BAC Information

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BAC

Clone NameB6Ng01-139G10
Chromosome13 (Build37)4 (Build37)
Map Location 15,832,121 - 15,832,281147,129,490 - 147,130,244
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneEG665099, LOC670994, EG625121, Gli3
Downstream geneLOC665157, Inhba, LOC625181, LOC665191
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-139G10.bB6Ng01-139G10.g
ACCDH938393DH938394
length9251,012
definitionDH938393|Mus musculus domesticus DNA, BAC clone: B6Ng01-139G10, 5' end.DH938394|Mus musculus domesticus DNA, BAC clone: B6Ng01-139G10, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(15,832,121 - 15,832,281)(147,129,490 - 147,130,244)
sequence
gaattcattcttttttttgttttgtttttggtggttttctttgtttgttg
tttcgagacagggtttctctgtgtagtcctggcttgtcctggaactcact
cagaaggtcaggctggcctcaaactcagaaatccacctgcctctgcctcc
caagtgctgggattaaaggcatatgccaccatgccaggaaattcattctt
tttaattgctgagtagtccatctgatttaggattggtaaagatcttttcc
caatctgttgctggtctttttgacttatggacagtgtcttttgccttaca
gaagctttgcaattttttaaaaaatatttattttattttattttatctta
ttacatgtgagtacactgtagctgtcttcagacactctggaagagggcat
cagatcttgttacggatggttgtgagccaccatgtggttgctgggatttg
aactcaggaccttcagaagagcagtcagtgctcttaaccactgagccatc
tcaccagcccagctttgcaattttatgaggtcccatttgttaattcttga
tcttacagcacaagccattgctgatctgtttaggaattttccccctgtgc
ccatatcttcgaggcttttccctactttctcctcttaatttcagtgtctc
tggtcttttgtggaggtctttgatccacttagacttgagctttgtacaag
gagataagaatggattaatttgtattcttctacatgataaccaccagttg
tgccggcaccatttgttcaaaatgctgtcttttttccactggatggtttt
agctcccttgtcaaagatcaagtgaccgttggtgtgtgggttcatttctg
ggtcttcatttctatttcattgatttccctgtctgtcgctgtaccaggac
catccagtgtttatcacaattgctc
gaattctcagactgcttttttcagtaaagcatttgtcacattcactgcat
ttataaggtttctctcctgtatgaattctctgatgaatactaagatggaa
ttttcgggtaaagcatttgtcacattcactacatttgtaaggtttctctc
ctgtatgaattctctgatgactattaagatgggatttgtgggtaaagcat
ttgtcacattcactacatttgtaaggtttctctcctgtatgaattctctg
atgaacgctaagatgagatttttgggtaaagcatttgtcacattcactgc
atttgtaaggtttctctcctgtatgaattctctgatgactattaagatgg
gatttgtgggtaaaggatttgtcacattcactacatttgtaaggtttctc
tcctgtatgaattctctgatgcatactaaaactgaatttgtgtttaaaac
atttgtcacattcactgcatttgtaagggttctctcctgtatgaattctc
tgatgaatattaagataggatttgtgggtaaagcatttgtcacattcact
acatttgtaaattttctcttctgcatgaattccctgatggatactaagat
ggatctgatgggtaaagcatttgtcacttttactacttctgtaaggtttc
tttccatgataaattctctgctgactttgaagttttttctctctgggtaa
gatatttgtcaaattcactacatttgtaagggttcactccagtattgttc
cgtttcaccatgactttatgtttagaaacaaaaaccttcgcaaattctgc
atttcggttgtgttttttcttctgcatgtggattccctgattgagactaa
tggtagaaaaacaaacttacactgtttacagagtcatggaatttgcaaac
ttctttagtgttctgggcttagtctttttttgttcgaagtaattgaagaa
gagcgtgaataagtttggaggtgtacattgggggaatcaagatcacctgg
ctaagcttgtcc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr13_15832121_15832281
seq2: B6Ng01-139G10.b_55_228 (reverse)

seq1  GGCATGGTGGCACATGCCTTTAATCCCAGCACTTGGGAGGCAGAGGCAGG  50
      |||||||||||| |||||||||||||||||||||||||||||||||||||
seq2  GGCATGGTGGCATATGCCTTTAATCCCAGCACTTGGGAGGCAGAGGCAGG  50

seq1  TGGATTTCTGAGTTTGAGGCCAGCCTGGTCTACAGAGTGAGTTCCAGGAC  100
      |||||||||||||||||||||||||||  || | ||||||||||||||||
seq2  TGGATTTCTGAGTTTGAGGCCAGCCTGACCTTCTGAGTGAGTTCCAGGAC  100

seq1  -ATCCAGGACTACACAGAGAAACCCTGTCT-----CAAAAAACAA--AAT  142
       | |||||||||||||||||||||||||||     ||| ||||||  || 
seq2  AAGCCAGGACTACACAGAGAAACCCTGTCTCGAAACAACAAACAAAGAAA  150

