BAC Information

Click to search

BAC

Clone NameB6Ng01-140O11
Chromosome13 (Build37)
Map Location 57,006,788 - 57,150,693
singlet/doubletdoublet
Overlap genenone
Upstream geneH2afy, BC027057, Neurog1, Cxcl14, LOC100040926, AU042651, Il9, Fbxl21, Lect2, Tgfbi, Smad5, EG627415, Trpc7
Downstream geneLOC100040995, Spock1, Klhl3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-140O11.bB6Ng01-140O11.g
ACCDH939508DH939509
length906429
definitionDH939508|Mus musculus domesticus DNA, BAC clone: B6Ng01-140O11, 5' end.DH939509|Mus musculus domesticus DNA, BAC clone: B6Ng01-140O11, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(57,150,126 - 57,150,693)(57,006,788 - 57,007,222)
sequence
gaattctctaaaaataacttttggcataaaaatactttatggagaagact
ggcagggtgatttcttacagtaaataaaataaaataataaaatgatcttt
tatccgaaattcacttgttacagagtacactcttgtcattcttcaacaag
aaaatcgatgactcagtaaacgcatgggacatggtatgaggaagacatac
agtagctattgaaaacaagtctaacctaactctccaccaggaaaaagcaa
ataaaagatattctcagattccatctcatcccagaatgactagtatttaa
aaaaaaaaaaagtcaaatgacaacagatgctggtgaggatacaggggagg
ggaaagtttacttattataggcaggagtctaaacagtgctgtcactatgg
agattggtatggaggtttctcagaaaagctaaagctagcctttccatacg
atccagctctaccattgttagggatttactcaaaagcacacacatgaaat
taaaaaaagaaaaatagaagaagaacatgactgttcctagatatggtaga
ggaggaggtttactgtggataaaaggaacagcatagccagagacagggac
aaatgggaaagtgggagagtcaagagagaacatgacctgagccaggccat
gagaaagagaagggggaagaaggggaagaaccaggagaataaagggtaga
taaaaagggcaggtaaccaaaaatggtggcattatataaagaagggcagg
agaggccctggctggagaagtttagggaagggagcagagtaatgccatct
ataccctgtgacagggagtgagggatacttgggagatctggttgccagtg
cctgctttgatgtgtaaatagacacctctgttagccatctgtcttggtga
gaccta
ttttgctgggagtgtgtcccgtgcctatagtcccagctcccaggaggctg
atgtgagatcaaatattttgggccaacctgggctacatatagagactcta
tctcaaaagaattatgtcagagggagagaaagaaagaacaagggggaaaa
agagaaagggtggcgcatacctttgatcccggcacttgggaagcagaggc
aggtggatttctgagttcgaggccagcctggtctacaaagtgagttccag
gagagccagggctacacagagaaaccctgtctcaaaaaaacaaacgaaca
aacaaacaaaaaaccaaaaacaaaacacaaaacaaaacaaaaccgagaga
gagagagagagagagagagagagagagagagagagagagagagagagaga
gagagattgagagaagagagggactggga
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr13_57150126_57150693
seq2: B6Ng01-140O11.b_49_616 (reverse)

seq1  CCACAGTAAACCTCCTCCTCTACCATATCTAGGAACAGTCATGTTCTTCT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACAGTAAACCTCCTCCTCTACCATATCTAGGAACAGTCATGTTCTTCT  50

seq1  TCTATTTTTCTTTTTTTAATTTCATGTGTGTGCTTTTGAGTAAATCCCTA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTATTTTTCTTTTTTTAATTTCATGTGTGTGCTTTTGAGTAAATCCCTA  100

seq1  ACAATGGTAGAGCTGGATCGTATGGAAAGGCTAGCTTTAGCTTTTCTGAG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAATGGTAGAGCTGGATCGTATGGAAAGGCTAGCTTTAGCTTTTCTGAG  150

