BAC Information

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BAC

Clone NameB6Ng01-140K09
Chromosome13 (Build37)
Map Location 100,129,955 - 100,220,337
singlet/doubletdoublet
Overlap geneMrps27, Mtap1b
Upstream geneLOC100039827, LOC100039665, LOC100039854, LOC218501, Tmem174, Tmem171, LOC669675, Fcho2, Tnpo1, EG432798, LOC100039771, 1700024P04Rik, LOC100039967, LOC100039797, Zfp366, Ptcd2
Downstream geneCartpt, Mccc2, Bdp1, Serf1, Smn1, Naip2, Birc1-rs1, Naip5, Birc1c-ps1, Birc1f, EG667838, Naip1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-140K09.bB6Ng01-140K09.g
ACCDH939320DH939321
length249361
definitionDH939320|Mus musculus domesticus DNA, BAC clone: B6Ng01-140K09, 5' end.DH939321|Mus musculus domesticus DNA, BAC clone: B6Ng01-140K09, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(100,129,955 - 100,130,203)(100,219,971 - 100,220,337)
sequence
acttcttccctgacgcttttactgtaagggcacgagggaccatcttatat
gggtatttgtagttagtagaaaatatcttggttcagaaagagaataacag
gacctgaactatctttaaaagcctccccaacctgcttacttgacagaaca
tcagttgtaagggcaaggtgatgactgtgtgtttgcatggatgctgctgg
ctgcatgtgcacacctgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtg
aaactccctatagggtgaaaggcgttgtctccccagagggaagccgtatc
atttcctgataaacagttggctttctgttttctgtgctgacgccaaggct
ggtctttgggggatcctagcaatcaggagataccaagtcccccagcgcct
ttgttttctcaagcttctcagaaagcagcctttaagggtttggtgtcttc
cctgtcttgtggtcatgtctctctacgctgaggtgatttttggctctagg
gaacatgaaggtggctttatttgctcccaggttgcttcatcctctcttct
agatgcttcttccaatttctaaccctgagtgcaaaggggggagggaaggg
gctggggaggg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr13_100129955_100130203
seq2: B6Ng01-140K09.b_53_301

seq1  ACTTCTTCCCTGACGCTTTTACTGTAAGGGCACGAGGGACCATCTTATAT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTCTTCCCTGACGCTTTTACTGTAAGGGCACGAGGGACCATCTTATAT  50

seq1  GGGTATTTGTAGTTAGTAGAAAATATCTTGGTTCAGAAAGAGAATAACAG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGTATTTGTAGTTAGTAGAAAATATCTTGGTTCAGAAAGAGAATAACAG  100

seq1  GACCTGAACTATCTTTAAAAGCCTCCCCAACCTGCTTACTTGACAGAACA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACCTGAACTATCTTTAAAAGCCTCCCCAACCTGCTTACTTGACAGAACA  150

seq1  TCAGTTGTAAGGGCAAGGTGATGACTGTGTGTTTGCATGGATGCTGCTGG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGTTGTAAGGGCAAGGTGATGACTGTGTGTTTGCATGGATGCTGCTGG  200

seq1  CTGCATGTGCACACCTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTG  249
      |||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCATGTGCACACCTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTG  249

seq1: chr13_100219971_100220337
seq2: B6Ng01-140K09.g_70_436 (reverse)

seq1  CCCTCCCCAGCCCCTTCCCTCCCCCCTTTGCACTCAGGGTTAGAAATTGG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTCCCCAGCCCCTTCCCTCCCCCCTTTGCACTCAGGGTTAGAAATTGG  50

seq1  AAGAAGCATCTAGAAGAGAGGATGAAGCAACCTGGGAGCAAATAAAGCCA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAAGCATCTAGAAGAGAGGATGAAGCAACCTGGGAGCAAATAAAGCCA  100

seq1  CCTTCATGTTCCCTAGAGCCAAAAATCACCTCAGCGTAGAGAGACATGAC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTCATGTTCCCTAGAGCCAAAAATCACCTCAGCGTAGAGAGACATGAC  150

seq1  CACAAGACAGGGAAGACACCAAACCCTTAAAGGCTGCTTTCTGAGAAGCT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACAAGACAGGGAAGACACCAAACCCTTAAAGGCTGCTTTCTGAGAAGCT  200

seq1  TGAGAAAACAAAGGCGCTGGGGGACTTGGTATCTCCTGATTGCTAGGATC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGAAAACAAAGGCGCTGGGGGACTTGGTATCTCCTGATTGCTAGGATC  250

seq1  CCCCAAAGACCAGCCTTGGCGTCAGCACAGAAAACAGAAAGCCAACTGTT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCCAAAGACCAGCCTTGGCGTCAGCACAGAAAACAGAAAGCCAACTGTT  300

seq1  TATCAGGAAATGATACGGCTTCCCTCTGGGGAGACAACGCCTTTCACCCT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATCAGGAAATGATACGGCTTCCCTCTGGGGAGACAACGCCTTTCACCCT  350

seq1  ATAGGGAGTTTGAATTC  367
      |||||||||||||||||
seq2  ATAGGGAGTTTGAATTC  367