BAC Information

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BAC

Clone NameB6Ng01-143I09
Chromosome13 (Build37)
Map Location 56,857,788 - 56,858,851
singlet/doubletsinglet
Overlap genenone
Upstream genePcbd2, Catsper3, Pitx1, H2afy, BC027057, Neurog1, Cxcl14, LOC100040926, AU042651, Il9, Fbxl21, Lect2, Tgfbi, Smad5, EG627415
Downstream geneTrpc7, LOC100040995, Spock1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-143I09.bB6Ng01-143I09.g
ACCDH941437DH941438
length1,2421,062
definitionDH941437|Mus musculus domesticus DNA, BAC clone: B6Ng01-143I09, 5' end.DH941438|Mus musculus domesticus DNA, BAC clone: B6Ng01-143I09, 3' end.
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattcaatgaaaatgaatgcacagcatacccaaacttacaggacacagt
gaaagctgttctaagaagcaagttcatagtgcctacataacaaactggag
agatctcacagtagcaacttaacagcacacctgaaagctctagagcaaaa
ggaaggaagagcaggcaagagaagtagggagcaagaaataatcaaactcg
ggggctagaatcaataaaatagaaacaaagagaacaaaacaaagaagcag
tggaacaaagagttggttctttgagaaaaccaacaggataaacaaacaaa
atcaaaactaaaaggcagagatacaaattaacaaaatcagaaaacaaaag
tgggacataacagcaggcaccaaggaaatccagagaatcctaaggacata
ctttaaagtcctgtactccaccaaattgcaaagtcgaaaagaaatgggta
atttttcttggtaggtaccacttacccaaagcagataagcgatttaaata
aacctacaacccctactgaaatagaggtactcattaaaagtatctcaatc
aaaagaagtcgagggccagatggttttagtgcagaaaccctgttacccaa
atcacataaagacccaacaaagaaagggaattacagatcaatttctcctg
tgaacaaggatgcaaaaaatacccaacaaaatagccacaaactgaatcca
agaacacatcaaaatggccatccaccataatctaacagggatgtagggat
ggttcgatgtgaaaaagaagtcaaggaatgtaatccatataaacaaagtg
aaagaaaaaaaaaaacatgagcatctcattagatacagaaagacctttga
cgaaatccaacaccatttcatgatgaaagtccaggagatgtgagggaaat
atctaaacataataaagggcagttaacagcaggcctatagccaacatcaa
ttaaaccgagagaactcaaaacaattccagtaatcagggacaagattgtc
tactctctctattcaatacagtactcaagtcttagctaaagaataagaca
actgaagagatcaaagggaacatatgcatgaagaagaatattgcagatga
tttagatagcatacatgttagctaaacgtcaccaggacttcttagctgat
aaactcagcaagtaacggtatacgaattgttcaagggctatggcctccca
cttcaaattgcagagaccatggtagagaagtctcaggatgac
gaattccctcctgagctctggatgggaagtggtgaggcattttacacgct
tgagctgggcaccagcctggctagatgagagcccaggtagtgggttccct
gcagctgtgtgggcagctcaggtgggaaggggcatcctgggacggacaat
gcttttggattgtatagggaggcttgatagcggatagacttccctactca
ggaaacaggttgtgtttctaggtcaaggctgtggaacatgggtctgtgaa
gagggcttggtgcaaagggagggtccctgcagcaccacaggctcatggcg
gggacaaaggtcatctctgatcctgaggtccctgatgccactcactcctc
ccacatggcactgaaggatgctgacgtcgtctgagttttccctcatggca
gactgtttctgttcatggccctatcccaaatggagcaggcttgagcttta
gggttcatctcccgcactgcagcccatgatgacactgccattcctgtatg
taccccaggcaagagataaaacccaggaaggggagtcacttgtcaaggtc
accctgatgtgtttgtactgtaagggagcctccaattccaccatctgggg
gtgtccacgcagtctatacaggagcacgttgtcaagctgcctttccttga
cagagttggagggggtacatctatattgtccttctggggagccctctggt
atcgatggggaagccacagttgattttctgaaagatattcggagccctga
ggtttgatcacgttccctgaacatccacgggcaggaaattaaacaaggct
ggtacttagtaattgcagagatgaagtttacacagctttttatacaggcc
agagcgaccttccattaagggcgctttgtgtactcacacattaagtctga
gaaaagattataaaaggggcttctgaggtcgccgttgacaggcaggggca
cagaactgtgaactccaaagacctcctctcccatacgcgtggtaagtgcc
atgcgcgcttcctggtgcctgcctgcaaagacctggggggacaggggggg
gtgtgggggggt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr13_56857788_56858851
seq2: B6Ng01-143I09.g_70_1130

seq1  GAATTCCCTCCTGAGCTCTGGATGGGAAGTGGTGAGGCATTTTACACGCT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCCTCCTGAGCTCTGGATGGGAAGTGGTGAGGCATTTTACACGCT  50

seq1  TGAGCTGGGCACCAGCCTGGCTAGATGAGAGCCCAGGTAGTGGGTTCCCT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGCTGGGCACCAGCCTGGCTAGATGAGAGCCCAGGTAGTGGGTTCCCT  100

