BAC Information

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BAC

Clone NameB6Ng01-142N03
Chromosome13 (Build37)
Map Location 12,523,510 - 12,710,868
singlet/doubletdoublet
Overlap geneHeatr1, Lgals8, LOC100039900, Edaradd, Ero1lb, LOC664862
Upstream geneZp4, Ryr2, LOC100039678, Mtr, LOC100039826, Actn2, EG432725, LOC546246
Downstream geneEG238507, LOC100039744, EG630757, Prl2c3, LOC100039999, LOC100039754, Prl2c2, LOC434483, LOC674723, Prl2c5, LOC630611, LOC100039786, LOC385049, LOC630663, LOC100040108, Gpr137b, LOC664960, Nid1, Lyst
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-142N03.bB6Ng01-142N03.g
ACCDH940920DH940921
length1,0821,060
definitionDH940920|Mus musculus domesticus DNA, BAC clone: B6Ng01-142N03, 5' end.DH940921|Mus musculus domesticus DNA, BAC clone: B6Ng01-142N03, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(12,523,510 - 12,524,602)(12,709,801 - 12,710,868)
sequence
gaattcctaatgcacttctgcttgctgtgacccaggcagccctggctgaa
gcatatttgcctcttctcgccgggacactgtatggatcagcagttggtca
gacagtttgtgcatatgcttagcagtaagagaggcggatggcagtggcac
tgaggagaccgagaggctctcgagttcacgccccgtctaggctgtctagt
gagttcagggtcagtcttaacagtaaaaagaagtctgaagctggagctct
gtggctggattactgtgtagcatgaccaagaccctagctgactgctctac
actgggggtgggggaagaacagttgcttgaatgtggttgtgtgacttggg
actcagacccaagcaggggagatgggaaagaagactggcccttcttgtag
ctctgattacaggttgttttggcttccatttcttcaggtccaccgctttc
tcaaactggttccagtccttctggccattgtgcaacataagaaaagggag
gcagaggatgaacaggcaattaacagacagacagcgctgtacaccctgaa
actcctgtgcaagaacttcggggcacagaaccgagagcctttcataccag
ttctcagcactgcagtaaagctgatagaaccagagaaaaaggaggagaag
aatgtcctgggaagcgccctgctgtgcatagcagaggtgacgtccactct
ggaagcgctggccatcccccagctgcccaggtacctaggaacaggagcca
ctacaacggaaatggggaaggaatgcgttcagggcttcggcttcttgaat
agaaagtaaaggaaaatagagtagtgaaagaattgatcttttctttgctc
tggaaagtgcaccatttcctgtgaccttcagacattgcttggcgatgttc
ttcctttccagagtcgcagtgcttaggagcagcggaagcatggccagagc
agccgtttgctgtggcagagcagctgggcgctcctgactctgcatttggc
tctgacatagcctgctagcatgtaacagttacttatcttaaaccctgcat
ctgtatacagggcattcctctacacccacaga
gaattcagtttggggcaaaaaggatgaaaggatcgagagaggatcctggg
gtaagatagtcccctgagagcctgtgtcattatacagctgtgtctctatg
tggaccggctgctttagtctggggaacttcttgagacaattccactctag
ggcatggctgaccttgagctaaaacctcttaccttggcctcccaggtgct
ggggttatagtcgcaaatgaccatgcctggctatttggacagatcagtga
ggattaagtatattcaccactggaagttaagagctatggatttattagca
ttattaactgtatgtacataatggatttcactgtggtgtttataccggca
tgtttttgtttatccattctctttcctactgatctcttgtctcaccaatt
agtcctcttcctattttcaggtctttttaaaaaaatctataggtcctcaa
ggagcgagcagctcttccctcccccatgctatattttggggactgtaact
cagttggtagagtgctgctgagcatacaggaaaacttagattcagtaccc
agcacttgaaacgtagaggaaaataaaaaaaattcaatgacatctttagc
ttgagactagcctgggatacgagagaccctgaacaccacaccacccccac
cccaaagcatgcacagacacattaagcaccccagctagtgatagcactct
ttcctcatgcagttgtctgcatggatgctaaaaggatgatgtcttcttct
agaccaatcctgggatggtccccagccatggattcagtcccagatcttac
ttctttgacaacccccgaagatatgacagtgatgatgaccttgcctggaa
cattgcccctcaggacttcaggaaggtaagagccaactcctgttggagag
tgctgggccgctggaacagacgccagtgaagactcctactgcacagagca
gttctgcaaggtcaggtcaccatgggaagtagccagtgtaaaggatctta
agacctccccacccccggggcgttttctactctgtagtccatggaatgct
tagaagctgt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr13_12523510_12524602
seq2: B6Ng01-142N03.b_48_1129

