BAC Information

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BAC

Clone NameB6Ng01-141J16
Chromosome13 (Build37)
Map Location 15,833,861 - 15,946,212
singlet/doubletdoublet
Overlap genenone
Upstream geneEG665099, LOC670994, EG625121, Gli3
Downstream geneLOC665157, Inhba, LOC625181, LOC665191
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-141J16.bB6Ng01-141J16.g
ACCDH940022DH940023
length992444
definitionDH940022|Mus musculus domesticus DNA, BAC clone: B6Ng01-141J16, 5' end.DH940023|Mus musculus domesticus DNA, BAC clone: B6Ng01-141J16, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(15,945,218 - 15,946,212)(15,833,861 - 15,834,310)
sequence
gaattccagacagcaacagagagaaatgtggaacaggagaacaaatgtgg
aatgtgtctttgaagataaacccttcctttccccatcattgagccaactc
acctatggccaatcgcttcatctaatactatatagacaacttaaatcata
aataaataaataaataaataaataaataaataagaaaatatctcttcaaa
gaaaggatagctacataggggtgggtggaaatggtcacttctgggaggtt
ttgcagtgactctgtcctttggtgattcatacttggcacagatttcagaa
tctttaaggccatgtgtttgggttctaccattttttttagggctctaacc
ttataattaacatactgaatatacccgtgcttttcttctattctgcctgg
cagcttagtttggacaatggaaatatagatgagaaactattaattatctg
ccagaaactaaaaatgctaaccgatcttttggagaaaaatagatctgaac
atacatgagagttataactattttgtgtggaataaacaacctcctttctg
tgtatactagaaggcgtgtgcggttgccatttatcttacacccccgatct
atgtttgatccctctcttacccttattacttataagagatgaaagaagat
cagaactttatttagcatagaattctagttgtttttggaataacagtcag
aggctttgcaagtgtctcaattttgacaactatctgaactgtgagacttt
ctctgagatttgacgttagtttgaaatctagctgagggagactgcttagg
aagttgacatctatctttttaaaatccctctgcttggtagggaattagag
gagtcagatgtggggatatccagaggccttctcaaccctcagctgatctt
aacgcacagtaccttagttttaatcctatctcctgtttaagctattgagc
gggctgggacaggcttgatgctcgacttcacttctatgttca
cattgctgttagctggaaacaagcagccagctacctcccttctcttgctt
gctggctgaagcatggagctggagataagccagggatcttgggagagggg
aagaaaaggggggggggtctaagctgcttgtggccaagataagtctgtgg
ctggggtcctcagctgagttaagtcaagaaatatttttattttcatttga
acatgattcttatactcacaaatatttacccaaatcatacttggatatac
tgcccaaaagagattttttaaaaataagcagcaaatgggagacaataaaa
ataatatctatgccatagctcaggaagagtctatattctgaataagagat
ttcctcccctgtaccttggatgctctggggtctctaggagtgatgctact
ggtctattgcctagccattctcaattccttaattcttaacatac
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr13_15945218_15946212
seq2: B6Ng01-141J16.b_49_1040 (reverse)

seq1  TGAACATAAGAGGTG-AGTCAGAGCATCAAGCCTGTCCCAGCCCTGCTCA  49
      ||||||| ||| ||| |||| ||||||||||||||||||||||| |||||
seq2  TGAACAT-AGAAGTGAAGTC-GAGCATCAAGCCTGTCCCAGCCC-GCTCA  47

seq1  ATAGCTTAAACAGTGAGATAGGATTAAAAACTAAGTTACTGTGTGTTATG  99
      ||||||||||||| ||||||||||| ||||||||| ||||||| |||| |
seq2  ATAGCTTAAACAG-GAGATAGGATT-AAAACTAAGGTACTGTGCGTTAAG  95

seq1  ATCAGCTG-GGGTTGAGAAGGCCTCTGGATATCCCCACCTCTGACTTCCT  148
      |||||||| ||||||||||||||||||||||||||||| |||||| ||||
seq2  ATCAGCTGAGGGTTGAGAAGGCCTCTGGATATCCCCACATCTGAC-TCCT  144

seq1  CTAATTCCCTACCAAGCAGAGGGATTTTTAAAAGATAGATGTCAACTTCC  198
      |||||||||||||||||||||||||||| |||||||||||||||||||||
seq2  CTAATTCCCTACCAAGCAGAGGGATTTTAAAAAGATAGATGTCAACTTCC  194

seq1  TAAGCAGTCTCCCTCAGCTAGATTTCAAACTAACGTCAAATCTCAGAG-A  247
      |||||||||||||||||||||||||||||||||||||||||||||||| |
seq2  TAAGCAGTCTCCCTCAGCTAGATTTCAAACTAACGTCAAATCTCAGAGAA  244

seq1  AGTCTCACAGTTCAGATAGTTGTCAAAATTGAGACACTTGCAAAGCCTCT  297
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTCTCACAGTTCAGATAGTTGTCAAAATTGAGACACTTGCAAAGCCTCT  294

seq1  GACTGTTATTCCAAAAACAACTAGAATTCTATGCTAAATAAAGTTCTGAT  347
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACTGTTATTCCAAAAACAACTAGAATTCTATGCTAAATAAAGTTCTGAT  344

