BAC Information

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BAC

Clone NameB6Ng01-142P16
Chromosome13 (Build37)
Map Location 100,435,404 - 100,569,932
singlet/doubletdoublet
Overlap genenone
Upstream geneTmem171, LOC669675, Fcho2, Tnpo1, EG432798, LOC100039771, 1700024P04Rik, LOC100039967, LOC100039797, Zfp366, Ptcd2, Mrps27, Mtap1b
Downstream geneCartpt, Mccc2, Bdp1, Serf1, Smn1, Naip2, Birc1-rs1, Naip5, Birc1c-ps1, Birc1f, EG667838, Naip1, Gtf2h2, Ocln, LOC667861, Marveld2, Rad17, Taf9, Ccdc125, Cdk7, Mrps36, Cenph, Ccnb1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-142P16.bB6Ng01-142P16.g
ACCDH941039DH941040
length1,1401,066
definitionDH941039|Mus musculus domesticus DNA, BAC clone: B6Ng01-142P16, 5' end.DH941040|Mus musculus domesticus DNA, BAC clone: B6Ng01-142P16, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(100,435,404 - 100,436,551)(100,568,876 - 100,569,932)
sequence
gaattctttctgcacaatagaagataattgctgttggcacacttgaacct
tgtatacctaacccaaaaacttccccagtataccttgggtgtggcagagt
gtgtggagaacatgcaaaaggagataatggagtgctctgaggtgatcccc
acactttgagccaatacccacgttttgagatgatccccacatttggggga
gaaaaatgacttgatatgccaggcaccacggcatcactaatggttctagc
tctcacttcatctttaaacttcgagtgttccttggaatataattgggcaa
agagtcgtagcatgcggtgatagatggggtggggagagccatttatcact
gatttttattacaagtctctggcctttcatgtgtgtctttgaggctcttc
agaaatatgaaactgaaatctgcttttaaatgccaggcatctttatagca
ctctggcaagagggaacatacccgcagagatctggagagcagagcatgct
ttgcagcctttgttcagatgagacattgttcccggatgctcctatcaccc
ttcgccattgcccaacccaagtcccaggaccctgtgacagaaggaaggtg
atgcttcagttgcagtgggtttaactcagctaattctgggtttaacagac
tttagaaaaaggtattggtcttcactggaaaaagacatttggatgggttg
actccttttctccatagactttgacttttgacgaccaaaaagcccccact
ctgtagaaatggcttgtgcctccatctgctgtgccacagggggcttagca
gcaactcaggagccgaggctgtttgctcactgtggtacctgagagctcag
cgtagagtttggcacacaaaccgagtatttgttcagtaagctcatgcatg
aattaacagaaaggatgtcacatcccctttgcatgtcctaacaactactt
tctccaccttaccctccaggtgcagaacttctatacggtgttcatgtgag
tacccgggaccaccaggctgcctgtcactcacgcctggcttgtctccact
tttgcagaaagtcgattctgtcactttcctctagggcaggaactttattt
tgtaattgtgtgtgagaatttaataatttaaaaaaactaa
gaattccagtcgttctgggaatgctggaatagtgctagagctcttagaaa
caggagtaaaaaggtttgggcagccaacgtggggtcaggtggctgaggtc
ccgggttcctcagtggcagaaatgttgagaggtgtaggcatgctctgatg
cttgcctctgtgagtgatcacagcctgaccaggccggtgggtccaaaggt
ctaacaaggagttctttagcggagagagccttcccctaagagttacagct
cagcaaaaccagctaggctcagatgatccttggtgaaataggttgtgtgc
tctttattcctcatggtcagggactacatgaacgttagggagtggagtcg
ggaaccatttgctgcttctctgaagcagagggaaaaaagagagaaagtct
tcctgccaggtagagtcaaggcagatttgtcggccatggaacgatgagag
gaggtgcacttgaggctcaaggccaggggctgaacagtctattgaccttg
gtggaaggaacaggaacattttgggtgagaacaaatgtcttatgtatata
cttcagcaaaattgttactgttagcttgtggctttgcttcccacggtact
gtagtataaaaaggctatgataaatatactcttcggctgacatggtatcg
aacggcagccttcccattatctgtctctcgcttcttttttctatcttttt
tataatcatcctcacttcccctcagaggatcattcgattttgtactggct
ggactggtccagagtaggataggattttgggggtgaatgcattctattgg
ctggaggttaagatactggtgatgctctatttgcatgggggaagatgccc
gggagctgggctacatgactgattcacctacccaggggcttacctggttg
ggggaggtcatcaagttacatgcctccgaggtagaagaatagggagggat
ttattcccactcctcctgggtcctcaggctgagatttaaattctcagtct
gaggtttccggggttgacatgctccaccttgcagtcatgccagtactcgc
tggcacagtcctgggc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr13_100435404_100436551
seq2: B6Ng01-142P16.b_48_1187

