BAC Information

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BAC

Clone NameB6Ng01-140F12
Chromosome13 (Build37)
Map Location 101,393,725 - 101,604,281
singlet/doubletdoublet
Overlap geneRad17, Taf9, Ccdc125, Cdk7, Mrps36, Cenph, Ccnb1, Slc30a5
Upstream geneCartpt, Mccc2, Bdp1, Serf1, Smn1, Naip2, Birc1-rs1, Naip5, Birc1c-ps1, Birc1f, EG667838, Naip1, Gtf2h2, Ocln, LOC667861, Marveld2
Downstream geneLOC619865, LOC619917, EG619937, 4933416M06Rik, LOC100039971, LOC100039983, Pik3r1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-140F12.bB6Ng01-140F12.g
ACCDH939099DH939100
length1,094932
definitionDH939099|Mus musculus domesticus DNA, BAC clone: B6Ng01-140F12, 5' end.DH939100|Mus musculus domesticus DNA, BAC clone: B6Ng01-140F12, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(101,393,725 - 101,394,836)(101,603,345 - 101,604,281)
sequence
gaattcactatgtaacccaggctggccttgaactcacatcggtgttcaag
ctccggccactggggctctggactgaaggcatgagccaccgtagctagaa
aagtcctggggtttaggagcttactagcaatgatttcatactttcctttc
tagttgttaaaaagataataagcttagtgaggcagcacaaggctaggagg
atcagaagttgtttaggaacacccaggaacccaggacaagactcttaact
aaaaaccaaacaaacaaaaatccagctttgagacataattcatatatgat
gaagttagtgtacagagtctcactgtgtagttagtccaggtggacttgaa
ctcatgatcctcttacctcgggccaacagtgctgagattagagctcatct
caattatagctataggttataatttatctcagtccccattatattagcca
tttaattctctcaggtaatttcaataataatatacttacaaagactaccc
agccacaaccattaaccaagaagcacactacatattgctataaccccatc
cccccctcagcctccatatcatcgacctcataatccattcaatcacctat
attattagaacaaagtacctcgataatctcataattcattacaatgttac
ctttttctgtattagaaaccactggggcttatgtaagggtcgaaagcttg
atcctccttggcagtgagcgaacccccgggctttgttggaatgcatcaca
cctcttgtagctacggatgtactatattccctgagtaacgagcgtgtcta
gcaaatgagacaggatggaagacatttaggaaatactattgttgttagta
tcaacacataataagaactgctcatatgtattttttatattcattttcca
acatcatcaaagctgctacagattatttaagacaagctcagctgagacat
agggatcaaatgcactgcatgaactctgacagggtctttggtggagtggt
aaagtctttggtaggctgggagaacatttttctgccactaggaaatataa
taatactaaagtttttggcttgtgcttttagacaaggctcctct
gaattcagtatgtagaccaggctggcttcaaactgcctctggctataatt
gggattagaagcatgcgccaccatgctgaccaagatgtccacaattattg
agactcagaccaatagagacccaggtacctgtaaaaaaatagcttttata
tagatatgtctacactaagtaatatcatttcaaagacaggattgaagaaa
atcaatatttttagaaagggaataaaattgtttacaatagcacacctgta
gccccttccttctgtgttccctctcacacacttgagcaggttagcctgta
ctcctgcccaacaattaaatccacaagcagttgcctttctccattgtttt
agcctcccactctgcgttatcgtatcatcagaaatccaaaaataataatc
tctttgtgggagtcacaggcacttcaaaaaacttttagctttctcattag
aaaaaaaaaaaaaaaaaaaacaaaaaaaaaccgttaatgcacttgagtta
gcaacgcctatatgtggctcacgcctgaaattcatcatccaggtttatga
ggctagcctgggctacatgctgagttctaggtctatctgggctacaaagt
gaagccgtttaagaaagaagaaccctgaagcaaagggctaagctctgttt
gttaacacaaatatgcattttctaggggaccatccatccatctctcgagc
gaggagaacacgctgtagccaagatggaccttaaggtggcgctgcaggga
acctcttagggcttctcttgaagacgcgaggagggggcgggtcgagcgga
gccttctcagcggtgggaggagcctgagtgaagcgaagctacgtgtccac
agcggcgcaggcgcaggattggtcactcccccgggagtgaggctgcgggg
cggatgacgtgccggtaacgttctgccgtacg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr13_101393725_101394836
seq2: B6Ng01-140F12.b_47_1140

