BAC Information

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BAC

Clone NameB6Ng01-144B18
Chromosome13 (Build37)
Map Location 65,557,655 - 65,576,861
singlet/doubletdoublet
Overlap geneLOC665777
Upstream geneLOC665612, 1190003K10Rik, LOC218298, Ppia-ps13_866.1, LOC238678, LOC631470, Cntnap3, EG432767, 4930458L03Rik, LOC218301, LOC628515, 4932441B19Rik, Gm274, Hiatl1, LOC100042311, Olfr465-ps1, Olfr466, Nlrp4f, ENSMUSG00000074847, Zfp369, LOC100042347, LOC100042341, LOC665738, EG665742, LOC665750, LOC665753, EG544944, EG665767
Downstream geneEG628648, LOC665809, LOC100042404, LOC628722, LOC665851, Vmn2r-ps99, LOC628794, EG665897, LOC100041855, EG628746, LOC100042434, LOC100041892, EG665974, LOC100041915, 2410141K09Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-144B18.bB6Ng01-144B18.g
ACCDH941870DH941871
length9911,017
definitionDH941870|Mus musculus domesticus DNA, BAC clone: B6Ng01-144B18, 5' end.DH941871|Mus musculus domesticus DNA, BAC clone: B6Ng01-144B18, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(65,557,655 - 65,558,638)(65,576,032 - 65,576,861)
sequence
gaattcactgacctcactgtggtgaaggtcttgtgggagatatttccatt
agtgatttttctcacttaatgaaacacagtcatttcataaggaaactgtc
ttttcacatacatttacaaagccttattttgcaggcacaatctgaatctc
aatgtccttttcatagaatgttcccgtcattgtatgttatctggttttct
tagcatctccctagtacactggaaagctatcccaaagtgcagcgcttctg
tgctatcacatgcattactgtcacggtgcttctcactctgctaacatgca
ttcttctttctcttttcaaatcagtgccttttattgcatcaggaagctat
gagattccaaatcccaacagaggcaatttaccatttaggtgatgtcttag
attctgttgctgtaaaaccaccagagtcaaaagaatcatgtgagaaaagt
atttactgacttatgtaccttggacacagtatattgagtgaagccaaggc
ctttctctaaccaaaggataaagaggatgagaaagaaattagggaaacaa
cagccttcacaatagtcacaaataatatgaaataccatggtgtgactcta
actaagaaagtgaaagatctgtatgataacaacttcagtctctgaagaaa
gaaatcaaagaagatctcagaagatggaaagacctcccatgctcatggat
tggcaggatcaatatagcaaaaatggctatcatgccaaaattaatttaca
gattcaatgcaatccccatcaaaattccaactaaattcttcatcgaatta
gaaagggcaatttgcaaattcatttggaataacaaaaagacctaggagag
caaaagctattctcaatgataaaagaacctctggtggaatcaccatgcct
gaccccaagctgtactacagagcaattgtgataaaacctgcatggtactg
gtacagcgacagacaggtagaccaatggatagaattgaaga
gaattctccttcgcctcggacgtgtcactccctgattggctgcagcccat
cggccgagttgacgtcacggggaaggcagagcacaagtagtcataagata
cccttggcacatgcgcagattatttgtttacctcttagaacacagctgtc
agcgccatcttgtaacggcgaatgtgggggcggctcccaacaatgatgct
tatcctatcctcccctaactttatggttcattctttaaaaacctagactg
caactgctggggtctatctcttctgcccctgtgtgggttacaagcccagt
ctcagcatgctgataatactcgaataaacctcatgcgatgttgcatcaag
aacggtttctctggagttattgggcatcggctcattccaggacttgagcg
agggtctccccagaaatgggggggggggtctttcactgccattagcacag
gtggatattgggtgccatatcagtgcccaggtgaggccaggagctgtcag
ctctggtttttatggccagcttccatcagcagaggggcacggtaagtggc
tttagggcctaactgttctgttgaaatccaccaggagcacccgtcttagg
tcaggagccatcagctctgggttgtgtgtacttagtgggcctcttgcagg
atggcacacagtgagtctgcagacagagttcctcacgaacattatggagc
agattcttaaagtaataggcactgaggtgggaactggtaactgtcttctg
tcagaatgttcgatgtggacatgtgagagagagcaaggtgaaatatttaa
accctgttcacagagaatggaggcccagactctgccccttacagcctctg
ctgtgtggacttgctgaggaaggcacagcaggggacagaaaaatcacagg
tgccagactgaggggactcccatgtggttgccacacctctgtacaggtga
aaaacatgtttatttcttcctaaaatacctgagaaaatgtggctcaggat
ggactcgtggcgattca
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr13_65557655_65558638
seq2: B6Ng01-144B18.b_47_1023

