BAC Information

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BAC

Clone NameB6Ng01-139E01
Chromosome2 (Build37)13 (Build37)
Map Location 79,180,516 - 79,180,6879,385,257 - 9,386,358
singlet/doubletsingletsinglet
Overlap geneCerkl
Upstream geneLOC383717, LOC100040476, LOC100040494, 4930401B11Rik, Ube2e3, LOC100040526, Itga4
Downstream geneNeurod1, Ssfa2, Ppp1r1c, Pde1a, LOC668005, Prdx6-rs1, Dnajc10
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-139E01.bB6Ng01-139E01.g
ACCDH938286DH938287
length1,0491,098
definitionDH938286|Mus musculus domesticus DNA, BAC clone: B6Ng01-139E01, 5' end.DH938287|Mus musculus domesticus DNA, BAC clone: B6Ng01-139E01, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(79,180,516 - 79,180,687)(9,385,257 - 9,386,358)
sequence
gaattctcacctgcggaatattgaatggcagagaagcacctgaaaaaatg
ttcagcatccttaatcatcagggaaatgcaaatcaaaacaaccctgagat
tcaacctcataccagtcagaatgactaagatcaaaaattcaggtgacagc
agatgctggtgaggagggggagaaagaggaacactcctccattgttggtg
acattgcaagcttgtagaaccactgtggaaatcagtctggcagttcctca
gaaaattggacatagtacttccagaggatcctgcaatacctctcctgggc
atatatccagaagatgttccaactggtaagaaggacacatgctccactat
gttcatagcagccttatttacaatagccagaagttggaaagaacccagat
gcccctcaacagaggaatggatacagaaaatgtggtacatttacataatg
tagtactattcggctattaaaaacaatgaatttatgaaattcctaggcaa
atggatggacctggagggcatcatcctgagtgaggtaacccaatcacaaa
agaactcacatgatatgtactcactgataagtggatattagcccagaaac
ttagaatacccaagatacaagttgcaaaacacatgaaactcaagaataat
taagaccaaagcgtagtcactttaccccttctttgaattggtaataaaat
acccatggaaggagttacagagacaaagtttggagctgagacgaaaggat
ggaccatctagtgattgccatatgcagggatccatcccataatcagcttc
caaacgctgacaccattgcatacactagcaaggttttgctgaaaggaccc
agatatagctgtctcttgtgaggccatgctgggatctagcaaacacagaa
gtggatgctcacagtcaggtattggatggatcacatggcacccaatggag
gagctagagaagtacccaaagagctgaagggtctgcaaccctatagtgga
acacatatgactaacagtaccccagagctcgtgtctttagctgctatgt
gaattcttcatttgctggtctaccttcaagctctgcagccctgcttctac
ctcttccactgaaagtacagctcctgaatgtgagctcttcttaagttttt
ctttatttgcagaaagactagaaagaagaggttttaaatctactttgcct
ttctgtagcatttctaaaatgtccactctattttcagcacggtctaccga
tggtataggaaaataattccccgagttctggccaggagagaggacggctt
gctccaaacctgccagtctctcaagtttttcatgggatgtagatccaagg
ctgctggaaacgctccctgagcggcttgggttagagaaccacctactgaa
gtggctggcagagactgacccttcccccagaacatcttctattatcgaag
ccaaacatggtgccttatcagggttaaagaattcattaaagtcaaattct
cctggggactgctcaggtaggatggcattctttggaacttcctgatcagc
agagggaccctgggccagaatgtcttccaccctgtcctcttccacccctc
cattgctctgtcaccttgttctttttctccctttgtgatcctcttctaga
gtcttattatcagctctatgtttcggactgactggtaggtcccgctgaaa
accattctggttcttcctcagtgtatgaatcgtttcttctatgctcacca
aagacacgtttactatctccaaactccctcctgaaatgcttgtccttgta
gtccctctctctgtctccatctctcaagttgtgcaggtccttgtcactga
gacagtgatcctattcaaatgcccaggcagaaattatcttttcactgcca
atcctttcgtctaccaagtaggcgaagcccatcactgtttttctccatga
actgccagagtgtagggagctaagagcagctgtcaccagcagccacctcc
aaagctttgtctctggattgagaacgacatctaagtctcttctttcatct
cctcttgtgggtttgcttttttgtgcactagaaaaatagacctgattctg
tctctttctccgactttccactggtgagctttgttcaaggctgggtag
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr2_79180516_79180687
seq2: B6Ng01-139E01.b_931_1094 (reverse)