seq1  GAATTCACTATGTAACCCAGGCTGGCCTTGAACTCACATCGGTGTTCAAG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCACTATGTAACCCAGGCTGGCCTTGAACTCACATCGGTGTTCAAG  50

seq1  CTCCGGCCACTGGGGCTCTGGACTGAAGGCATGAGCCACCGTAGCTAGAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCGGCCACTGGGGCTCTGGACTGAAGGCATGAGCCACCGTAGCTAGAA  100

seq1  AAGTCCTGGGGTTTAGGAGCTTACTAGCAATGATTTCATACTTTCCTTTC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTCCTGGGGTTTAGGAGCTTACTAGCAATGATTTCATACTTTCCTTTC  150

seq1  TAGTTGTTAAAAAGATAATAAGCTTAGTGAGGCAGCACAAGGCTAGGAGG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGTTGTTAAAAAGATAATAAGCTTAGTGAGGCAGCACAAGGCTAGGAGG  200

seq1  ATCAGAAGTTGTTTAGGAACACCCAGGAACCCAGGACAAGACTCTTAACT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCAGAAGTTGTTTAGGAACACCCAGGAACCCAGGACAAGACTCTTAACT  250

seq1  AAAAACCAAACAAACAAAAATCCAGCTTTGAGACATAATTCATATATGAT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAACCAAACAAACAAAAATCCAGCTTTGAGACATAATTCATATATGAT  300

seq1  GAAGTTAGTGTACAGAGTCTCACTGTGTAGTTAGTCCAGGTGGACTTGAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGTTAGTGTACAGAGTCTCACTGTGTAGTTAGTCCAGGTGGACTTGAA  350

seq1  CTCATGATCCTCTTACCTCGGGCCAACAGTGCTGAGATTAGAGCTCATCT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCATGATCCTCTTACCTCGGGCCAACAGTGCTGAGATTAGAGCTCATCT  400

seq1  CAATTATAGCTATAGGTTATAATTTATCTCAGTCCCCATTATATTAGCCA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATTATAGCTATAGGTTATAATTTATCTCAGTCCCCATTATATTAGCCA  450

seq1  TTTAATTCTCTCAGGTAATTTCAATAATAATATACTTACAAAGACTACCC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAATTCTCTCAGGTAATTTCAATAATAATATACTTACAAAGACTACCC  500

seq1  AGCCACAACCATTAACCAAGAAGCACACTACATATTGCTATAACCCCATC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCACAACCATTAACCAAGAAGCACACTACATATTGCTATAACCCCATC  550

seq1  CCCCCCTCAGCCTCCATATCATCGACCTCATAATCCATTCAATCACCTAT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCCCCTCAGCCTCCATATCATCGACCTCATAATCCATTCAATCACCTAT  600

seq1  ATTATTAGAACAAAGTACCTCGATAATCTCATAATTCATTACAATGTTAC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTATTAGAACAAAGTACCTCGATAATCTCATAATTCATTACAATGTTAC  650

seq1  CTTTTTCTGTATTAGAAACCACTGGGGCTTATGTAAGGGTCGAAAGCTTG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTTTCTGTATTAGAAACCACTGGGGCTTATGTAAGGGTCGAAAGCTTG  700