seq1  GAATTCTTTCTGCACAATAGAAGATAATTGCTGTTGGCACACTTGAACCT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTTCTGCACAATAGAAGATAATTGCTGTTGGCACACTTGAACCT  50

seq1  TGTATACCTAACCCAAAAACTTCCCCAGTATACCTTGGGTGTGGCAGAGT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTATACCTAACCCAAAAACTTCCCCAGTATACCTTGGGTGTGGCAGAGT  100

seq1  GTGTGGAGAACATGCAAAAGGAGATAATGGAGTGCTCTGAGGTGATCCCC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTGGAGAACATGCAAAAGGAGATAATGGAGTGCTCTGAGGTGATCCCC  150

seq1  ACACTTTGAGCCAATACCCACGTTTTGAGATGATCCCCACATTTGGGGGA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACTTTGAGCCAATACCCACGTTTTGAGATGATCCCCACATTTGGGGGA  200

seq1  GAAAAATGACTTGATATGCCAGGCACCACGGCATCACTAATGGTTCTAGC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAAATGACTTGATATGCCAGGCACCACGGCATCACTAATGGTTCTAGC  250

seq1  TCTCACTTCATCTTTAAACTTCGAGTGTTCCTTGGAATATAATTGGGCAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCACTTCATCTTTAAACTTCGAGTGTTCCTTGGAATATAATTGGGCAA  300

seq1  AGAGTCGTAGCATGCGGTGATAGATGGGGTGGGGAGAGCCATTTATCACT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGTCGTAGCATGCGGTGATAGATGGGGTGGGGAGAGCCATTTATCACT  350

seq1  GATTTTTATTACAAGTCTCTGGCCTTTCATGTGTGTCTTTGAGGCTCTTC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTTTTATTACAAGTCTCTGGCCTTTCATGTGTGTCTTTGAGGCTCTTC  400

seq1  AGAAATATGAAACTGAAATCTGCTTTTAAATGCCAGGCATCTTTATAGCA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAATATGAAACTGAAATCTGCTTTTAAATGCCAGGCATCTTTATAGCA  450

seq1  CTCTGGCAAGAGGGAACATACCCGCAGAGATCTGGAGAGCAGAGCATGCT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTGGCAAGAGGGAACATACCCGCAGAGATCTGGAGAGCAGAGCATGCT  500

seq1  TTGCAGCCTTTGTTCAGATGAGACATTGTTCCCGGATGCTCCTATCACCC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGCAGCCTTTGTTCAGATGAGACATTGTTCCCGGATGCTCCTATCACCC  550

seq1  TTCGCCATTGCCCAACCCAAGTCCCAGGACCCTGTGACAGAAGGAAGGTG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCGCCATTGCCCAACCCAAGTCCCAGGACCCTGTGACAGAAGGAAGGTG  600

seq1  ATGCTTCAGTTGCAGTGGGTTTAACTCAGCTAATTCTGGGTTTAACAGAC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCTTCAGTTGCAGTGGGTTTAACTCAGCTAATTCTGGGTTTAACAGAC  650

seq1  TTTAGAAAAAGGTATTGGTCTTCACTGGAAAAAGACATTTGGATGGGTTG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAGAAAAAGGTATTGGTCTTCACTGGAAAAAGACATTTGGATGGGTTG  700

seq1  ACTCCTTTTCTCCATAGACTTTGACTTTTGACGACCAAAAAGCCCCCACT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCCTTTTCTCCATAGACTTTGACTTTTGACGACCAAAAAGCCCCCACT  750