seq1  ACATATGCAGCTAGAGTCAAGAGCTCCGGGGTACTGATTAGTTCATATTG  50
      ||||| ||||||| || || |||||| ||||||||| |||| ||||||  
seq2  ACATA-GCAGCTAAAGACACGAGCTCTGGGGTACTG-TTAG-TCATAT--  45

seq1  TTGTTCCACATATAGGGTTGCAGATCCCTTTAGCTCCTTGGGTACTTTCT  100
       |||||||| |||||||||||||| ||||| ||||| |||||||| ||||
seq2  GTGTTCCAC-TATAGGGTTGCAGA-CCCTTCAGCTCTTTGGGTAC-TTCT  92

seq1  CTAGCTCCCCCATTGGGGGCCGTGTGACCCATCCAATAGCTGACTGTGAG  150
      |||||||| |||||||| ||| ||||| |||||||||| |||||||||||
seq2  CTAGCTCCTCCATTGGGTGCCATGTGATCCATCCAATACCTGACTGTGAG  142

seq1  CATCCACTTCTGTGTTTGCTAG  172
      ||||||||||||||||||||||
seq2  CATCCACTTCTGTGTTTGCTAG  164

seq1: chr13_9385257_9386358
seq2: B6Ng01-139E01.g_67_1164

seq1  GAATTCTTCATTTGCTGGTCTACCTTCAAGCTCTGCAGCCCTGCTTCTAC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTCATTTGCTGGTCTACCTTCAAGCTCTGCAGCCCTGCTTCTAC  50

seq1  CTCTTCCACTGAAAGTACAGCTCCTGAATGTGAGCTCTTCTTAAGTTTTT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTTCCACTGAAAGTACAGCTCCTGAATGTGAGCTCTTCTTAAGTTTTT  100

seq1  CTTTATTTGCAGAAAGACTAGAAAGAAGAGGTTTTAAATCTACTTTGCCT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTATTTGCAGAAAGACTAGAAAGAAGAGGTTTTAAATCTACTTTGCCT  150

seq1  TTCTGTAGCATTTCTAAAATGTCCACTCTATTTTCAGCACGGTCTACCGA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTGTAGCATTTCTAAAATGTCCACTCTATTTTCAGCACGGTCTACCGA  200

seq1  TGGTATAGGAAAATAATTCCCCGAGTTCTGGCCAGGAGAGAGGACGGCTT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTATAGGAAAATAATTCCCCGAGTTCTGGCCAGGAGAGAGGACGGCTT  250

seq1  GCTCCAAACCTGCCAGTCTCTCAAGTTTTTCATGGGATGTAGATCCAAGG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTCCAAACCTGCCAGTCTCTCAAGTTTTTCATGGGATGTAGATCCAAGG  300

seq1  CTGCTGGAAACGCTCCCTGAGCGGCTTGGGTTAGAGAACCACCTACTGAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCTGGAAACGCTCCCTGAGCGGCTTGGGTTAGAGAACCACCTACTGAA  350

seq1  GTGGCTGGCAGAGACTGACCCTTCCCCCAGAACATCTTCTATTATCGAAG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGCTGGCAGAGACTGACCCTTCCCCCAGAACATCTTCTATTATCGAAG  400

