BAC Information

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BAC

Clone NameB6Ng01-143B12
Chromosome13 (Build37)
Map Location 26,655,499 - 26,816,387
singlet/doubletdoublet
Overlap geneLOC100042191
Upstream geneLOC214973, LOC666221, LOC100042180
Downstream geneHdgfl1, LOC100040939, LOC100040945, LOC100040957, Prl, Prl3d1, Prl3d2, Prl3d3, Prl3c1, Prl3b1, Prl3a1, Prl6a1, Prl8a2, Prl2b1, Prl8a6, Prl8a8, Prl8a9, Prl8a1, Prl7b1, Prl7a1, Prl7a2, RP23-135A24.2-001, Prl7d1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-143B12.bB6Ng01-143B12.g
ACCDH941122DH941123
length1,118690
definitionDH941122|Mus musculus domesticus DNA, BAC clone: B6Ng01-143B12, 5' end.DH941123|Mus musculus domesticus DNA, BAC clone: B6Ng01-143B12, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(26,815,265 - 26,816,387)(26,655,499 - 26,656,188)
sequence
gaattcctagtgagcagcctatctattattcaccttaatccatctctcat
ggcactgagagttaccatgggaactctagtttagccttttgaacaataat
ggtattggaagggctctgttttgctgtgagggcaggagtgggtattctac
tagataaaagctatcagaagttaatgaaattggtttttatctttgtctgt
gtccagattcttaatgttctacctatggtgaacttgagagatggccaatt
tggaaatagttgcctgagtatgcttctggcttttgttttataggagaagc
taagtgctttgaatttcatgcctaacgagatggtaagaagaacttcatgt
tttcaaatgaatggagagaaaatctgaaatctgtaatgagtgagctgaca
gtgtaggaaggttcatttgcaggatgtaacctggatgaagagagaaaata
aattatctatgaatctcaagaggaagaaagatggtaatttaacaaaacgt
agaagcataactcagaagtcccttctctgtctgctagaaataagtcttaa
aggaagaaaacgactgaccaccatcctggcacatacttgtaatttctggc
aagtaaaataggtttttggtattatttagaggtaatattaaatcgaattc
tatttctttataattaaatttctctttagaccaccttgaaataacattgc
ttatacttttactaatttaatcaaggcactatcaatgctaaactgtcaag
caatttactgtcttggaaaagagaagggcactgggctatccattattcta
tggtatactcattgagaatctcaattaaatctttcaagtgaaaggacatt
gtcaaatgtgccaaggtagtcttcataggtgatacttaacagaaagaaat
ggaacgaaaattgtaaccttgtacttctttggcgcatttatggcacatat
gtgtctatactagcttcctctggtagaggggcataacccattgtcaagac
agccttacttattcctacacagtaaagagacatatttgtatcaatgtatg
tatccttctgatgcaaaacagtggtgctgatcactgatggtcaattgcct
ctttacaggcctggtcag
gaattctctagatcaagttggatcatgggtgtgtctgtgggaaattacct
tgatagtgttaactgatattgaaagagtcagttcatggtctggggtagtt
agggcattttctagtttggggtcctagactgtatgaggaggggagaaagc
aatcatgaatgtatttgcttctctctgctttggactgtgtgtgcaatgac
aggttagctgttttaagttccttctaccttgaccttcctgctatgataga
ctgcaaataaatcctctctgttcaggcagtactttttgacatggtaagtg
acagaaatgaaacaaagatgtcccatgagttgcataaggccttactaggg
ccatcagtcacaatcagagcacatcacaataacaagtgttcagttggacc
agaatcaatgtgaagatattattattttaaagatatgacatttttctcct
cctgttctgactttttacttcagatgatatttaatagctgttcacttctt
cgcattctatataattttacatatggcaaggtttctgtgaagaatataat
gtgagattcaaggaaactagaaaggggtagttagtacaggaggaggaaga
agtagatatgaacgggaaagagaaataatgagatggaagtttaagtcaaa
agagggattggaggaggatagaggagcggatgggggaggg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr13_26815265_26816387
seq2: B6Ng01-143B12.b_44_1161 (reverse)

seq1  CTGAACAGG-CTGTAAAGGAGGCAACTGACCATCAGTGATACAAGCAACA  49
      |||| |||| ||||||| ||||||| ||||||||||||||   |||| ||
seq2  CTGACCAGGCCTGTAAA-GAGGCAATTGACCATCAGTGAT--CAGCACCA  47