seq1  GAATTCCTAATGCACTTCTGCTTGCTGTGACCCAGGCAGCCCTGGCTGAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCTAATGCACTTCTGCTTGCTGTGACCCAGGCAGCCCTGGCTGAA  50

seq1  GCATATTTGCCTCTTCTCGCCGGGACACTGTATGGATCAGCAGTTGGTCA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATATTTGCCTCTTCTCGCCGGGACACTGTATGGATCAGCAGTTGGTCA  100

seq1  GACAGTTTGTGCATATGCTTAGCAGTAAGAGAGGCGGATGGCAGTGGCAC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACAGTTTGTGCATATGCTTAGCAGTAAGAGAGGCGGATGGCAGTGGCAC  150

seq1  TGAGGAGACCGAGAGGCTCTCGAGTTCACGCCCCGTCTAGGCTGTCTAGT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGGAGACCGAGAGGCTCTCGAGTTCACGCCCCGTCTAGGCTGTCTAGT  200

seq1  GAGTTCAGGGTCAGTCTTAACAGTAAAAAGAAGTCTGAAGCTGGAGCTCT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTTCAGGGTCAGTCTTAACAGTAAAAAGAAGTCTGAAGCTGGAGCTCT  250

seq1  GTGGCTGGATTACTGTGTAGCATGACCAAGACCCTAGCTGACTGCTCTAC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGCTGGATTACTGTGTAGCATGACCAAGACCCTAGCTGACTGCTCTAC  300

seq1  ACTGGGGGTGGGGGAAGAACAGTTGCTTGAATGTGGTTGTGTGACTTGGG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGGGGGTGGGGGAAGAACAGTTGCTTGAATGTGGTTGTGTGACTTGGG  350

seq1  ACTCAGACCCAAGCAGGGGAGATGGGAAAGAAGACTGGCCCTTCTTGTAG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCAGACCCAAGCAGGGGAGATGGGAAAGAAGACTGGCCCTTCTTGTAG  400

seq1  CTCTGATTACAGGTTGTTTTGGCTTCCATTTCTTCAGGTCCACCGCTTTC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTGATTACAGGTTGTTTTGGCTTCCATTTCTTCAGGTCCACCGCTTTC  450

seq1  TCAAACTGGTTCCAGTCCTTCTGGCCATTGTGCAACATAAGAAAAGGGAG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAAACTGGTTCCAGTCCTTCTGGCCATTGTGCAACATAAGAAAAGGGAG  500

seq1  GCAGAGGATGAACAGGCAATTAACAGACAGACAGCGCTGTACACCCTGAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGAGGATGAACAGGCAATTAACAGACAGACAGCGCTGTACACCCTGAA  550

seq1  ACTCCTGTGCAAGAACTTCGGGGCACAGAACCGAGAGCCTTTCATACCAG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCCTGTGCAAGAACTTCGGGGCACAGAACCGAGAGCCTTTCATACCAG  600

seq1  TTCTCAGCACTGCAGTAAAGCTGATAGAACCAGAGAAAAAGGAGGAGAAG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTCAGCACTGCAGTAAAGCTGATAGAACCAGAGAAAAAGGAGGAGAAG  650

seq1  AATGTCCTGGGAAGCGCCCTGCTGTGCATAGCAGAGGTGACGTCCACTCT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGTCCTGGGAAGCGCCCTGCTGTGCATAGCAGAGGTGACGTCCACTCT  700