seq1  ATCCTCCTTGGCAGTGAGCGAACCCCCGGGCTTTGTTGGAATGCATCACA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCCTCCTTGGCAGTGAGCGAACCCCCGGGCTTTGTTGGAATGCATCACA  750

seq1  CCTCTTGTAGCTACGGATGTACTATATTCCCTGAGTAACGAGCGTGTCTA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCTTGTAGCTACGGATGTACTATATTCCCTGAGTAACGAGCGTGTCTA  800

seq1  GCAAATGAGACAGGATGGAAGACATTTAGGAAATACTATTGTTGTTAGTA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAAATGAGACAGGATGGAAGACATTTAGGAAATACTATTGTTGTTAGTA  850

seq1  TCAACACATAAATAAGAACTGCTCATATGTATTTTTTATATTCATTTTCC  900
      ||||||||| ||||||||||||||||||||||||||||||||||||||||
seq2  TCAACACAT-AATAAGAACTGCTCATATGTATTTTTTATATTCATTTTCC  899

seq1  AACATCATCAAAGGCTGCTACAAGATTATTTAAGACAAGCTCAGCTGAGA  950
      |||||||||||| |||||||| ||||||||||||||||||||||||||||
seq2  AACATCATCAAA-GCTGCTAC-AGATTATTTAAGACAAGCTCAGCTGAGA  947

seq1  CATAGGGATCAAATGCACTGCATGAACTTCTGAACAGGGTCTTTGGTGGA  1000
      ||||||||||||||||||||||||||| |||| |||||||||||||||||
seq2  CATAGGGATCAAATGCACTGCATGAAC-TCTG-ACAGGGTCTTTGGTGGA  995

seq1  GTTGGTAAAGTCTTTGGTAGGGCTGGGAGAAACATTTTTCTGGCAACTAG  1050
      | ||||||||||||||||| ||||||||| ||||||||||| || |||||
seq2  G-TGGTAAAGTCTTTGGTA-GGCTGGGAG-AACATTTTTCT-GCCACTAG  1041

seq1  GAAATAATAATAAATTACTAAAGTATTTTTGCCTTGTTGCTTTTTAAGAC  1100
      ||||| |||||||  ||||||||  |||||| |||| |||||||  ||||
seq2  GAAAT-ATAATAA--TACTAAAG--TTTTTGGCTTG-TGCTTTT--AGAC  1083

seq1  AAGGTCTCCTCT  1112
      |||| |||||||
seq2  AAGG-CTCCTCT  1094

seq1: chr13_101603345_101604281
seq2: B6Ng01-140F12.g_68_999 (reverse)

seq1  CGTACGGGCAGGAACGTTACCGGGCCACGTCATCCGCCCCGGCAGCCCTC  50
      ||||| |||| ||||||||||||  ||||||||||||||| |||| ||||
seq2  CGTAC-GGCA-GAACGTTACCGG--CACGTCATCCGCCCC-GCAG-CCTC  44

seq1  ACTCCCGGGGGAGTGACCAATCCTGCGCCTGCG-CGCTGGTGGACACGTG  99
      ||||||||||||||||||||||||||||||||| |||| |||||||||| 
seq2  ACTCCCGGGGGAGTGACCAATCCTGCGCCTGCGCCGCT-GTGGACACGTA  93

seq1  GCTTCGCTTCACTCAGGCTCCTCCCACCGCTGGGAAGGCTCCGCTCGACC  149
      |||||||||||||||||||||||||||||||| |||||||||||||||||
seq2  GCTTCGCTTCACTCAGGCTCCTCCCACCGCTGAGAAGGCTCCGCTCGACC  143

seq1  CGCCCCCTCCTCGCGTCTTCAAGAGAAGCCCCTAAGAGG-TCCCTGCAGC  198
      |||||||||||||||||||||||||||| |||||||||| ||||||||||
seq2  CGCCCCCTCCTCGCGTCTTCAAGAGAAG-CCCTAAGAGGTTCCCTGCAGC  192