seq1  AC-----AAAACAAAACAAAAAAA  161
      ||     |||||||||||||||||
seq2  ACCACCAAAAACAAAACAAAAAAA  174

seq1: chr4_147129490_147130244
seq2: B6Ng01-139G10.g_325_1078

seq1  TAAGATGGGATTTGTGGGTAAAGCATTTGTCACATTCACTACATTTGTAA  50
      ||||||| ||||| |||||||||||||||||||||||||| |||||||||
seq2  TAAGATGAGATTTTTGGGTAAAGCATTTGTCACATTCACTGCATTTGTAA  50

seq1  GGTTTCTCTCCTGTATGAATTCTCTGATGAACGCTAAGATGAGATTTTTG  100
      ||||||||||||||||||||||||||||||    ||||||| ||||| ||
seq2  GGTTTCTCTCCTGTATGAATTCTCTGATGACTATTAAGATGGGATTTGTG  100

seq1  GGTAAAGCATTTGTCACATTCACTACATTTGTAAGGTTTCTCTCCTGTAT  150
      ||||||| ||||||||||||||||||||||||||||||||||||||||||
seq2  GGTAAAGGATTTGTCACATTCACTACATTTGTAAGGTTTCTCTCCTGTAT  150

seq1  GAATTCTCTGATGCATACTAAAACTGAATTTGTGTTTAAAACATTTGTCA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTCTGATGCATACTAAAACTGAATTTGTGTTTAAAACATTTGTCA  200

seq1  CATTCACTGCATTTGTAAGGGTTCTCTCCTGTATGAATTCTCTGATGAAT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTCACTGCATTTGTAAGGGTTCTCTCCTGTATGAATTCTCTGATGAAT  250

seq1  ATTAAGATGGGATTTGTGGGTAAAGCATTTGTCACATTCACTACATTTGT  300
      |||||||| |||||||||||||||||||||||||||||||||||||||||
seq2  ATTAAGATAGGATTTGTGGGTAAAGCATTTGTCACATTCACTACATTTGT  300

seq1  AAATTTTCTCTTCTGCATGAATTCCCTGATGGATACTAAGATGGATCTGA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATTTTCTCTTCTGCATGAATTCCCTGATGGATACTAAGATGGATCTGA  350

seq1  TGGGTAAAGCATTTGTCACTTTTACTACTTCTGTAAGGTTTCTTTCCATG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGTAAAGCATTTGTCACTTTTACTACTTCTGTAAGGTTTCTTTCCATG  400

seq1  ATAAATTCTCTGCTGACTTTGAAG-TTTTTCTCTCTGGGTAAGATATTTG  449
      |||||||||||||||||||||||| |||||||||||||||||||||||||
seq2  ATAAATTCTCTGCTGACTTTGAAGTTTTTTCTCTCTGGGTAAGATATTTG  450

seq1  TCAAATTCACTACATTTGTAAGGGTTCACTCCAGTATTGTTTCGTTTCAC  499
      ||||||||||||||||||||||||||||||||||||||||| ||||||||
seq2  TCAAATTCACTACATTTGTAAGGGTTCACTCCAGTATTGTTCCGTTTCAC  500

seq1  CATGACTTTATGTTTAGAAACAAAAACCTTCTCAAATTCTGCATTTCGGT  549
      ||||||||||||||||||||||||||||||| ||||||||||||||||||
seq2  CATGACTTTATGTTTAGAAACAAAAACCTTCGCAAATTCTGCATTTCGGT  550

seq1  TGTGTTTTTTCTTCTGCAGGTGGATTCCTTGATTGAGACTAATGGTAG-A  598
      |||||||||||||||||| ||||||||| ||||||||||||||||||| |
seq2  TGTGTTTTTTCTTCTGCATGTGGATTCCCTGATTGAGACTAATGGTAGAA  600

seq1  AAACAAACTTACACTGTTTACAGAGTCATTGTATTTGCAAACTTCTTTAG  648
      ||||||||||||||||||||||||||||| | ||||||||||||||||||
seq2  AAACAAACTTACACTGTTTACAGAGTCATGGAATTTGCAAACTTCTTTAG  650

seq1  TGTTCCTGGGCTTAAGTCTTTTTTGGTTCG-AGT-ATTGAAG-AGAGCTG  695
      |||| |||||||| |||||||||| ||||| ||| ||||||| ||||| |
seq2  TGTT-CTGGGCTT-AGTCTTTTTTTGTTCGAAGTAATTGAAGAAGAGC-G  697

seq1  TGATTAGTTTTGTAAGGTGTACATTGGGGGGATTCAAGAATCACCTTGAT  745
      ||| ||  ||||  ||||||||||| |||||| ||||| ||||||| | |
seq2  TGAATAAGTTTG-GAGGTGTACATT-GGGGGAATCAAG-ATCACCTGGCT  744

seq1  AAGCTTGTCC  755
      ||||||||||
seq2  AAGCTTGTCC  754