seq1  CTTCTTTCATCTCTTATAAGTAATAAGGGTAAGAGAGGGATCAAACATAG  397
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCTTTCATCTCTTATAAGTAATAAGGGTAAGAGAGGGATCAAACATAG  394

seq1  ATCGGGGGTGTAAGATAAATGGCAACCGCACACGCCTTCTAGTATACACA  447
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCGGGGGTGTAAGATAAATGGCAACCGCACACGCCTTCTAGTATACACA  444

seq1  GAAAGGAGGTTGTTTATTCCACACAAAATAGTTATAACTCTCATGTATGT  497
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAGGAGGTTGTTTATTCCACACAAAATAGTTATAACTCTCATGTATGT  494

seq1  TCAGATCTATTTTTCTCCAAAAGATCGGTTAGCATTTTTAGTTTCTGGCA  547
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGATCTATTTTTCTCCAAAAGATCGGTTAGCATTTTTAGTTTCTGGCA  544

seq1  GATAATTAATAGTTTCTCATCTATATTTCCATTGTCCAAACTAAGCTGCC  597
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATAATTAATAGTTTCTCATCTATATTTCCATTGTCCAAACTAAGCTGCC  594

seq1  AGGCAGAATAGAAGAAAAGCACGGGTATATTCAGTATGTTAATTATAAGG  647
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCAGAATAGAAGAAAAGCACGGGTATATTCAGTATGTTAATTATAAGG  644

seq1  TTAGAGCCCTAAAAAAAATGGTAGAACCCAAACACATGGCCTTAAAGATT  697
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGAGCCCTAAAAAAAATGGTAGAACCCAAACACATGGCCTTAAAGATT  694

seq1  CTGAAATCTGTGCCAAGTATGAATCACCAAAGGACAGAGTCACTGCAAAA  747
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGAAATCTGTGCCAAGTATGAATCACCAAAGGACAGAGTCACTGCAAAA  744

seq1  CCTCCCAGAAGTGACCATTTCCACCCACCCCTATGTAGCTATCCTTTCTT  797
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCCCAGAAGTGACCATTTCCACCCACCCCTATGTAGCTATCCTTTCTT  794

seq1  TGAAGAGATATTTTCTTATTTATTTATTTATTTATTTATTTATTTATTTA  847
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAGAGATATTTTCTTATTTATTTATTTATTTATTTATTTATTTATTTA  844

seq1  TGATTTAAGTTGTCTATATAGTATTAGATGAAGCGATTGGCCATAGGTGA  897
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATTTAAGTTGTCTATATAGTATTAGATGAAGCGATTGGCCATAGGTGA  894

seq1  GTTGGCTCAATGATGGGGAAAGGAAGGGTTTATCTTCAAAGACACATTCC  947
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTGGCTCAATGATGGGGAAAGGAAGGGTTTATCTTCAAAGACACATTCC  944

seq1  ACATTTGTTCTCCTGTTCCACATTTCTCTCTGTTGCTGTCTGGAATTC  995
      ||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATTTGTTCTCCTGTTCCACATTTCTCTCTGTTGCTGTCTGGAATTC  992

seq1: chr13_15833861_15834310
seq2: B6Ng01-141J16.g_68_517

seq1  GAATTCCATTGCTGTTAGCTGGAAACAAGCAGCCAGCTACCTCCCTTCTC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCATTGCTGTTAGCTGGAAACAAGCAGCCAGCTACCTCCCTTCTC  50

seq1  TTGCTTGCTGGCTGAAGCATGGAGCTGGAGATAAGCCAGGGATCTTGGGA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGCTTGCTGGCTGAAGCATGGAGCTGGAGATAAGCCAGGGATCTTGGGA  100

seq1  GAGGGGAAGAAAAGGGGGGGGGGTCTAAGCTGCTTGTGGCCAAGATAAGT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGGGAAGAAAAGGGGGGGGGGTCTAAGCTGCTTGTGGCCAAGATAAGT  150

seq1  CTGTGGCTGGGGTCCTCAGCTGAGTTAAGTCAAGAAATATTTTTATTTTC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTGGCTGGGGTCCTCAGCTGAGTTAAGTCAAGAAATATTTTTATTTTC  200

seq1  ATTTGAACATGATTCTTATACTCACAAATATTTACCCAAATCATACTTGG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTGAACATGATTCTTATACTCACAAATATTTACCCAAATCATACTTGG  250

seq1  ATATACTGCCCAAAAGAGATTTTTTAAAAATAAGCAGCAAATGGGAGACA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATACTGCCCAAAAGAGATTTTTTAAAAATAAGCAGCAAATGGGAGACA  300

seq1  AGAAAAATAATATCTATGCCATAGCTCAGGAAGAGTCTATATTCTGAATA  350
      | ||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAAAATAATATCTATGCCATAGCTCAGGAAGAGTCTATATTCTGAATA  350

seq1  AGAGATTTCCTCCCCTGTACCTTGGATGCTCTGGGGTCTCTAGGAGTGAT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGATTTCCTCCCCTGTACCTTGGATGCTCTGGGGTCTCTAGGAGTGAT  400

seq1  GCTACTGGTCTATTGCCTAGCCATTCTCAATTCCTTAACTCTTAACAGAC  450
      |||||||||||||||||||||||||||||||||||||| |||||||| ||
seq2  GCTACTGGTCTATTGCCTAGCCATTCTCAATTCCTTAATTCTTAACATAC  450