seq1  GCCACC-TAAGGTCCATCTTGGCTACAGCGTGTTCTCCTCGCTCGAGGGA  247
      |||||| |||||||||||||||||||||||||||||||||||||||| ||
seq2  GCCACCTTAAGGTCCATCTTGGCTACAGCGTGTTCTCCTCGCTCGAGAGA  242

seq1  TGGATGGATGGTCCCCTAGAAAATGCATATTTGTGTTAACAAACAGAGCT  297
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGATGGATGGTCCCCTAGAAAATGCATATTTGTGTTAACAAACAGAGCT  292

seq1  TAGCCCTTTGCTTCAGGGTTCTTCTTTCTTAAACGGCTTCACTTTGTAGC  347
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGCCCTTTGCTTCAGGGTTCTTCTTTCTTAAACGGCTTCACTTTGTAGC  342

seq1  CCAGATAGACCTAGAACTCAGCATGTAGCCCAGGCTAGCCTCATAAACCT  397
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGATAGACCTAGAACTCAGCATGTAGCCCAGGCTAGCCTCATAAACCT  392

seq1  GGATGATGAATTTCAGGCGTGAGCCACATATAGGCGTTGCTAACTCAAGT  447
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGATGATGAATTTCAGGCGTGAGCCACATATAGGCGTTGCTAACTCAAGT  442

seq1  GCATTAACGGTTTTTTTTTGTTTTTTTTTTTTTTTTTTTTCTAATGAGAA  497
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATTAACGGTTTTTTTTTGTTTTTTTTTTTTTTTTTTTTCTAATGAGAA  492

seq1  AGCTAAAAGTTTTTTGAAGTGCCTGTGACTCCCACAAAGAGATTATTATT  547
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTAAAAGTTTTTTGAAGTGCCTGTGACTCCCACAAAGAGATTATTATT  542

seq1  TTTGGATTTCTGATGATACGATAACGCAGAGTGGGAGGCTAAAACAATGG  597
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGGATTTCTGATGATACGATAACGCAGAGTGGGAGGCTAAAACAATGG  592

seq1  AGAAAGGCAACTGCTTGTGGATTTAATTGTTGGGCAGGAGTACAGGCTAA  647
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAAGGCAACTGCTTGTGGATTTAATTGTTGGGCAGGAGTACAGGCTAA  642

seq1  CCTGCTCAAGTGTGTGAGAGGGAACACAGAAGGAAGGGGCTACAGGTGTG  697
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGCTCAAGTGTGTGAGAGGGAACACAGAAGGAAGGGGCTACAGGTGTG  692

seq1  CTATTGTAAACAATTTTATTCCCTTTCTAAAAATATTGATTTTCTTCAAT  747
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATTGTAAACAATTTTATTCCCTTTCTAAAAATATTGATTTTCTTCAAT  742

seq1  CCTGTCTTTGAAATGATATTACTTAGTGTAGACATATCTATATAAAAGCT  797
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGTCTTTGAAATGATATTACTTAGTGTAGACATATCTATATAAAAGCT  792

seq1  ATTTTTTTACAGGTACCTGGGTCTCTATTGGTCTGAGTCTCAATAATTGT  847
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTTTTACAGGTACCTGGGTCTCTATTGGTCTGAGTCTCAATAATTGT  842

seq1  GGACATCTTGGTCAGCATGGTGGCGCATGCTTCTAATCCCAATTATAGCC  897
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGACATCTTGGTCAGCATGGTGGCGCATGCTTCTAATCCCAATTATAGCC  892

seq1  AGAGGCAGTTTGAAGCCAGCCTGGTCTACATACTGAATTC  937
      ||||||||||||||||||||||||||||||||||||||||
seq2  AGAGGCAGTTTGAAGCCAGCCTGGTCTACATACTGAATTC  932