BAC Information

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BAC

Clone NameB6Ng01-138P17
Chromosome13 (Build37)
Map Location 112,034,618 - 112,035,819
singlet/doubletsinglet
Overlap genenone
Upstream geneRab3c, EG432803, 9830130M13Rik, Plk2, LOC100040614, LOC668159
Downstream gene4732495G21Rik, LOC100040640, EG621953, Gpbp1, LOC100040666, Mier3, Map3k1, LOC668181, LOC100040716, LOC100041161, LOC100041175
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-138P17.bB6Ng01-138P17.g
ACCDH938085DH938086
length1,2361,176
definitionDH938085|Mus musculus domesticus DNA, BAC clone: B6Ng01-138P17, 5' end.DH938086|Mus musculus domesticus DNA, BAC clone: B6Ng01-138P17, 3' end.
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattcaaggctcatacctaaacataacaaaatcaatctacagcaaacca
gtagccaacatcaaagtaaatggagagaagctagaagcaagcccacgaaa
atcagagaccagacaaggctgtccactttctccccacctattcaatatag
tacttgaagtccttgccagagcaattccacaacaaaaggagatcaacagg
atacaaattggaaaggaagaagtcaaaatatcactatttgcagatgatat
gatagtatatataagtgaccctaaaaattccaccagagaactcctaagcc
tgataaacagcttcagtgcagtagctggatataaaattaactcaaacaaa
tcaatggcctttctctacactaaggataaacaggctgtgaaataaattag
ggaaacaataacctttcaatagtcaaaaataatataaaataccttggtgt
gactctaactaaggaagttagaatgactctaactaagccagtcagaatgg
ctaagatcaaaaattcaggtgacaacagatgctggcgaggatgtggagaa
agaggaacactcctcctttgatggtgggattgcaaacttgtacaaccact
ctggaaatctgtctggtggttcctcagaaaattggacatagtactaccag
aagatccagcaatacctctcctgggcatatacccagaagatgttccaact
gctaataaggacacatgctccactatgttcatagcagccttatttataat
agccagaagctggaaagaacccagatggccctcaacagaagaatgaatac
agaaaatgtggtacatttacatgatgcagtaccactcagctattaaaaac
aatgaattatgaaattcttgggcaaatggatgtatctggaggatatcatc
ctgagtgaagtaacccaatcacaaagtagtctcttgatatgcactcatgg
atagtggatatagtccagaaacttaaatacctaagatacaatttgaaaac
tcaagaaatcagagaggaggaccatgtgtggatactcattcttctagcat
agcgacaaaacacccatggaggagttacagagacaaatttgagctgaacg
cagaatgacatctagagacttgctgcactgggatctatcatatcagcagc
atgcggaacctgttgtctaacagttagattgcctaaggacctgaatagcc
ttgtccttgtgaggccactggtctcagtcctcctga
gaattcaaaccctcaagtgaagtaaggacacatttgctgcagggcctttc
atcagtttccatccctgtctcatcattccactttgtattgctactcagag
actcttgcctcacgcacagggtctgctcagtccccatcagttcctcccaa
gggtgtgtgctctccgaatttgacctggcactgtgaggagactcgattag
cacactgatcaggtcccttagtgaataatgggaaaaaattaagagtgcta
acgtttaatgaactcctgttcttaccatccactttgacagacactttata
ggcatctcatgtcaacccaagacaactttatgagcagaaatggttattat
cttccttttatggcatcagaagctgagactttgaaaagttctggatgact
caatttgcaagtataacaagtaggagacagacctaatttttccaaattca
aaagttgtatccctaaccactgtgattactatcaaaccaaaccaaagtga
agaagcttcgatttatgtgagggaaaattaggggcccaagatattttaag
atgtatgacttaaaagtccaatgacaatggtcttcagagtttaagactga
aaaaggaaatgcttgtcaaagtgcagtggaatgtagctgcgaagagatga
gagtctcatttaaggccaaacaaacaggaggcaaaacagcaaagcttata
agaagtgtctccaaaactatctaataaaatttggcattatatctaagtaa
attaaattccaaagtgatactcaattcagaaattgactgactttgacatg
atggagatgagttacataaacaacatgtaagagaagccaatggatttggt
cttcagtgtgttaaattagaggggacattggaatgttaacacagcccaaa
caatcaactatttgtttcaaaataaatattggaggtacagtcacaatcat
atctgaaccactgagttttagatgtgtatagcatgtcagaaatatatgtg
gaggataatagaaagatctagtgatggaaacaccatgtgcaataattaat
acgatgaagagaagtataataaagaatatgagctgtgctccgaagacttt
cagatgtagttccttctagtgaactagagaggcttatggggaacaggaca
ctgaggtggtcatggatgcatccaac
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr13_112034618_112035819
seq2: B6Ng01-138P17.g_68_1243

seq1  GAATTCAAACCCTCAAGTGAAGTAAGGACACATTTGCTGCAGGGCCTTTC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAAACCCTCAAGTGAAGTAAGGACACATTTGCTGCAGGGCCTTTC  50

seq1  ATCAGTTTCCATCCCTGTCTCATCATTCCACTTTGTATTGCTACTCAGAG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCAGTTTCCATCCCTGTCTCATCATTCCACTTTGTATTGCTACTCAGAG  100

seq1  ACTCTTGCCTCACGCACAGGGTCTGCTCAGTCCCCATCAGTTCCTCCCAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCTTGCCTCACGCACAGGGTCTGCTCAGTCCCCATCAGTTCCTCCCAA  150

