BAC Information

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BAC

Clone NameB6Ng01-138K09
Chromosome13 (Build37)
Map Location 44,783,049 - 44,784,081
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100039403, Cd83, LOC100039432, A730030A06, EG637868, EG667157
Downstream geneJarid2, Dtnbp1, Hsp25-ps1, LOC100039502, LOC667204, LOC100039533, Mylip, Gmpr, Atxn1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-138K09.bB6Ng01-138K09.g
ACCDH937849DH937850
length1,020908
definitionDH937849|Mus musculus domesticus DNA, BAC clone: B6Ng01-138K09, 5' end.DH937850|Mus musculus domesticus DNA, BAC clone: B6Ng01-138K09, 3' end.
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
gaattcattcactgatcattccattaccatgtattgaatgaacatctgca
gagtgaggagggctcttgtgggtaaaacataagaatggggtcaccaagat
ctctgtccatattccatggtcatttccgttagggtccaggcctggcctta
aaacatttttagggggctgggtatataaactcattgatacagtgcttgct
agcatttattaatccctaggtccagtcgccagtactgaaagtaagctgtt
tcctgaaacaagttttgaatcattgttttaaatgacaataaagtgctgac
ttaatgcactatgcactaacctacactgtgagtgctaagccgggcaggga
ggttcccaagctgcacgtggtgggtatgtatacacacctttagtcccagt
cccagagacaggctgacctctgtgagttcaaggtcagcctggtctccata
gtgaattccaggacagccagagctatggagtgagaccttgtctcacaaac
aacaaaacccacaaacataaaaccaaactattttccccaagagaggacca
caaaccaacacaaactgtatgctacaggcaagctggagctctctgactgt
ctcctcgcacagtgcatggggctcctttgtcccatgagcctctctctgca
gccttgtgtttctctgattgtttcctctctctgctgtccggcagcacaga
ttacaaattctccatgcctttgtaagaatgttcacgtttcccctttcccc
taatctgatctccatctttacacttaatggagtttatattcaaagattgc
tctgcgccttttgactaaaatcaattggaatatatactctaagaactcta
gtagggacaccactgttcaaagtagcgttattgacgagtcaaatgtgaga
caacctacgatagatacatgagcaggactgagactgactgggactggcgt
gcttgcttagccatgggtaagcccagatactgttccttgcattgaaacag
gtaatatgggaaatgagcag
gaattctttgctgtagaaagatccatcctaaatctggatattctgtgttg
ggaagacccacaccaaatctgggccacactttcttgtggcagcccacata
aaaggacatgaaagaagaatgctttagctttttgcccatttgccctcagt
ctcactggcaaatgtatctatgctgttactgaggcgttcttttgctggta
ttagaaccgacttctccagaattaacttcctgaggctgtagcaccagctt
gggcctgctgagagatccagtcttgtagactgaacaaccacaggatcctt
ggcctttgcactggaagatgtcatttgttggactattcagacaggctact
gttgaggtttggtcttttgcagcgaattgtaaggctaaaggcaggctcct
aagacctggttgccccagagacgagagtgtccgcacatagacccaagtga
caatgtgcaatcttgaccccaagttattgttggttgctgaagatgctgaa
agctgagcagaagagacataggcagggtgtagggttcctgggcttggggg
ctggagaaccacgaagaggaagaagaaggtgacagaggagagagaagcca
ccgtagggtaggtaagtcataaaaacgtacccctaagggctggccagttg
gagttaagagcagtccagatgaaacatagtaaaacttggagttattgata
ggaaagtagattctaatagcatagagagtagataaccagctctagtagcc
caactctagtgctgatcgtcttatataaatatgaaggttgtgtgtgtctt
tcatccggaaataaatggtcaaaggggtggaagctctggattgggactaa
aatttctaccacaagccacttctaataattgtgtgtgtgtgtgtgtgtgt
ggttccgt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr13_44783049_44784081
seq2: B6Ng01-138K09.b_44_1063 (reverse)

seq1  CTGCTCATCTCCCATATTCCCTGTTTTCAATGCAAGGAACAGAAATCCTG  50
      |||||||| ||||||||| |||| |||||||||||||||||| |   |||
seq2  CTGCTCATTTCCCATATTACCTG-TTTCAATGCAAGGAACAGTA--TCTG  47

seq1  GGCCTTAACCATGGCTAAGCAAGCACGCCAGTGCCCAGTTAAGTCTTCAG  100
      || |||| |||||||||||||||||||||||| ||||| | |||| ||||
seq2  GG-CTTACCCATGGCTAAGCAAGCACGCCAGT-CCCAG-TCAGTC-TCAG  93

seq1  TCCCTGCTCATGTATCTATCTGTAGGTTGTTCTCACCTTTTGACTACGTC  150
      | |||||||||||||||||| |||||||| ||||| | ||||||| ||||
seq2  T-CCTGCTCATGTATCTATC-GTAGGTTG-TCTCA-CATTTGACT-CGTC  138