seq1  GAATTCACTGACCTCACTGTGGTGAAGGTCTTGTGGGAGACATTTCCATT  50
      |||||||||||||||||||||||||||||||||||||||| |||||||||
seq2  GAATTCACTGACCTCACTGTGGTGAAGGTCTTGTGGGAGATATTTCCATT  50

seq1  AGTGATTTTTCTCACATAATGAAACACAGTCATTTCATAATGAAACTGTC  100
      ||||||||||||||| |||||||||||||||||||||||| |||||||||
seq2  AGTGATTTTTCTCACTTAATGAAACACAGTCATTTCATAAGGAAACTGTC  100

seq1  TTTTCACATACATTTACAAAGCCTTATATTGCAGGCACAATCTGAATCTC  150
      ||||||||||||||||||||||||||| ||||||||||||||||||||||
seq2  TTTTCACATACATTTACAAAGCCTTATTTTGCAGGCACAATCTGAATCTC  150

seq1  AATGTCCTTTTCATAGAATGTTCCCTTCTTTGTATGTTATCTGGTTTTCT  200
      ||||||||||||||||||||||||| || |||||||||||||||||||||
seq2  AATGTCCTTTTCATAGAATGTTCCCGTCATTGTATGTTATCTGGTTTTCT  200

seq1  TAACATCTCCCTAGTACACTGGAAAGCTATCCCAAAGTGCAGCGCTTCCG  250
      || ||||||||||||||||||||||||||||||||||||||||||||| |
seq2  TAGCATCTCCCTAGTACACTGGAAAGCTATCCCAAAGTGCAGCGCTTCTG  250

seq1  TGCTATCATATGCATTACTGTCAAGGTGCTTCTCACTCTGCTAACATTCA  300
      |||||||| |||||||||||||| ||||||||||||||||||||||| ||
seq2  TGCTATCACATGCATTACTGTCACGGTGCTTCTCACTCTGCTAACATGCA  300

seq1  TTCTTGTTTCTCTTTTCAAATCAGTGCCTTTTATTACATCAGGAATCTAT  350
      ||||| ||||||||||||||||||||||||||||| ||||||||| ||||
seq2  TTCTTCTTTCTCTTTTCAAATCAGTGCCTTTTATTGCATCAGGAAGCTAT  350

seq1  GAGATTCCAAATCTCAACACAGGTAATTTACCATTTAGGTGATGTCTTAG  400
      ||||||||||||| ||||| ||| ||||||||||||||||||||||||||
seq2  GAGATTCCAAATCCCAACAGAGGCAATTTACCATTTAGGTGATGTCTTAG  400

seq1  ATTCTGTTGCAGTAAAATCCACCATAG-CCAAAGAAACATGTGAGAAAAC  449
      |||||||||| |||||| |||||| || | |||||| |||||||||||| 
seq2  ATTCTGTTGCTGTAAAA-CCACCAGAGTCAAAAGAATCATGTGAGAAAAG  449

seq1  TGTTTATTTACTTATGTACCTTGGGCACAGTATATTGAGTGAAGCCAAGG  499
      | |||| | ||||||||||||||| |||||||||||||||||||||||||
seq2  TATTTACTGACTTATGTACCTTGGACACAGTATATTGAGTGAAGCCAAGG  499

