACAAGAGTTCCACTCC  1065

seq1  AGTCAAAAGCCCCCACTGCACCTAACATCAGAATATCCTGAAAAGATTGA  1147
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTCAAAAGCCCCCACTGCACCTAACATCAGAATATCCTGAAAAGATTGA  1115

seq1  AGAAATGAAGATTAAGACAAATCACCTTTAAGGCAAAGGAATTC  1191
      ||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAATGAAGATTAAGACAAATCACCTTTAAGGCAAAGGAATTC  1159

seq1: chr13_115524883_115526097
seq2: B6Ng01-137N18.g_70_1255

seq1  GAATTCATAGTGTGTGTCATTTATGAATGAGCAGGAGAAAAGAAAAGGCA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCATAGTGTGTGTCATTTATGAATGAGCAGGAGAAAAGAAAAGGCA  50

seq1  GTATTAATTAAGTACAGATAAAAATGCCAATGGAAGCTAGCATGCTATAG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTATTAATTAAGTACAGATAAAAATGCCAATGGAAGCTAGCATGCTATAG  100

seq1  GGTATTTGGAGGCAGCTCGTATTTAAATTTTGCCTGAGGTTGATGAGTGG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTATTTGGAGGCAGCTCGTATTTAAATTTTGCCTGAGGTTGATGAGTGG  150

seq1  GCTGATCTGTTATGGGGACACGTTGTGTAAGGGAAGTTGAAAGGATGTTA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGATCTGTTATGGGGACACGTTGTGTAAGGGAAGTTGAAAGGATGTTA  200

seq1  GAAAATAGTTTAGGAATAGGGGAGCCAAATGACAAATAGAAATTGTTCCT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAATAGTTTAGGAATAGGGGAGCCAAATGACAAATAGAAATTGTTCCT  250

seq1  CTATTAAGCTTTGTCATGCTCAAAGGGCAACATTTTAAAACATGTTCGTT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATTAAGCTTTGTCATGCTCAAAGGGCAACATTTTAAAACATGTTCGTT  300

seq1  TTATTACATCCGCTAAACTAGAATAGCTTACTTTGCCGCTCACTCCACCA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATTACATCCGCTAAACTAGAATAGCTTACTTTGCCGCTCACTCCACCA  350

seq1  CTGCAGTACCGTAGTTGAGTCTTTCCTCATCTTATGTTCAGGGAAATTCC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCAGTACCGTAGTTGAGTCTTTCCTCATCTTATGTTCAGGGAAATTCC  400

seq1  AGTCAAATTAGGAGAACTGAGATCCTATCTTCTATAATCACTGTTCTTGG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTCAAATTAGGAGAACTGAGATCCTATCTTCTATAATCACTGTTCTTGG  450

seq1  AGGGAATAAAAAGAGAAGAAGATTTATTGATGACCATAATTTCCTCTACG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGAATAAAAAGAGAAGAAGATTTATTGATGACCATAATTTCCTCTACG  500

seq1  TAATCGCTGAGAAAATGTCTCATTTCCAGGAACACTGACACAAAGAGAGA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATCGCTGAGAAAATGTCTCATTTCCAGGAACACTGACACAAAGAGAGA  550

seq1  GAGCTCATACATTGCGGATGAGTCAGGGTTGGGCGAGGAAGCCTACAAAG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGCTCATACATTGCGGATGAGTCAGGGTTGGGCGAGGAAGCCTACAAAG  600

seq1  ACCTTTTCCTGTAGTGAGTCATGTGGCCATGGCATGTTCGGTGGCAGGTC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTTTTCCTGTAGTGAGTCATGTGGCCATGGCATGTTCGGTGGCAGGTC  650

seq1  TTCTAATTGCTTTTCGTAATCAGCAGTTCCAGTGGGCAGCTCACACTTTG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTAATTGCTTTTCGTAATCAGCAGTTCCAGTGGGCAGCTCACACTTTG  700

seq1  CAGACATGAGACACAGAAAAATGTTTGTGCTGTTACATAACAGTTAGAAT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGACATGAGACACAGAAAAATGTTTGTGCTGTTACATAACAGTTAGAAT  750

seq1  TTGCTTCCCCTCTTCTCAAACCTCAGGGCCTTCCTGTCGTCTCTGTATTA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGCTTCCCCTCTTCTCAAACCTCAGGGCCTTCCTGTCGTCTCTGTATTA  800

seq1  GAAATGAACTTTTAAAACAACCACTACTTCTGTTGCATTTTGTTCTCTGC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAATGAACTTTTAAAACAACCACTACTTCTGTTGCATTTTGTTCTCTGC  850

seq1  TTCTAATTATAAACCTGTGTAACTGTTTCGTTGTAGTTTATCTC-AAACA  899
      |||||||||||||||||||||||||||||||||||||||||||| |||||
seq2  TTCTAATTATAAACCTGTGTAACTGTTTCGTTGTAGTTTATCTCAAAACA  900

seq1  ATAAGTTTAGAATGCTCTGAAGTTCTTAAGTACTTTGTAAATAGGACCCA  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAGTTTAGAATGCTCTGAAGTTCTTAAGTACTTTGTAAATAGGACCCA  950

seq1  CCTACTTCCATGTACTAGGAATGGTTCTCTAGAGGAATAAAATCAATAGC  999
      ||||||||||||||||| |||||| |||||||| ||||||||||||||||
seq2  CCTACTTCCATGTACTA-GAATGG-TCTCTAGA-GAATAAAATCAATAGC  997

seq1  ATGGACATTCACTATAAAAGGACCCATATTGGACTGGCCTACACAGTAGG  1049
      || ||||||||||||||   ||| |||||| |||| |||||| ||||| |
seq2  AT-GACATTCACTATAA---GACGCATATT-GACT-GCCTAC-CAGTA-G  1039

seq1  GCTAGGGATTTCAGCAATGACCA-TCTGCATCTTGGAGAGGCAGAGAATT  1098
      ||||||||||||||| ||||||| ||||||||||||||||||| ||||||
seq2  GCTAGGGATTTCAGC-ATGACCATTCTGCATCTTGGAGAGGCAAAGAATT  1088

seq1  CAGTAGCTGCTTCGTCCATG-AGACTGGATTTTTAAAAAACTCTCCTTTC  1147
      |||||||||| |||| |||| |||||||| |||    ||||||||  || 
seq2  CAGTAGCTGC-TCGT-CATGAAGACTGGAATTT----AAACTCTC--TTT  1130

seq1  CCTCAAAAGTCCCTCAAAGTCCAAGGAACCTCACCAGGTGCTTGTTCACT  1197
      ||||  |||| |||| |||||| ||||  |||| ||||    ||||  ||
seq2  CCTC--AAGT-CCTC-AAGTCC-AGGA--CTCA-CAGG---CTGTTACCT  1169

seq1  TCAGGGAACTCATCTTTC  1215
      |||||||| | |||||||
seq2  TCAGGGAA-TGATCTTTC  1186