seq1  AATAACGCTACTTTGAACAGAGGTGTCCCTACTTTGAGTTCTTAGAGTAT  200
      |||||||||||||||||||| ||||||||||| | |||||||||||||||
seq2  AATAACGCTACTTTGAACAGTGGTGTCCCTAC-TAGAGTTCTTAGAGTAT  187

seq1  ATATTCCAATTGATCTTAGTCAAAAGGCGCAGAGCAATCTTTGAATATAA  250
      |||||||||||||| |||||||||||||||||||||||||||||||||||
seq2  ATATTCCAATTGATTTTAGTCAAAAGGCGCAGAGCAATCTTTGAATATAA  237

seq1  ACTCCATTAAGTGTAAAGAAGGAGATCAGATTAGGGGAAAGGGGAAACGT  300
      ||||||||||||||||||| ||||||||||||||||||||||||||||||
seq2  ACTCCATTAAGTGTAAAGATGGAGATCAGATTAGGGGAAAGGGGAAACGT  287

seq1  GAACATTCTTACAAAGGCATGGAGAATTTGGAATCTGTGCTGCCGGACAG  350
      |||||||||||||||||||||||||||||| |||||||||||||||||||
seq2  GAACATTCTTACAAAGGCATGGAGAATTTGTAATCTGTGCTGCCGGACAG  337

seq1  CAGAGAGAGGAAACAAACAGAGAAACACAAGGCTGCAGAGAGAGGCTCAT  400
      |||||||||||||||| |||||||||||||||||||||||||||||||||
seq2  CAGAGAGAGGAAACAATCAGAGAAACACAAGGCTGCAGAGAGAGGCTCAT  387

seq1  GGGACAAAGGAGCCCCATGCACTGTGCGAGGAGACAGTCAGAGAGCTCCA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGACAAAGGAGCCCCATGCACTGTGCGAGGAGACAGTCAGAGAGCTCCA  437

seq1  GCTTGCCTGTAGCATACAGTTTGTGTTGGTTTGTGGTCCTCTCTTGGGGA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTGCCTGTAGCATACAGTTTGTGTTGGTTTGTGGTCCTCTCTTGGGGA  487

seq1  AAATAGTTTGGTTTTATGTTTGTGGGTTTTGTTGTTTGTGAGACAAGGTC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATAGTTTGGTTTTATGTTTGTGGGTTTTGTTGTTTGTGAGACAAGGTC  537

seq1  TCACTCCATAGCTCTGGCTGTCCTGGAATTCACTATGGAGACCAGGCTGA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACTCCATAGCTCTGGCTGTCCTGGAATTCACTATGGAGACCAGGCTGA  587

seq1  CCTTGAACTCACAGAGGTCAGCCTGTCTCTGGGACTGGGACTAAAGGTGT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTGAACTCACAGAGGTCAGCCTGTCTCTGGGACTGGGACTAAAGGTGT  637

seq1  GTATACATACCCACCACGTGCAGCTTGGGAACCTCCCTGCCCGGCTTAGC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTATACATACCCACCACGTGCAGCTTGGGAACCTCCCTGCCCGGCTTAGC  687

seq1  ACTCACAGTGTAGGTTAGTGCATACTGCATTAAGTCAGCACTTTATTGTC  750
      |||||||||||||||||||||||| |||||||||||||||||||||||||
seq2  ACTCACAGTGTAGGTTAGTGCATAGTGCATTAAGTCAGCACTTTATTGTC  737

seq1  ATTTAAAACAATGATTCAAAACTTGTTTCAGGAAACAGCTTACTTTCAGT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTAAAACAATGATTCAAAACTTGTTTCAGGAAACAGCTTACTTTCAGT  787

seq1  ACTGGCGACTGGACCTAGGGATTAATAAATGCTAGCAAGCACTGTATCAA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGGCGACTGGACCTAGGGATTAATAAATGCTAGCAAGCACTGTATCAA  837

seq1  TGAGTTTATATACCCAGCCCCCTAAAAATGTTTTAAGGCCAGGCCTGGAC  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGTTTATATACCCAGCCCCCTAAAAATGTTTTAAGGCCAGGCCTGGAC  887

seq1  CCTAACGGAAATGACCATGGAATATGGACAGAGATCTTGGTGACCCCATT  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTAACGGAAATGACCATGGAATATGGACAGAGATCTTGGTGACCCCATT  937

seq1  CTTATGTTTTACCCACAAGAGCCCTCCTCACTCTGCAGATGTTCATTCAA  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTATGTTTTACCCACAAGAGCCCTCCTCACTCTGCAGATGTTCATTCAA  987

seq1  TACATGGTAATGGAATGATCAGTGAATGAATTC  1033
      |||||||||||||||||||||||||||||||||
seq2  TACATGGTAATGGAATGATCAGTGAATGAATTC  1020