seq1  GCAGCTGTGTGGGCAGCTCAGGTGGGAAGGGGCATCCTGGGACGGACAAT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGCTGTGTGGGCAGCTCAGGTGGGAAGGGGCATCCTGGGACGGACAAT  150

seq1  GCTTTTGGATTGTATAGGGAGGCTTGATAGCGGATAGACTTCCCTACTCA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTTTGGATTGTATAGGGAGGCTTGATAGCGGATAGACTTCCCTACTCA  200

seq1  GGAAACAGGTTGTGTTTCTAGGTCAAGGCTGTGGAACATGGGTCTGTGAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAAACAGGTTGTGTTTCTAGGTCAAGGCTGTGGAACATGGGTCTGTGAA  250

seq1  GAGGGCTTGGTGCAAAGGGAGGGTCCCTGCAGCACCACAGGCTCATGGCG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGGCTTGGTGCAAAGGGAGGGTCCCTGCAGCACCACAGGCTCATGGCG  300

seq1  GGGACAAAGGTCATCTCTGATCCTGAGGTCCCTGATGCCACTCACTCCTC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGACAAAGGTCATCTCTGATCCTGAGGTCCCTGATGCCACTCACTCCTC  350

seq1  CCACATGGCACTGAAGGATGCTGACGTCGTCTGAGTTTTCCCTCATGGCA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACATGGCACTGAAGGATGCTGACGTCGTCTGAGTTTTCCCTCATGGCA  400

seq1  GACTGTTTCTGTTCATGGCCCTATCCCAAATGGAGCAGGCTTGAGCTTTA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACTGTTTCTGTTCATGGCCCTATCCCAAATGGAGCAGGCTTGAGCTTTA  450

seq1  GGGTTCATCTCCCGCACTGCAGCCCATGATGACACTGCCATTCCTGTATG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGTTCATCTCCCGCACTGCAGCCCATGATGACACTGCCATTCCTGTATG  500

seq1  TACCCCAGGCAAGAGATAAAACCCAGGAAGGGGAGTCACTTGTCAAGGTC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACCCCAGGCAAGAGATAAAACCCAGGAAGGGGAGTCACTTGTCAAGGTC  550

seq1  ACCCTGATGTGTTTGTACTGTAAGGGAGCCTCCAATTCCACCATCTGGGG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCCTGATGTGTTTGTACTGTAAGGGAGCCTCCAATTCCACCATCTGGGG  600

seq1  GTGTCCACGCAGTCTATACAGGAGCACGTTGTCAAGCTGCCTTTCCTTGA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTCCACGCAGTCTATACAGGAGCACGTTGTCAAGCTGCCTTTCCTTGA  650

seq1  CAGAGTTGGAGGGGGTACATCTATATTGTCCTTCTGGGGAGCCCTCTGGT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAGTTGGAGGGGGTACATCTATATTGTCCTTCTGGGGAGCCCTCTGGT  700

seq1  ATCGATGGGGAAGCCACAGTTGATTTTCTGAAAGATATTCGGAGCCCTGA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCGATGGGGAAGCCACAGTTGATTTTCTGAAAGATATTCGGAGCCCTGA  750

seq1  GG-TTGATCACGTTCCCTGAACATCCACGGGCAGGAAATTAAACAAGGCT  799
      || |||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTTTGATCACGTTCCCTGAACATCCACGGGCAGGAAATTAAACAAGGCT  800

seq1  GGTACTGAGTAAATGCAGAGATGAAGTTTACACAGCTTTTTATACAAGCC  849
      |||||| ||||| ||||||||||||||||||||||||||||||||| |||
seq2  GGTACTTAGTAATTGCAGAGATGAAGTTTACACAGCTTTTTATACAGGCC  850

seq1  AGAGCGACCTTCCATTAAGGGCGCTTTGTGTACTCACACATTTAAGTCTT  899
      |||||||||||||||||||||||||||||||||||||||| ||||||| |
seq2  AGAGCGACCTTCCATTAAGGGCGCTTTGTGTACTCACACA-TTAAGTC-T  898

seq1  GAG-AAAGATTATAAAAGGGGGCTCTGAGGCCGCCGTTGACAGGCAGGGG  948
      ||| |||||||||||||||||  ||||||| |||||||||||||||||||
seq2  GAGAAAAGATTATAAAAGGGGCTTCTGAGGTCGCCGTTGACAGGCAGGGG  948

seq1  CCACAGAACTGTGAACTCACAAAGACCT-CTCTCCCATTACGCAGTTGTT  997
       ||||||||||||||||| ||||||||| |||||||| |||||   || |
seq2  -CACAGAACTGTGAACTC-CAAAGACCTCCTCTCCCA-TACGC--GTGGT  993

seq1  AAGTGGCATGCGCGCCTTTCCTGGTGCCTGCCTGCAGAGACCT-GGGGGA  1046
      ||||| |||||||||  ||||||||||||||||||| |||||| ||||||
seq2  AAGTGCCATGCGCGC--TTCCTGGTGCCTGCCTGCAAAGACCTGGGGGGA  1041

seq1  CAGGGGCGGGGGGGGGGG--  1064
      |||||| ||| | |||||  
seq2  CAGGGGGGGGTGTGGGGGGG  1061