seq1  GGAAGCGCTGGCCATCCCCCAGCTGCCCAGGTACCTAGGAACAGGAGCCA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAAGCGCTGGCCATCCCCCAGCTGCCCAGGTACCTAGGAACAGGAGCCA  750

seq1  CTACAACGGAAATGGGGAAGGAATGCGTTCAGGGCTTCGGCTTCTTGAAT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTACAACGGAAATGGGGAAGGAATGCGTTCAGGGCTTCGGCTTCTTGAAT  800

seq1  AGAAAGTAAAGGAAAATAGAGTAGTGAAAGAATTGATCTTTTCTTTGCTC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAAGTAAAGGAAAATAGAGTAGTGAAAGAATTGATCTTTTCTTTGCTC  850

seq1  TGGAAAGTGCACCATTTCCTGTGACCTTCAGACATTGCTTGGCGATGTTC  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGAAAGTGCACCATTTCCTGTGACCTTCAGACATTGCTTGGCGATGTTC  900

seq1  TTCCTTTCCAGAGTCGCAGTGCTTAGGGAGCAGCGGAAGCATGGCCAGAG  950
      ||||||||||||||||||||||||| ||||||||||||||||||||||||
seq2  TTCCTTTCCAGAGTCGCAGTGCTTA-GGAGCAGCGGAAGCATGGCCAGAG  949

seq1  CAGCCGTTTGCTGTGGCAGAGGCAAGCTGGGCGCTCCTGACTCTGCATTT  1000
      |||||||||||||||||||||   ||||||||||||||||||||||||||
seq2  CAGCCGTTTGCTGTGGCAGAG--CAGCTGGGCGCTCCTGACTCTGCATTT  997

seq1  GGCTCTGACCATAGCCTGCTAGCATTGTAACAAGTTACTAATCTTAAAAC  1050
      |||||||| ||||||||||||||| |||||| ||||||| ||||| ||||
seq2  GGCTCTGA-CATAGCCTGCTAGCA-TGTAAC-AGTTACTTATCTT-AAAC  1043

seq1  CCTGCCATCTGTAATACAGGGCCATATCCTCTACACACACAGA  1093
      |||| ||||||| |||||||| ||| |||||||||| ||||||
seq2  CCTG-CATCTGT-ATACAGGG-CAT-TCCTCTACACCCACAGA  1082

seq1: chr13_12709801_12710868
seq2: B6Ng01-142N03.g_68_1127 (reverse)

seq1  ACAGCTCTTAAGCATTCCATGGACTACAGAGTAGGAAAAACGCCCCGGGG  50
      ||||||  ||||||||||||||||||||||||||  ||||||||||||||
seq2  ACAGCTTCTAAGCATTCCATGGACTACAGAGTAG--AAAACGCCCCGGGG  48

seq1  GTGGGGAGGTCTTTAAGAATCCTTTACACTGGCTACTTCCCATGGTGAAC  100
      ||||||||||| ||||| ||||||||||||||||||||||||||||| ||
seq2  GTGGGGAGGTC-TTAAG-ATCCTTTACACTGGCTACTTCCCATGGTG-AC  95

seq1  CTGGCCCTGCAGAACTGCTCTGTGCAGTAGGAGTCTTCCACTGGCGTCTG  150
      ||| || |||||||||||||||||||||||||||||| ||||||||||||
seq2  CTGACCTTGCAGAACTGCTCTGTGCAGTAGGAGTCTT-CACTGGCGTCTG  144

seq1  TTCCAGCGGCCCAGCACTCTCCAACAGGAGTTGGCTCTTACCTTCCCTGA  200
      |||||||||||||||||||||||||||||||||||||||||||| |||||
seq2  TTCCAGCGGCCCAGCACTCTCCAACAGGAGTTGGCTCTTACCTT-CCTGA  193

seq1  AGTCCCTGAGGGGCAATGTTCCAGGCAAGGTCATCATCACTGTCATATCT  250
      ||| ||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGT-CCTGAGGGGCAATGTTCCAGGCAAGGTCATCATCACTGTCATATCT  242