seq1  AAACCTCCATACCAATCTCCATAGTGACAGCACTGTTTAGACTCCTGCCT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACCTCCATACCAATCTCCATAGTGACAGCACTGTTTAGACTCCTGCCT  200

seq1  ATAATAAGTAAACTTTCCCCTCCCCTGTATCCTCACCAGCATCTGTTGTC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAATAAGTAAACTTTCCCCTCCCCTGTATCCTCACCAGCATCTGTTGTC  250

seq1  ATTTGACTTTTTTTTTTTTTAAATACTAGTCATTCTGGGATGAGATGGAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTGACTTTTTTTTTTTTTAAATACTAGTCATTCTGGGATGAGATGGAA  300

seq1  TCTGAGAATATCTTTTATTTGCTTTTTCCTGGTGGAGAGTTAGGTTAGAC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGAGAATATCTTTTATTTGCTTTTTCCTGGTGGAGAGTTAGGTTAGAC  350

seq1  TTGTTTTCAATAGCTACTGTATGTCTTCCTCATACCATGTCCCATGCGTT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTTTTCAATAGCTACTGTATGTCTTCCTCATACCATGTCCCATGCGTT  400

seq1  TACTGAGTCATCGATTTTCTTGTTGAAGAATGACAAGAGTGTACTCTGTA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTGAGTCATCGATTTTCTTGTTGAAGAATGACAAGAGTGTACTCTGTA  450

seq1  ACAAGTGAATTTCGGATAAAAGATCATTTTATTATTTTATTTTATTTACT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAGTGAATTTCGGATAAAAGATCATTTTATTATTTTATTTTATTTACT  500

seq1  GTAAGAAATCACCCTGCCAGTCTTCTCCATAAAGTATTTTTATGCCAAAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAAGAAATCACCCTGCCAGTCTTCTCCATAAAGTATTTTTATGCCAAAA  550

seq1  GTTATTTTTAGAGAATTC  568
      ||||||||||||||||||
seq2  GTTATTTTTAGAGAATTC  568

seq1: chr13_57006788_57007222
seq2: B6Ng01-140O11.g_67_501

seq1  GAATTCTTTTGCTGGGAGTGTGTCCCGTGCCTATAGTCCCAGCTCCCAGG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTTTGCTGGGAGTGTGTCCCGTGCCTATAGTCCCAGCTCCCAGG  50

seq1  AGGCTGATGTGAGATCAAATATTTTGGGCCAACCTGGGCTACATATAGAG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCTGATGTGAGATCAAATATTTTGGGCCAACCTGGGCTACATATAGAG  100

seq1  ACTCTATCTCAAAAGAATTATGTCAGAGGGAGAGAAAGAAAGAACAAGGG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCTATCTCAAAAGAATTATGTCAGAGGGAGAGAAAGAAAGAACAAGGG  150

seq1  GGAAAAAGAGAAAGGGTGGCGCATACCTTTGATCCCGGCACTTGGGAAGC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAAAAAGAGAAAGGGTGGCGCATACCTTTGATCCCGGCACTTGGGAAGC  200

seq1  AGAGGCAGGTGGATTTCTGAGTTCGAGGCCAGCCTGGTCTACAAAGTGAG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGGCAGGTGGATTTCTGAGTTCGAGGCCAGCCTGGTCTACAAAGTGAG  250

seq1  TTCCAGGAGAGCCAGGGCTACACAGAGAAACCCTGTCTCAAAAAAACAAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCAGGAGAGCCAGGGCTACACAGAGAAACCCTGTCTCAAAAAAACAAA  300

seq1  CGAACAAACAAACAAAAAACCAAAAACAAAACACAAAACAAAACAAAACC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGAACAAACAAACAAAAAACCAAAAACAAAACACAAAACAAAACAAAACC  350

seq1  GAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGA  400

seq1  GAGAGAGAGAGATTGAGAGAAGAGAGGGACTGGGA  435
      |||||||||||||||||||||||||||||||||||
seq2  GAGAGAGAGAGATTGAGAGAAGAGAGGGACTGGGA  435