seq1  CTG-TTTGCATCAG-AGGATACCAATACATTGATACAAATATGTCTCTTT  97
      ||| |||||||||| |||||||  ||||||||||||||||||||||||||
seq2  CTGTTTTGCATCAGAAGGATAC--ATACATTGATACAAATATGTCTCTTT  95

seq1  ACTGTGTAGG-ATAAGTAAGGCTGTTCTTGACAATGGGTTATGCCCCTCT  146
      |||||||||| ||||||||||||| |||||||||||||||||||||||||
seq2  ACTGTGTAGGAATAAGTAAGGCTG-TCTTGACAATGGGTTATGCCCCTCT  144

seq1  ACCAGAGGAAGCTAGTATAGACACATATGTGCCATAAATGCGCCAAAGAA  196
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCAGAGGAAGCTAGTATAGACACATATGTGCCATAAATGCGCCAAAGAA  194

seq1  GTACAAGGTTACAATTTTCGTTCCATTTCTTTCTGTTAAGTATCACCTAT  246
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTACAAGGTTACAATTTTCGTTCCATTTCTTTCTGTTAAGTATCACCTAT  244

seq1  GAAGACTACCTTGGCACATTTTGACAATGTCCTTTCACTTGAAAGATTTT  296
      |||||||||||||||||| |||||||||||||||||||||||||||||| 
seq2  GAAGACTACCTTGGCACA-TTTGACAATGTCCTTTCACTTGAAAGATTT-  292

seq1  AATTTGAGATTCTCAATGAGTATACCATAGAATAATGGATAGCCCAGTGC  346
       | |||||||||||||||||||||||||||||||||||||||||||||||
seq2  -AATTGAGATTCTCAATGAGTATACCATAGAATAATGGATAGCCCAGTGC  341

seq1  CCTTCTCTTTTCCAAGACAGTAAATTGCTTGACAGTTTAGCATTGATAGT  396
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTCTCTTTTCCAAGACAGTAAATTGCTTGACAGTTTAGCATTGATAGT  391

seq1  GCCTTGATTAAATTAGTAAAAGTATAAGCAATGTTATTTCAAGGTGGTCT  446
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTTGATTAAATTAGTAAAAGTATAAGCAATGTTATTTCAAGGTGGTCT  441

seq1  AAAGAGAAATTTAATTATAAAGAAATAGAATTCGATTTAATATTACCTCT  496
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGAGAAATTTAATTATAAAGAAATAGAATTCGATTTAATATTACCTCT  491

seq1  AAATAATACCAAAAACCTATTTTACTTGCCAGAAATTACAAGTATGTGCC  546
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATAATACCAAAAACCTATTTTACTTGCCAGAAATTACAAGTATGTGCC  541

seq1  AGGATGGTGGTCAGTCGTTTTCTTCCTTTAAGACTTATTTCTAGCAGACA  596
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGATGGTGGTCAGTCGTTTTCTTCCTTTAAGACTTATTTCTAGCAGACA  591

seq1  GAGAAGGGACTTCTGAGTTATGCTTCTACGTTTTGTTAAATTACCATCTT  646
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAAGGGACTTCTGAGTTATGCTTCTACGTTTTGTTAAATTACCATCTT  641

seq1  TCTTCCTCTTGAGATTCATAGATAATTTATTTTCTCTCTTCATCCAGGTT  696
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTCCTCTTGAGATTCATAGATAATTTATTTTCTCTCTTCATCCAGGTT  691

seq1  ACATCCTGCAAATGAACCTTCCTACACTGTCAGCTCACTCATTACAGATT  746
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATCCTGCAAATGAACCTTCCTACACTGTCAGCTCACTCATTACAGATT  741

seq1  TCAGATTTTCTCTCCATTCATTTGAAAACATGAAGTTCTTCTTACCATCT  796
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGATTTTCTCTCCATTCATTTGAAAACATGAAGTTCTTCTTACCATCT  791

seq1  CGTTAGGCATGAAATTCAAAGCACTTAGCTTCTCCTATAAAACAAAAGCC  846
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGTTAGGCATGAAATTCAAAGCACTTAGCTTCTCCTATAAAACAAAAGCC  841

seq1  AGAAGCATACTCAGGCAACTATTTCCAAATTGGCCATCTCTCAAGTTCAC  896
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAGCATACTCAGGCAACTATTTCCAAATTGGCCATCTCTCAAGTTCAC  891