seq1  TCGGGGGTTGTCAAAGAAGTAAGATCTGGGACTGAATCCATGGCTGGGGA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCGGGGGTTGTCAAAGAAGTAAGATCTGGGACTGAATCCATGGCTGGGGA  292

seq1  CCATCCCAGGATTGGTCTAGAAGAAGACATCATCCTTTTAGCATCCATGC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATCCCAGGATTGGTCTAGAAGAAGACATCATCCTTTTAGCATCCATGC  342

seq1  AGACAACTGCATGAGGAAAGAGTGCTATCACTAGCTGGGGTGCTTAATGT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACAACTGCATGAGGAAAGAGTGCTATCACTAGCTGGGGTGCTTAATGT  392

seq1  GTCTGTGCATGCTTTGGGGTGGGGGTGGTGTGGTGTTCAGGGTCTCTCGT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTGTGCATGCTTTGGGGTGGGGGTGGTGTGGTGTTCAGGGTCTCTCGT  442

seq1  ATCCCAGGCTAGTCTCAAGCTAAAGATGTCATTGAATTTTTTTTATTTTC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCCCAGGCTAGTCTCAAGCTAAAGATGTCATTGAATTTTTTTTATTTTC  492

seq1  CTCTACGTTTCAAGTGCTGGGTACTGAATCTAAGTTTTCCTGTATGCTCA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTACGTTTCAAGTGCTGGGTACTGAATCTAAGTTTTCCTGTATGCTCA  542

seq1  GCAGCACTCTACCAACTGAGTTACAGTCCCCAAAATATAGCATGGGGGAG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGCACTCTACCAACTGAGTTACAGTCCCCAAAATATAGCATGGGGGAG  592

seq1  GGAAGAGCTGCTCGCTCCTTGAGGACCTATAGATTTTTTTAAAAAGACCT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAAGAGCTGCTCGCTCCTTGAGGACCTATAGATTTTTTTAAAAAGACCT  642

seq1  GAAAATAGGAAGAGGACTAATTGGTGAGACAAGAGATCAGTAGGAAAGAG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAATAGGAAGAGGACTAATTGGTGAGACAAGAGATCAGTAGGAAAGAG  692

seq1  AATGGATAAACAAAAACATGCCGGTATAAACACCACAGTGAAATCCATTA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGGATAAACAAAAACATGCCGGTATAAACACCACAGTGAAATCCATTA  742

seq1  TGTACATACAGTTAATAATGCTAATAAATCCATAGCTCTTAACTTCCAGT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTACATACAGTTAATAATGCTAATAAATCCATAGCTCTTAACTTCCAGT  792

seq1  GGTGAATATACTTAATCCTCACTGATCTGTCCAAATAGCCAGGCATGGTC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTGAATATACTTAATCCTCACTGATCTGTCCAAATAGCCAGGCATGGTC  842

seq1  ATTTGCGACTATAACCCCAGCACCTGGGAGGCCAAGGTAAGAGGTTTTAG  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTGCGACTATAACCCCAGCACCTGGGAGGCCAAGGTAAGAGGTTTTAG  892

seq1  CTCAAGGTCAGCCATGCCCTAGAGTGGAATTGTCTCAAGAAGTTCCCCAG  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCAAGGTCAGCCATGCCCTAGAGTGGAATTGTCTCAAGAAGTTCCCCAG  942

seq1  ACTAAAGCAGCCGGTCCACATAGAGACACAGCTGTATAATGACACAGGCT  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTAAAGCAGCCGGTCCACATAGAGACACAGCTGTATAATGACACAGGCT  992

seq1  CTCAGGGGACTATCTTACCCCAGGATCCTCTCTCGATCCTTTCATCCTTT  1050
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCAGGGGACTATCTTACCCCAGGATCCTCTCTCGATCCTTTCATCCTTT  1042

seq1  TTGCCCCAAACTGAATTC  1068
      ||||||||||||||||||
seq2  TTGCCCCAAACTGAATTC  1060