seq1  CTTTATACTCTACACAAAGGATAAACCGGATGAGAAAGAAATTAGGGAAA  549
      | |  | |||||  |||||||||||  |||||||||||||||||||||||
seq2  CCT--TTCTCTAACCAAAGGATAAAGAGGATGAGAAAGAAATTAGGGAAA  547

seq1  CAACACCCTTCACAATAGGCACAAATAATATGAAATACCTTGGTGTGACT  599
      ||||| |||||||||||| |||||||||||||||||||| ||||||||||
seq2  CAACAGCCTTCACAATAGTCACAAATAATATGAAATACCATGGTGTGACT  597

seq1  CTAACTAAGAAAGTGAAAGATCTGTATGATAAGAACTTCAAGTCTCTGAA  649
      |||||||||||||||||||||||||||||||| |||||| ||||||||||
seq2  CTAACTAAGAAAGTGAAAGATCTGTATGATAACAACTTC-AGTCTCTGAA  646

seq1  GAAAGAAATCAAAGAAGATCTCAGAAGATGGAAAGATCTCCCATGCTCAT  699
      |||||||||||||||||||||||||||||||||||| |||||||||||||
seq2  GAAAGAAATCAAAGAAGATCTCAGAAGATGGAAAGACCTCCCATGCTCAT  696

seq1  GGATTGGCAGGATCCATATAGTAAAAATGGCTATCTTGCCAAAAGCAATC  749
      |||||||||||||| |||||| ||||||||||||| ||||||||  ||| 
seq2  GGATTGGCAGGATCAATATAGCAAAAATGGCTATCATGCCAAAATTAATT  746

seq1  TACAGATTCAATGCAAT-CCCATCAAAATTCCAACTCAATTCTTCACCAA  798
      ||||||||||||||||| |||||||||||||||||| ||||||||| | |
seq2  TACAGATTCAATGCAATCCCCATCAAAATTCCAACTAAATTCTTCATCGA  796

seq1  ATTAGAAAGGGCAATTTACAAAATCATCTGGAATAACAAAAAAAATCTAG  848
      ||||||||||||||||| |||| |||| ||||||||| ||||| | ||||
seq2  ATTAGAAAGGGCAATTTGCAAATTCATTTGGAATAAC-AAAAAGACCTAG  845

seq1  GATAGCAAAAGCTATTCCCAAAGAAAAAAGAAAGAACCTCTGGTGGAATC  898
      || |||||||||||||| ||| || |    ||||||||||||||||||||
seq2  GAGAGCAAAAGCTATTCTCAATGATA----AAAGAACCTCTGGTGGAATC  891

seq1  ACCATGCCTGACCTCAAGCTGTACTACAGAGCAATTGTGATAAAACCTGC  948
      ||||||||||||| ||||||||||||||||||||||||||||||||||||
seq2  ACCATGCCTGACCCCAAGCTGTACTACAGAGCAATTGTGATAAAACCTGC  941

seq1  ATGGTACTGGTACAACGACAGACAGGTAGACCAATG  984
      |||||||||||||| |||||||||||||||||||||
seq2  ATGGTACTGGTACAGCGACAGACAGGTAGACCAATG  977

seq1: chr13_65576032_65576861
seq2: B6Ng01-144B18.g_258_1082 (reverse)

seq1  TGAATCGCCA-GGGTCCTGTCCTGAGCCAC-TTTTCTCAGGTTTTTCTGT  48
      |||||||||| | ||||  ||||||||||| ||||||||||| ||| |  
seq2  TGAATCGCCACGAGTCC-ATCCTGAGCCACATTTTCTCAGGTATTT-TAG  48

seq1  GGAGAAATAAACATGTTTCTCAACCCTG-ACAGAGGTTGTGGC-AGCACA  96
      | |||||||||||||||| |||  |||| ||||||| |||||| | ||||
seq2  GAAGAAATAAACATGTTTTTCA--CCTGTACAGAGG-TGTGGCAACCACA  95