seq1  CATAGGTAGAACATTAAGAATCTGGACACAGACAAAGATAAAAACCAATT  946
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATAGGTAGAACATTAAGAATCTGGACACAGACAAAGATAAAAACCAATT  941

seq1  TCATTAACTTCTGATAGCTTTTATCTAGTAGAATACCCACTCCTGCCCTC  996
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATTAACTTCTGATAGCTTTTATCTAGTAGAATACCCACTCCTGCCCTC  991

seq1  ACAGCAAAACAGAGCCCTTCCAATACCATTATTGTTCAAAAGGCTAAACT  1046
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGCAAAACAGAGCCCTTCCAATACCATTATTGTTCAAAAGGCTAAACT  1041

seq1  AGAGTTCCCATGGTAACTCTCAGTGCCATGAGAGATGGATTAAGGTGAAT  1096
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGTTCCCATGGTAACTCTCAGTGCCATGAGAGATGGATTAAGGTGAAT  1091

seq1  AATAGATAGGCTGCTCACTAGGAATTC  1123
      |||||||||||||||||||||||||||
seq2  AATAGATAGGCTGCTCACTAGGAATTC  1118

seq1: chr13_26655499_26656188
seq2: B6Ng01-143B12.g_67_756

seq1  GAATTCTCTAGATCAAGTTGGATCATGGGTGTGTCTGTGGGAAATTACCT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTCTAGATCAAGTTGGATCATGGGTGTGTCTGTGGGAAATTACCT  50

seq1  TGATAGTGTTAACTGATATTGAAAGAGTCAGTTCATGGTCTGGGGTAGTT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATAGTGTTAACTGATATTGAAAGAGTCAGTTCATGGTCTGGGGTAGTT  100

seq1  AGGGCATTTTCTAGTTTGGGGTCCTAGACTGTATGAGGAGGGGAGAAAGC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGCATTTTCTAGTTTGGGGTCCTAGACTGTATGAGGAGGGGAGAAAGC  150

seq1  AATCATGAATGTATTTGCTTCTCTCTGCTTTGGACTGTGTGTGCAATGAC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCATGAATGTATTTGCTTCTCTCTGCTTTGGACTGTGTGTGCAATGAC  200

seq1  AGGTTAGCTGTTTTAAGTTCCTTCTACCTTGACCTTCCTGCTATGATAGA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTTAGCTGTTTTAAGTTCCTTCTACCTTGACCTTCCTGCTATGATAGA  250

seq1  CTGCAAATAAATCCTCTCTGTTCAGGCAGTACTTTTTGACATGGTAAGTG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCAAATAAATCCTCTCTGTTCAGGCAGTACTTTTTGACATGGTAAGTG  300

seq1  ACAGAAATGAAACAAAGATGTCCCATGAGTTGCATAAGGCCTTACTAGGG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGAAATGAAACAAAGATGTCCCATGAGTTGCATAAGGCCTTACTAGGG  350

seq1  CCATCAGTCACAATCAGAGCACATCACAATAACAAGTGTTCAGTTGGACC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATCAGTCACAATCAGAGCACATCACAATAACAAGTGTTCAGTTGGACC  400

seq1  AGAATCAATGTGAAGATATTATTATTTTAAAGATATGACATTTTTCTCCT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAATCAATGTGAAGATATTATTATTTTAAAGATATGACATTTTTCTCCT  450

seq1  CCTGTTCTGACTTTTTACTTCAGATGATATTTAATAGCTGTTCACTTCTT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGTTCTGACTTTTTACTTCAGATGATATTTAATAGCTGTTCACTTCTT  500

seq1  CGCATTCTATATAATTTTACATATGGCAAGGTTTCTGTGAAGAATATAAT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGCATTCTATATAATTTTACATATGGCAAGGTTTCTGTGAAGAATATAAT  550

seq1  GTGAGATTCAAGGAAACTAGAAAGGGGTAGTTAGTACAGGAGGAGGAAGA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGAGATTCAAGGAAACTAGAAAGGGGTAGTTAGTACAGGAGGAGGAAGA  600

seq1  AGTAGATATGAACGGGAAAGAGAAATAATGAGATGGAAGTTTAAGTCAAA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTAGATATGAACGGGAAAGAGAAATAATGAGATGGAAGTTTAAGTCAAA  650

seq1  AGAGGGATTGGAGGAGGATAGAGGAGCGGATGGGGGAGGG  690
      ||||||||||||||||||||||||||||||||||||||||
seq2  AGAGGGATTGGAGGAGGATAGAGGAGCGGATGGGGGAGGG  690