seq1  GGGTGTGTGCTCTCCGAATTTGACCTGGCACTGTGAGGAGACTCGATTAG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGTGTGTGCTCTCCGAATTTGACCTGGCACTGTGAGGAGACTCGATTAG  200

seq1  CACACTGATCAGGTCCCTTAGTGAATAATGGGAAAAAATTAAGAGTGCTA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACACTGATCAGGTCCCTTAGTGAATAATGGGAAAAAATTAAGAGTGCTA  250

seq1  ACGTTTAATGAACTCCTGTTCTTACCATCCACTTTGACAGACACTTTATA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACGTTTAATGAACTCCTGTTCTTACCATCCACTTTGACAGACACTTTATA  300

seq1  GGCATCTCATGTCAACCCAAGACAACTTTATGAGCAGAAATGGTTATTAT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCATCTCATGTCAACCCAAGACAACTTTATGAGCAGAAATGGTTATTAT  350

seq1  CTTCCTTTTATGGCATCAGAAGCTGAGACTTTGAAAAGTTCTGGATGACT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCCTTTTATGGCATCAGAAGCTGAGACTTTGAAAAGTTCTGGATGACT  400

seq1  CAATTTGCAAGTATAACAAGTAGGAGACAGACCTAATTTTTCCAAATTCA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATTTGCAAGTATAACAAGTAGGAGACAGACCTAATTTTTCCAAATTCA  450

seq1  AAAGTTGTATCCCTAACCACTGTGATTACTATCAAACCAAACCAAAGTGA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGTTGTATCCCTAACCACTGTGATTACTATCAAACCAAACCAAAGTGA  500

seq1  AGAAGCTTCGATTTATGTGAGGGAAAATTAGGGGCCCAAGATATTTTAAG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAGCTTCGATTTATGTGAGGGAAAATTAGGGGCCCAAGATATTTTAAG  550

seq1  ATGTATGACTTAAAAGTCCAATGACAATGGTCTTCAGAGTTTAAGACTGA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTATGACTTAAAAGTCCAATGACAATGGTCTTCAGAGTTTAAGACTGA  600

seq1  AAAAGGAAATGCTTGTCAAAGTGCAGTGGAATGTAGCTGCGAAGAGATGA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAGGAAATGCTTGTCAAAGTGCAGTGGAATGTAGCTGCGAAGAGATGA  650

seq1  GAGTCTCATTTAAGGCCAAACAAACAGGAGGCAAAACAGCAAAGCTTATA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTCTCATTTAAGGCCAAACAAACAGGAGGCAAAACAGCAAAGCTTATA  700

seq1  AGAAGTGTCTCCAAAACTATCTAATAAAATTTGGCATTATATCTAAGTAA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAGTGTCTCCAAAACTATCTAATAAAATTTGGCATTATATCTAAGTAA  750

seq1  ATTAAATTCCAAAGTGATACTCAATTCAGAAATTGACTGACTTTGACATG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTAAATTCCAAAGTGATACTCAATTCAGAAATTGACTGACTTTGACATG  800

seq1  ATGGAGATGAGTTACATAAACAACATGTAAGAGAAGCCAATGGATTTGGT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGAGATGAGTTACATAAACAACATGTAAGAGAAGCCAATGGATTTGGT  850

seq1  CTTCAGTGTGTTAAATTAGAGGGGACATTGGAATGTTAACACAGCCCAAA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCAGTGTGTTAAATTAGAGGGGACATTGGAATGTTAACACAGCCCAAA  900

seq1  CAATCAACTATTTGTTTCAAAATAAATATTGGAGGTACAAGTCAACAATC  950
      |||||||||||||||||||||||||||||||||||||| |||| ||||||
seq2  CAATCAACTATTTGTTTCAAAATAAATATTGGAGGTAC-AGTC-ACAATC  948

seq1  AATATCTGAACCACTGGAGTTTTAAGATGTTGTTATAGGCAATGTCAGAA  1000
       |||||||||||||| ||||||| ||||||   |||||   |||||||||
seq2  -ATATCTGAACCACT-GAGTTTT-AGATGT--GTATAG--CATGTCAGAA  991

seq1  ATAATATGT-GAGGATAATAGAAAGATTCTAGTGATGGAAACAACCATGT  1049
      || |||||| |||||||||||||||| ||||||||||||||| |||||||
seq2  AT-ATATGTGGAGGATAATAGAAAGA-TCTAGTGATGGAAAC-ACCATGT  1038

seq1  GC-ATAAATAATACAGAATGGAGGAAG-GAAGTATAATAAAG-ATATGAG  1096
      || |||| ||||||      || |||| |||||||||||||| |||||||
seq2  GCAATAATTAATAC------GATGAAGAGAAGTATAATAAAGAATATGAG  1082

seq1  CTGGGTGCTCCG-AGACTTTCAAGATGTAG-TCCTCCTAGTGAAACTAGA  1144
      ||  |||||||| |||||||| |||||||| |||| |||||| |||||||
seq2  CT--GTGCTCCGAAGACTTTC-AGATGTAGTTCCTTCTAGTG-AACTAGA  1128

seq1  GAGGGCTTTATGGGGGAGCAGGGAGCAGCTGAGGTGGGTTTTCAATGATG  1194
      ||||   |||| ||||| ||||   || |||||||||    |||  ||||
seq2  GAGG--CTTAT-GGGGAACAGG--ACA-CTGAGGTGG----TCATGGATG  1168

seq1  CATCCAAC  1202
      ||||||||
seq2  CATCCAAC  1176