seq1  TGGGAGTCCCCTCAGTCCTGGGCACCTGTGGCTTCTCTGTCCCCTGCCTG  146
      |||||||||||||||||   ||||||||||  || ||||||||||| |||
seq2  TGGGAGTCCCCTCAGTC--TGGCACCTGTGATTTTTCTGTCCCCTG-CTG  142

seq1  TGCCTTCCTCAGCAAGTTCCACACAGCAGAGGCTGTAAGGGGCAG-GTCT  195
      |||||||||||||||| |||||||||||||||||||||||||||| ||||
seq2  TGCCTTCCTCAGCAAG-TCCACACAGCAGAGGCTGTAAGGGGCAGAGTCT  191

seq1  GGGCCTCCATTCTCTGTGAACAGGGTTTTAATATTTCACCCTGCTCTCTC  245
      |||||||||||||||||||||||||||| ||||||||||| |||||||||
seq2  GGGCCTCCATTCTCTGTGAACAGGGTTTAAATATTTCACCTTGCTCTCTC  241

seq1  TCACATGTCCACATCGAACATTCTGACAGAAGACAGTTACCAGTTCCCAC  295
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACATGTCCACATCGAACATTCTGACAGAAGACAGTTACCAGTTCCCAC  291

seq1  CTCAGTGCCTATTACTTTAAGAATCTGCTCCATAATGTTCGTGAGGAACT  345
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCAGTGCCTATTACTTTAAGAATCTGCTCCATAATGTTCGTGAGGAACT  341

seq1  CTGTCTGCAGACTCACTGTGTGCCATCCTGCAAGAGGCCCACTAAGTACA  395
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTCTGCAGACTCACTGTGTGCCATCCTGCAAGAGGCCCACTAAGTACA  391

seq1  CACAATCCAGAGCTGATGGCTCCTGACCTAAGACGGGTGCTCCTGGTGGA  445
      ||||| ||||||||||||||||||||||||||||||||||||||||||||
seq2  CACAACCCAGAGCTGATGGCTCCTGACCTAAGACGGGTGCTCCTGGTGGA  441

seq1  TTTCAACAGAACAGTTAGGCCCTAAAGCCACTTACCGTGCCCCTCTGCTG  495
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCAACAGAACAGTTAGGCCCTAAAGCCACTTACCGTGCCCCTCTGCTG  491

seq1  ATGGAAGCTGGCCATAAAAACCAGAGCTGACAGCTCCTGGCCTCACCTGG  545
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGAAGCTGGCCATAAAAACCAGAGCTGACAGCTCCTGGCCTCACCTGG  541

seq1  GCACTGATATGGCACCCAATATCCACCTGTGCTAATGGCAGTGAAAGACC  595
      |||||||||||||||||||||||||||||||||||||||||||||||| |
seq2  GCACTGATATGGCACCCAATATCCACCTGTGCTAATGGCAGTGAAAGA-C  590

seq1  CCCCCCCCCCATTTCTGGGGAGACCCTCGCTCAAGTCCTGGAATGAGCCG  645
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCCCCCCCCATTTCTGGGGAGACCCTCGCTCAAGTCCTGGAATGAGCCG  640

seq1  ATGCCCAATAACTCCAGAGAAACCGTTCTTGATGCAACATCGCATGAGGT  695
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCCCAATAACTCCAGAGAAACCGTTCTTGATGCAACATCGCATGAGGT  690

seq1  TTATTCGAGTATTATCAGCATGCTGAGACTGGGCTTGTAACCCACACAGG  745
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATTCGAGTATTATCAGCATGCTGAGACTGGGCTTGTAACCCACACAGG  740

seq1  GGCAGAAGAGATAGACCCCAGCAGTTGCAGTCTAGGTTTTTAAAGAATGA  795
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCAGAAGAGATAGACCCCAGCAGTTGCAGTCTAGGTTTTTAAAGAATGA  790

seq1  ACCATAAAGTTAGGGGAGGATAGGATAAGCATCAT  830
      |||||||||||||||||||||||||||||||||||
seq2  ACCATAAAGTTAGGGGAGGATAGGATAAGCATCAT  825