seq1  CTGTAGAAATGGCTTGTGCCTCCATCTGCTGTGCCACAGGGGGCTTAGCA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTAGAAATGGCTTGTGCCTCCATCTGCTGTGCCACAGGGGGCTTAGCA  800

seq1  GCAACTCAGGAGCCGAGGCTGTTTGCTCACTGTGGTACCTGAGAGCTCAG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAACTCAGGAGCCGAGGCTGTTTGCTCACTGTGGTACCTGAGAGCTCAG  850

seq1  CGTAGAGTTTGGCACACAAACCGAGTATTTGTTCAGTAAGCTCATGCATG  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGTAGAGTTTGGCACACAAACCGAGTATTTGTTCAGTAAGCTCATGCATG  900

seq1  AATTAACAGAAAGGATGTCACATCCCCCTTGCATGTCCTAACAACTACTT  950
      ||||||||||||||||||||||||||| ||||||||||||||||||||||
seq2  AATTAACAGAAAGGATGTCACATCCCCTTTGCATGTCCTAACAACTACTT  950

seq1  TCTCCACCTTACCCTCCAGGTGGCCAGAACTTCTATACGGTGTTCATGTG  1000
      ||||||||||||||||||||||  ||||||||||||||||||||||||| 
seq2  TCTCCACCTTACCCTCCAGGTG--CAGAACTTCTATACGGTGTTCATGT-  997

seq1  GAGTACCCGGGACCACCAGGCTGCCTTGTCACTCACGCCTGGCTTGTTCT  1050
      ||||||||||||||||||||||||| |||||||||||||||||||| |||
seq2  GAGTACCCGGGACCACCAGGCTGCC-TGTCACTCACGCCTGGCTTG-TCT  1045

seq1  CCACTTTTGCAGAAAGTACAGATTCTGTCACTTT-CTCTAGGGCCAGGAA  1099
      |||||||||||||||||   |||||||||||||| |||||||| |||| |
seq2  CCACTTTTGCAGAAAGT--CGATTCTGTCACTTTCCTCTAGGG-CAGG-A  1091

seq1  ACTTTATGTTGTAATTTGTGT-TGAAATTTTAATAATTAAAAAAAACTAA  1148
      ||||||| |||||| |||||| ||| | |||||||||| |||||||||||
seq2  ACTTTATTTTGTAA-TTGTGTGTGAGAATTTAATAATTTAAAAAAACTAA  1140

seq1: chr13_100568876_100569932
seq2: B6Ng01-142P16.g_71_1127 (reverse)

seq1  TGTGCCAGCCGAGGTACTGGCATGGAACTGGCAAGGTGGAGCATGTTCAA  50
      |||||||| ||| |||||||||||  ||| ||||||||||||||||   |
seq2  TGTGCCAG-CGA-GTACTGGCATG--ACT-GCAAGGTGGAGCATGT--CA  43

seq1  ACCCCGGAAACCTCAGAACTTGAG-ATTTAAATCTCAGCCTGAG--ACCA  97
      |||||||||||||||||   |||| |||||||||||||||||||   |||
seq2  ACCCCGGAAACCTCAGA--CTGAGAATTTAAATCTCAGCCTGAGGACCCA  91

seq1  GGAGGAGTGGGATTAATTCCCTCCCTATTTCTCTACCTCGGA-GCATGTA  146
      |||||||||||| ||| ||||||||||||  ||||||||||| |||||||
seq2  GGAGGAGTGGGAATAAATCCCTCCCTATTCTTCTACCTCGGAGGCATGTA  141

seq1  ACTTGATGACCTCCCCCAACCAGGTA--GCCCTGGGTA-GTGAATCAGTC  193
      ||||||||||||||||||||||||||   ||||||||| |||||||||||
seq2  ACTTGATGACCTCCCCCAACCAGGTAAGCCCCTGGGTAGGTGAATCAGTC  191

seq1  ATGTAGCCCAGCTCCC-GGCATTCTTCCCCATGCAAATAGAGCATCACCA  242
      |||||||||||||||| |||||  | ||||||||||||||||||||||||
seq2  ATGTAGCCCAGCTCCCGGGCATCTTCCCCCATGCAAATAGAGCATCACCA  241