seq1  CCAAACATGGTGCCTTATCAGGGTTAAAGAATTCATTAAAGTCAAATTCT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAAACATGGTGCCTTATCAGGGTTAAAGAATTCATTAAAGTCAAATTCT  450

seq1  CCTGGGGACTGCTCAGGTAGGATGGCATTCTTTGGAACTTCCTGATCAGC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGGGGACTGCTCAGGTAGGATGGCATTCTTTGGAACTTCCTGATCAGC  500

seq1  AGAGGGACCCTGGGCCAGAATGTCTTCCACCCTGTCCTCTTCCACCCCTC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGGGACCCTGGGCCAGAATGTCTTCCACCCTGTCCTCTTCCACCCCTC  550

seq1  CATTGCTCTGTCACCTTGTTCTTTTTCTCCCTTTGTGATCCTCTTCTAGA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTGCTCTGTCACCTTGTTCTTTTTCTCCCTTTGTGATCCTCTTCTAGA  600

seq1  GTCTTATTATCAGCTCTATGTTTCGGACTGACTGGTAGGTCCCGCTGAAA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTTATTATCAGCTCTATGTTTCGGACTGACTGGTAGGTCCCGCTGAAA  650

seq1  ACCATTCTGGTTCTTCCTCAGTGTATGAATCGTTTCTTCTATGCTCACCA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCATTCTGGTTCTTCCTCAGTGTATGAATCGTTTCTTCTATGCTCACCA  700

seq1  AAGACACGTTTACTATCTCCAAACTCCCTCCTGAAATGCTTGTCCTTGTA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGACACGTTTACTATCTCCAAACTCCCTCCTGAAATGCTTGTCCTTGTA  750

seq1  GTCCCTCTCTCTGTCTCCATCTCTCAAGTTGTGCAGGTCCTTGTCACTGA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCCCTCTCTCTGTCTCCATCTCTCAAGTTGTGCAGGTCCTTGTCACTGA  800

seq1  GACAGTGATCCTATTCAAATGCCCAGGCAGAAATTATCTTTTCACTGCCA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACAGTGATCCTATTCAAATGCCCAGGCAGAAATTATCTTTTCACTGCCA  850

seq1  ATCC-TTCGTCTACCAAGTAGGCGAAGCCCATCACTGTCTTTCTCCAATG  899
      |||| ||||||||||||||||||||||||||||||||| ||||||| |||
seq2  ATCCTTTCGTCTACCAAGTAGGCGAAGCCCATCACTGTTTTTCTCC-ATG  899

seq1  AACTGCCAGAGTGTAGGGAGCTAAGAGCAGCTGTCACCAGCAGCCACCTC  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTGCCAGAGTGTAGGGAGCTAAGAGCAGCTGTCACCAGCAGCCACCTC  949

seq1  CAAAGCTTTGTCTCTGGATTGAGAACGACATCTAAGTCCTCTTCTTTCA-  998
      ||||||||||||||||||||||||||||||||||||| ||||||||||| 
seq2  CAAAGCTTTGTCTCTGGATTGAGAACGACATCTAAGT-CTCTTCTTTCAT  998

seq1  CTCACTCTTGTGGGTTTGCTATTTTGTGCACTAGAAAAAGTAGACCTGAT  1048
      ||| |||||||||||||||| |||||||||||||||||| ||||||||||
seq2  CTC-CTCTTGTGGGTTTGCTTTTTTGTGCACTAGAAAAA-TAGACCTGAT  1046

seq1  TCTGTCTCTTTCTTCAGACTTTCCACTGGTGAGCTCTGTCCCAAGGCTGG  1098
      |||||||||||| || ||||||||||||||||||| |||  |||||||||
seq2  TCTGTCTCTTTC-TCCGACTTTCCACTGGTGAGCTTTGT-TCAAGGCTGG  1094

seq1  GTAG  1102
      ||||
seq2  GTAG  1098