seq1  GTATCTTAACCT-CAGCCAATAGAATGCATTCACCCCCAAAATCCTATCC  291
      |||||||||||| |||||||||||||||||||||||||||||||||||||
seq2  GTATCTTAACCTCCAGCCAATAGAATGCATTCACCCCCAAAATCCTATCC  291

seq1  TACTCTGGACCAGTCCAGCCAGTACAAAATCGAATGATCCTCTGAGGGGA  341
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTCTGGACCAGTCCAGCCAGTACAAAATCGAATGATCCTCTGAGGGGA  341

seq1  AGTGAGGATGATTATAAAAAAGATAGAAAAAAGAAGCGAGAGACAGATAA  391
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGAGGATGATTATAAAAAAGATAGAAAAAAGAAGCGAGAGACAGATAA  391

seq1  TGGGAAGGCTGCCGTTCGATACCATGTCAGCCGAAGAGTATATTTATCAT  441
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGAAGGCTGCCGTTCGATACCATGTCAGCCGAAGAGTATATTTATCAT  441

seq1  AGCCTTTTTATACTACAGTACCGTGGGAAGCAAAGCCACAAGCTAACAGT  491
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCTTTTTATACTACAGTACCGTGGGAAGCAAAGCCACAAGCTAACAGT  491

seq1  AACAATTTTGCTGAAGTATATACATAAGACATTTGTTCTCACCCAAAATG  541
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAATTTTGCTGAAGTATATACATAAGACATTTGTTCTCACCCAAAATG  541

seq1  TTCCTGTTCCTTCCACCAAGGTCAATAGACTGTTCAGCCCCTGGCCTTGA  591
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCTGTTCCTTCCACCAAGGTCAATAGACTGTTCAGCCCCTGGCCTTGA  591

seq1  GCCTCAAGTGCACCTCCTCTCATCGTTCCATGGCCGACAAATCTGCCTTG  641
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTCAAGTGCACCTCCTCTCATCGTTCCATGGCCGACAAATCTGCCTTG  641

seq1  ACTCTACCTGGCAGGAAGACTTTCTCTCTTTTTTCCCTCTGCTTCAGAGA  691
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCTACCTGGCAGGAAGACTTTCTCTCTTTTTTCCCTCTGCTTCAGAGA  691

seq1  AGCAGCAAATGGTTCCCGACTCCACTCCCTAACGTTCATGTAGTCCCTGA  741
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCAGCAAATGGTTCCCGACTCCACTCCCTAACGTTCATGTAGTCCCTGA  741

seq1  CCATGAGGAATAAAGAGCACACAACCTATTTCACCAAGGATCATCTGAGC  791
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATGAGGAATAAAGAGCACACAACCTATTTCACCAAGGATCATCTGAGC  791

seq1  CTAGCTGGTTTTGCTGAGCTGTAACTCTTAGGGGAAGGCTCTCTCCGCTA  841
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAGCTGGTTTTGCTGAGCTGTAACTCTTAGGGGAAGGCTCTCTCCGCTA  841

seq1  AAGAACTCCTTGTTAGACCTTTGGACCCACCGGCCTGGTCAGGCTGTGAT  891
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAACTCCTTGTTAGACCTTTGGACCCACCGGCCTGGTCAGGCTGTGAT  891

seq1  CACTCACAGAGGCAAGCATCAGAGCATGCCTACACCTCTCAACATTTCTG  941
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTCACAGAGGCAAGCATCAGAGCATGCCTACACCTCTCAACATTTCTG  941

seq1  CCACTGAGGAACCCGGGACCTCAGCCACCTGACCCCACGTTGGCTGCCCA  991
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACTGAGGAACCCGGGACCTCAGCCACCTGACCCCACGTTGGCTGCCCA  991

seq1  AACCTTTTTACTCCTGTTTCTAAGAGCTCTAGCACTATTCCAGCATTCCC  1041
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACCTTTTTACTCCTGTTTCTAAGAGCTCTAGCACTATTCCAGCATTCCC  1041

seq1  AGAACGACTGGAATTC  1057
      ||||||||||||||||
seq2  AGAACGACTGGAATTC  1057